Wall clock time and date at job start Tue Mar 31 2020 19:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 N 1.33027 * 120.17422 * 80.55397 * 3 2 1 5 5 C 1.31841 * 119.98995 * 179.97438 * 4 3 2 6 6 C 1.38644 * 120.35419 * 0.02562 * 5 4 3 7 7 N 1.32124 * 120.34911 * 359.97438 * 6 5 4 8 8 C 1.32728 * 119.99949 * 359.70580 * 7 6 5 9 9 N 1.38405 * 120.17276 * 180.30094 * 8 7 6 10 10 C 1.46501 * 120.00196 * 0.28986 * 9 8 7 11 11 C 1.53002 * 109.47037 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.47152 * 304.99989 * 11 10 9 13 13 O 1.42896 * 109.47040 * 65.00029 * 11 10 9 14 14 C 1.53004 * 109.46892 * 185.00320 * 11 10 9 15 15 N 1.46495 * 109.47125 * 179.97438 * 14 11 10 16 16 C 1.34771 * 119.99998 * 179.97438 * 15 14 11 17 17 O 1.21284 * 120.00275 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00002 * 180.02562 * 16 15 14 19 19 S 1.80995 * 109.47140 * 180.02562 * 18 16 15 20 20 C 1.76201 * 100.00233 * 180.02562 * 19 18 16 21 21 H 1.08007 * 119.99619 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00190 * 180.02562 * 20 19 18 23 23 N 1.31626 * 120.00258 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99790 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47045 * 90.00161 * 24 22 20 26 26 H 1.48493 * 109.46668 * 209.99775 * 24 22 20 27 27 H 1.48498 * 109.47164 * 330.00096 * 24 22 20 28 28 H 1.08002 * 119.82377 * 180.02562 * 5 4 3 29 29 H 1.07995 * 119.82910 * 179.97438 * 6 5 4 30 30 H 0.97004 * 119.99775 * 180.29740 * 9 8 7 31 31 H 1.09000 * 109.47055 * 300.00131 * 10 9 8 32 32 H 1.08999 * 109.46755 * 59.99792 * 10 9 8 33 33 H 0.96699 * 113.99865 * 60.00453 * 13 11 10 34 34 H 1.09003 * 109.46952 * 299.99792 * 14 11 10 35 35 H 1.09001 * 109.47267 * 59.99637 * 14 11 10 36 36 H 0.96999 * 120.00124 * 0.02562 * 15 14 11 37 37 H 1.09003 * 109.47047 * 300.00115 * 18 16 15 38 38 H 1.08996 * 109.47061 * 60.00436 * 18 16 15 39 39 H 0.96999 * 120.00418 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2367 -0.1878 -1.1344 5 6 4.5551 -0.1860 -1.1303 6 6 5.2518 0.0110 0.0521 7 7 4.6015 0.1995 1.1866 8 6 3.2742 0.2067 1.1975 9 7 2.5894 0.4100 2.3829 10 6 3.3294 0.6243 3.6290 11 6 2.3421 0.8212 4.7811 12 1 1.6567 1.6329 4.5376 13 8 1.6008 -0.3835 4.9841 14 6 3.1107 1.1684 6.0577 15 7 2.1654 1.3574 7.1607 16 6 2.6188 1.6716 8.3904 17 8 3.8094 1.7982 8.5838 18 6 1.6463 1.8655 9.5253 19 16 2.5555 2.2764 11.0354 20 6 1.2135 2.4427 12.1650 21 1 0.1994 2.2940 11.8243 22 6 1.4594 2.7658 13.4922 23 7 2.6953 2.9475 13.9073 24 14 0.0365 2.9427 14.6896 25 1 -0.2457 1.6285 15.3206 26 1 0.3935 3.9297 15.7400 27 1 -1.1692 3.4106 13.9598 28 1 5.0953 -0.3388 -2.0530 29 1 6.3317 0.0105 0.0457 30 1 1.6194 0.4105 2.3887 31 1 3.9568 -0.2434 3.8328 32 1 3.9561 1.5109 3.5315 33 1 2.1480 -1.1495 5.2051 34 1 3.7962 0.3566 6.3013 35 1 3.6762 2.0872 5.9028 36 1 1.2132 1.2558 7.0062 37 1 0.9611 2.6775 9.2818 38 1 1.0806 0.9468 9.6800 39 1 2.8672 3.1737 14.8347 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105753508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:23 Heat of formation + Delta-G solvation = -33.254655 kcal Electronic energy + Delta-G solvation = -24320.561496 eV Core-core repulsion = 20388.733687 eV Total energy + Delta-G solvation = -3931.827810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.18156 -40.75190 -39.21568 -37.87112 -36.93533 -35.32335 -34.87779 -34.58815 -32.57463 -31.43100 -29.79843 -27.70393 -26.92594 -26.33176 -24.02304 -23.01415 -21.73893 -20.65482 -19.89093 -19.38210 -18.70694 -17.98103 -17.71119 -17.42732 -16.88466 -16.60475 -16.56598 -16.18801 -16.11041 -15.71868 -15.32578 -15.11218 -14.81673 -14.68981 -14.41198 -14.38340 -14.24074 -14.18245 -13.79406 -13.76899 -13.17504 -13.16475 -12.89157 -12.67034 -12.62340 -12.40196 -12.12397 -11.75198 -11.39557 -11.30086 -11.14822 -10.94724 -10.28663 -10.24659 -10.15126 -9.04448 -8.66730 -8.35300 -6.13078 -0.55882 0.22475 1.25821 1.32170 1.41937 1.45543 1.55754 1.60234 1.72843 1.75900 2.25311 2.29411 2.45526 2.83703 2.98908 3.15370 3.29845 3.35969 3.46864 3.62173 3.69799 3.88505 3.95225 4.05245 4.15441 4.28780 4.43655 4.49037 4.51517 4.66583 4.71851 4.95504 5.20022 5.37980 5.41586 5.72740 5.80848 6.16783 6.19311 6.45646 6.46617 6.65298 6.79457 7.06291 7.22327 8.73821 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.030981 B = 0.001626 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.552666 B =17214.928623 C =17986.606864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.285 3.715 3 C 0.034 3.966 4 N -0.393 5.393 5 C -0.002 4.002 6 C 0.159 3.841 7 N -0.509 5.509 8 C 0.404 3.596 9 N -0.694 5.694 10 C 0.104 3.896 11 C 0.101 3.899 12 H 0.119 0.881 13 O -0.564 6.564 14 C 0.092 3.908 15 N -0.708 5.708 16 C 0.535 3.465 17 O -0.564 6.564 18 C -0.132 4.132 19 S -0.148 6.148 20 C -0.548 4.548 21 H 0.082 0.918 22 C 0.015 3.985 23 N -0.910 5.910 24 Si 0.997 3.003 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.259 1.259 28 H 0.215 0.785 29 H 0.224 0.776 30 H 0.415 0.585 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.393 0.607 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.416 0.584 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.198 -7.515 -31.529 32.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.031 4.031 3 C -0.111 4.111 4 N -0.108 5.108 5 C -0.169 4.169 6 C -0.007 4.007 7 N -0.232 5.232 8 C 0.162 3.838 9 N -0.324 5.324 10 C -0.020 4.020 11 C 0.040 3.960 12 H 0.137 0.863 13 O -0.372 6.372 14 C -0.032 4.032 15 N -0.362 5.362 16 C 0.321 3.679 17 O -0.442 6.442 18 C -0.283 4.283 19 S 0.079 5.921 20 C -0.696 4.696 21 H 0.100 0.900 22 C -0.190 4.190 23 N -0.546 5.546 24 Si 0.819 3.181 25 H -0.193 1.193 26 H -0.202 1.202 27 H -0.183 1.183 28 H 0.232 0.768 29 H 0.240 0.760 30 H 0.253 0.747 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.243 0.757 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.253 0.747 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.059 -6.844 -30.971 31.977 hybrid contribution -1.824 -0.323 0.720 1.987 sum 2.235 -7.167 -30.252 31.169 Atomic orbital electron populations 1.81317 1.12324 1.10240 1.07198 1.25038 0.91735 0.92910 0.93458 1.16374 0.86173 1.17438 0.91118 1.68100 1.11577 1.05320 1.25831 1.24179 0.88194 1.02468 1.02070 1.24712 1.03860 0.85747 0.86416 1.68346 1.04666 1.19088 1.31085 1.18984 0.89870 0.89041 0.85866 1.44505 1.09039 1.74399 1.04419 1.22028 0.94147 1.04198 0.81668 1.22230 0.93752 0.88944 0.91027 0.86331 1.86607 1.38452 1.19617 1.92513 1.21982 0.92334 1.03078 0.85830 1.45578 1.11679 1.71528 1.07463 1.19980 0.88433 0.75590 0.83900 1.90698 1.18279 1.51436 1.83786 1.23382 1.01825 1.06261 0.96842 1.85512 1.13994 1.91544 1.01049 1.23214 0.94141 1.55430 0.96840 0.90027 1.26101 0.99538 0.93879 0.99512 1.70171 1.21318 1.45610 1.17548 0.84970 0.77541 0.78430 0.77143 1.19317 1.20240 1.18341 0.76842 0.75997 0.74698 0.89346 0.89045 0.75709 0.90688 0.90351 0.74660 0.87402 0.87385 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -9.86 18.54 19.00 0.35 -9.50 16 2 C 0.28 5.34 14.32 88.33 1.27 6.61 16 3 C 0.03 0.51 6.61 40.77 0.27 0.78 16 4 N -0.39 -5.16 10.42 -187.88 -1.96 -7.12 16 5 C 0.00 -0.01 11.21 84.79 0.95 0.94 16 6 C 0.16 0.51 11.22 84.75 0.95 1.46 16 7 N -0.51 -4.95 9.72 -191.79 -1.86 -6.82 16 8 C 0.40 4.97 7.48 133.52 1.00 5.97 16 9 N -0.69 -7.40 5.56 -344.08 -1.91 -9.31 16 10 C 0.10 0.87 5.34 86.38 0.46 1.33 16 11 C 0.10 0.98 3.09 30.60 0.09 1.08 16 12 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 13 O -0.56 -6.29 13.03 -148.98 -1.94 -8.23 16 14 C 0.09 1.49 5.34 86.38 0.46 1.95 16 15 N -0.71 -15.64 5.45 -463.06 -2.52 -18.16 16 16 C 0.54 18.53 7.85 87.66 0.69 19.21 16 17 O -0.56 -24.63 15.86 -3.04 -0.05 -24.68 16 18 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 19 S -0.15 -8.11 20.57 -56.49 -1.16 -9.27 16 20 C -0.55 -31.15 9.50 67.95 0.65 -30.51 16 21 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 22 C 0.01 0.83 5.49 84.86 0.47 1.29 16 23 N -0.91 -55.49 13.22 21.65 0.29 -55.21 16 24 Si 1.00 43.40 29.55 68.60 2.03 45.43 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 26 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 27 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 28 H 0.22 -0.70 8.06 -2.91 -0.02 -0.72 16 29 H 0.22 -1.26 8.06 -2.91 -0.02 -1.28 16 30 H 0.42 4.80 7.32 -92.70 -0.68 4.12 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.39 2.57 9.05 -74.06 -0.67 1.90 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.42 7.24 8.35 -92.71 -0.77 6.47 16 37 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 38 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 39 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -84.91 370.78 -2.03 -86.95 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -0.98 Total: 10.45 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 7.69 Total: 5.47 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -7.62 Total: -106.12 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -1.99 Total: -32.91 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.27 kcal Total: -84.91 -2.03 -86.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105753508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.691 kcal (2) G-P(sol) polarization free energy of solvation -84.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds