Wall clock time and date at job start Tue Mar 31 2020 19:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 N 1.33027 * 120.17422 * 80.55397 * 3 2 1 5 5 C 1.31841 * 119.98995 * 179.97438 * 4 3 2 6 6 C 1.38644 * 120.35419 * 0.02562 * 5 4 3 7 7 N 1.32124 * 120.34911 * 359.97438 * 6 5 4 8 8 C 1.32728 * 119.99949 * 359.70580 * 7 6 5 9 9 N 1.38405 * 120.17276 * 180.30094 * 8 7 6 10 10 C 1.46501 * 120.00196 * 0.28986 * 9 8 7 11 11 C 1.53002 * 109.47037 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.47152 * 304.99989 * 11 10 9 13 13 O 1.42896 * 109.47040 * 65.00029 * 11 10 9 14 14 C 1.53004 * 109.46892 * 185.00320 * 11 10 9 15 15 N 1.46495 * 109.47125 * 179.97438 * 14 11 10 16 16 C 1.34771 * 119.99998 * 179.97438 * 15 14 11 17 17 O 1.21284 * 120.00275 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00002 * 180.02562 * 16 15 14 19 19 S 1.80995 * 109.47140 * 180.02562 * 18 16 15 20 20 C 1.76201 * 100.00233 * 180.02562 * 19 18 16 21 21 H 1.08007 * 119.99619 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00190 * 180.02562 * 20 19 18 23 23 N 1.31626 * 120.00258 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99790 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47045 * 90.00161 * 24 22 20 26 26 H 1.48493 * 109.46668 * 209.99775 * 24 22 20 27 27 H 1.48498 * 109.47164 * 330.00096 * 24 22 20 28 28 H 1.08002 * 119.82377 * 180.02562 * 5 4 3 29 29 H 1.07995 * 119.82910 * 179.97438 * 6 5 4 30 30 H 0.97004 * 119.99775 * 180.29740 * 9 8 7 31 31 H 1.09000 * 109.47055 * 300.00131 * 10 9 8 32 32 H 1.08999 * 109.46755 * 59.99792 * 10 9 8 33 33 H 0.96699 * 113.99865 * 60.00453 * 13 11 10 34 34 H 1.09003 * 109.46952 * 299.99792 * 14 11 10 35 35 H 1.09001 * 109.47267 * 59.99637 * 14 11 10 36 36 H 0.96999 * 120.00124 * 0.02562 * 15 14 11 37 37 H 1.09003 * 109.47047 * 300.00115 * 18 16 15 38 38 H 1.08996 * 109.47061 * 60.00436 * 18 16 15 39 39 H 0.96999 * 120.00418 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2367 -0.1878 -1.1344 5 6 4.5551 -0.1860 -1.1303 6 6 5.2518 0.0110 0.0521 7 7 4.6015 0.1995 1.1866 8 6 3.2742 0.2067 1.1975 9 7 2.5894 0.4100 2.3829 10 6 3.3294 0.6243 3.6290 11 6 2.3421 0.8212 4.7811 12 1 1.6567 1.6329 4.5376 13 8 1.6008 -0.3835 4.9841 14 6 3.1107 1.1684 6.0577 15 7 2.1654 1.3574 7.1607 16 6 2.6188 1.6716 8.3904 17 8 3.8094 1.7982 8.5838 18 6 1.6463 1.8655 9.5253 19 16 2.5555 2.2764 11.0354 20 6 1.2135 2.4427 12.1650 21 1 0.1994 2.2940 11.8243 22 6 1.4594 2.7658 13.4922 23 7 2.6953 2.9475 13.9073 24 14 0.0365 2.9427 14.6896 25 1 -0.2457 1.6285 15.3206 26 1 0.3935 3.9297 15.7400 27 1 -1.1692 3.4106 13.9598 28 1 5.0953 -0.3388 -2.0530 29 1 6.3317 0.0105 0.0457 30 1 1.6194 0.4105 2.3887 31 1 3.9568 -0.2434 3.8328 32 1 3.9561 1.5109 3.5315 33 1 2.1480 -1.1495 5.2051 34 1 3.7962 0.3566 6.3013 35 1 3.6762 2.0872 5.9028 36 1 1.2132 1.2558 7.0062 37 1 0.9611 2.6775 9.2818 38 1 1.0806 0.9468 9.6800 39 1 2.8672 3.1737 14.8347 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105753508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:24 Heat of formation + Delta-G solvation = -1.175382 kcal Electronic energy + Delta-G solvation = -24319.170434 eV Core-core repulsion = 20388.733687 eV Total energy + Delta-G solvation = -3930.436748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.78204 -39.62797 -38.43228 -37.20011 -36.42699 -34.44844 -34.24871 -32.45253 -32.00569 -30.39215 -28.83757 -26.46553 -25.81748 -25.40102 -23.53756 -22.45020 -20.46434 -20.14777 -18.95822 -18.31709 -17.88838 -17.18708 -16.84035 -16.38808 -15.97385 -15.86705 -15.39195 -15.05196 -14.90144 -14.82147 -14.63752 -14.12394 -13.98385 -13.84715 -13.58440 -13.54206 -13.23390 -13.12991 -12.91666 -12.58811 -12.24905 -11.96234 -11.82817 -11.58917 -11.08192 -11.04771 -10.94073 -10.82975 -10.72003 -9.87104 -9.83847 -9.50305 -9.10202 -9.01993 -8.62699 -8.27428 -6.53205 -6.24098 -3.95004 -0.14213 0.59759 1.95724 2.15012 2.32266 2.91152 2.98621 3.00984 3.20979 3.25322 3.27673 3.29247 3.48350 3.63488 3.83368 3.88411 4.15787 4.18082 4.19246 4.37062 4.46465 4.49650 4.63495 4.98795 5.07620 5.10070 5.11290 5.41158 5.43926 5.52604 5.67732 5.85107 6.10515 6.11911 6.21341 6.46468 6.72219 6.93526 7.04140 7.18424 7.57317 7.60908 8.32962 8.51766 9.21417 10.83323 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.030981 B = 0.001626 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.552666 B =17214.928623 C =17986.606864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C 0.266 3.734 3 C 0.065 3.935 4 N -0.365 5.365 5 C -0.012 4.012 6 C 0.144 3.856 7 N -0.494 5.494 8 C 0.407 3.593 9 N -0.694 5.694 10 C 0.096 3.904 11 C 0.082 3.918 12 H 0.114 0.886 13 O -0.554 6.554 14 C 0.095 3.905 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.180 0.820 29 H 0.182 0.818 30 H 0.417 0.583 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.382 0.618 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.403 0.597 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.276 -7.031 -30.065 31.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.063 5.063 2 C -0.051 4.051 3 C -0.083 4.083 4 N -0.080 5.080 5 C -0.178 4.178 6 C -0.021 4.021 7 N -0.217 5.217 8 C 0.164 3.836 9 N -0.324 5.324 10 C -0.028 4.028 11 C 0.022 3.978 12 H 0.131 0.869 13 O -0.360 6.360 14 C -0.031 4.031 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.197 0.803 29 H 0.199 0.801 30 H 0.256 0.744 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.231 0.769 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.238 0.762 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.207 -6.341 -29.475 30.441 hybrid contribution -2.025 -0.417 0.469 2.120 sum 2.182 -6.758 -29.006 29.863 Atomic orbital electron populations 1.81326 1.11117 1.08135 1.05721 1.24711 0.91345 0.94285 0.94776 1.16460 0.86995 1.14565 0.90302 1.68119 1.09848 1.04331 1.25735 1.23487 0.89248 1.04651 1.00402 1.23952 1.02095 0.88615 0.87474 1.68244 1.05170 1.18506 1.29733 1.18985 0.89476 0.89024 0.86103 1.44515 1.09120 1.74431 1.04337 1.22117 0.94591 1.03806 0.82327 1.22436 0.93983 0.88893 0.92464 0.86869 1.86616 1.37776 1.19089 1.92537 1.21774 0.92533 1.02953 0.85809 1.45840 1.10382 1.74058 1.08669 1.20338 0.89637 0.75367 0.82759 1.90709 1.16735 1.48844 1.82900 1.23528 1.02096 1.04985 0.99790 1.85377 1.10774 1.90882 0.96327 1.22870 0.93875 1.55481 0.96221 0.90894 1.24990 0.96552 0.94569 0.97437 1.70012 1.18769 1.44531 1.16970 0.86163 0.81213 0.78155 0.79948 1.20251 1.20731 1.19695 0.80349 0.80121 0.74419 0.89902 0.89323 0.76926 0.90805 0.90248 0.76219 0.89173 0.89121 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.20 18.54 41.83 0.78 -3.43 16 2 C 0.27 2.42 14.32 -22.47 -0.32 2.10 16 3 C 0.06 0.50 6.61 -84.55 -0.56 -0.06 16 4 N -0.37 -2.63 10.42 -10.74 -0.11 -2.74 16 5 C -0.01 -0.05 11.21 -17.40 -0.19 -0.24 16 6 C 0.14 0.48 11.22 -17.28 -0.19 0.29 16 7 N -0.49 -2.98 9.72 -11.97 -0.12 -3.10 16 8 C 0.41 2.74 7.48 -154.78 -1.16 1.59 16 9 N -0.69 -4.07 5.56 -60.11 -0.33 -4.40 16 10 C 0.10 0.49 5.34 -4.04 -0.02 0.47 16 11 C 0.08 0.48 3.09 -26.73 -0.08 0.40 16 12 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 13 O -0.55 -3.63 13.03 -35.23 -0.46 -4.09 16 14 C 0.09 0.84 5.34 -4.04 -0.02 0.82 16 15 N -0.73 -8.74 5.45 -60.29 -0.33 -9.07 16 16 C 0.53 9.40 7.85 -10.99 -0.09 9.31 16 17 O -0.52 -11.18 15.86 5.55 0.09 -11.10 16 18 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 21 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 24 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.18 0.08 8.06 -52.49 -0.42 -0.34 16 29 H 0.18 -0.06 8.06 -52.49 -0.42 -0.48 16 30 H 0.42 2.52 7.32 -40.82 -0.30 2.23 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.38 1.63 9.05 45.56 0.41 2.04 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.40 4.01 8.35 -40.82 -0.34 3.67 16 37 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 38 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 370.78 15.07 5.59 5.59 Total: -1.00 -37.53 370.78 -7.20 -44.73 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -3.58 Total: 1.39 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -2.22 Total: -1.00 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.62 Total: -47.96 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.37 Total: -15.18 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.53 -7.20 -44.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105753508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.553 kcal (2) G-P(sol) polarization free energy of solvation -37.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds