Wall clock time and date at job start Tue Mar 31 2020 19:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 N 1.31040 * 119.06803 * 258.82868 * 3 2 1 5 5 C 1.35149 * 120.55371 * 180.02562 * 4 3 2 6 6 N 1.31903 * 120.57338 * 179.97438 * 5 4 3 7 7 C 1.46493 * 120.00105 * 0.02562 * 6 5 4 8 8 C 1.52999 * 109.47138 * 120.00559 * 7 6 5 9 9 H 1.09007 * 109.46873 * 304.99935 * 8 7 6 10 10 O 1.42900 * 109.47274 * 65.00124 * 8 7 6 11 11 C 1.53002 * 109.47082 * 184.99825 * 8 7 6 12 12 N 1.46506 * 109.46913 * 179.97438 * 11 8 7 13 13 C 1.34779 * 119.99599 * 180.02562 * 12 11 8 14 14 O 1.21275 * 120.00200 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99471 * 180.02562 * 13 12 11 16 16 S 1.81006 * 109.46809 * 180.02562 * 15 13 12 17 17 C 1.76194 * 99.99942 * 179.97438 * 16 15 13 18 18 H 1.08007 * 120.00343 * 359.97438 * 17 16 15 19 19 C 1.38799 * 120.00358 * 180.02562 * 17 16 15 20 20 N 1.31637 * 119.99832 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00592 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47119 * 59.99394 * 21 19 17 23 23 H 1.48499 * 109.47158 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46679 * 299.99877 * 21 19 17 25 25 C 1.46886 * 118.85234 * 359.97438 * 5 4 3 26 26 C 1.34955 * 118.30995 * 359.97438 * 25 5 4 27 27 N 1.36217 * 119.06939 * 78.84966 * 3 2 1 28 28 H 0.96997 * 119.43222 * 0.02894 * 27 3 2 29 29 H 1.09009 * 109.47157 * 240.00410 * 7 6 5 30 30 H 1.09002 * 109.47240 * 359.97438 * 7 6 5 31 31 H 0.96698 * 114.00159 * 59.99863 * 10 8 7 32 32 H 1.08994 * 109.47658 * 300.00031 * 11 8 7 33 33 H 1.09008 * 109.46781 * 60.00176 * 11 8 7 34 34 H 0.96994 * 120.00029 * 0.02562 * 12 11 8 35 35 H 1.09003 * 109.47410 * 299.99487 * 15 13 12 36 36 H 1.08998 * 109.47587 * 60.00019 * 15 13 12 37 37 H 0.96992 * 120.00222 * 180.02562 * 20 19 17 38 38 H 1.08005 * 120.84412 * 179.72626 * 25 5 4 39 39 H 1.07998 * 120.35456 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2045 0.2228 1.1236 5 6 4.5556 0.2307 1.1579 6 7 5.1967 0.4548 2.2887 7 6 4.4441 0.6975 3.5218 8 6 4.8024 -0.3710 4.5566 9 1 4.6326 -1.3602 4.1312 10 8 6.1778 -0.2389 4.9211 11 6 3.9265 -0.1925 5.7983 12 7 4.2692 -1.2161 6.7889 13 6 3.6211 -1.2544 7.9700 14 8 2.7540 -0.4420 8.2126 15 6 3.9741 -2.3069 8.9892 16 16 2.9367 -2.0968 10.4575 17 6 3.5435 -3.4183 11.4525 18 1 4.3303 -4.0575 11.0800 19 6 3.0096 -3.6385 12.7146 20 7 2.0502 -2.8597 13.1685 21 14 3.6533 -5.0391 13.7698 22 1 5.1033 -4.8421 14.0229 23 1 2.9238 -5.0602 15.0631 24 1 3.4449 -6.3280 13.0623 25 6 5.2976 -0.0146 -0.0858 26 6 4.5955 -0.2392 -1.2162 27 7 3.2299 -0.2293 -1.1681 28 1 2.7232 -0.3890 -1.9796 29 1 4.6971 1.6825 3.9141 30 1 3.3757 0.6547 3.3098 31 1 6.4017 0.6188 5.3073 32 1 4.0962 0.7965 6.2237 33 1 2.8773 -0.2934 5.5203 34 1 4.9625 -1.8660 6.5947 35 1 3.8047 -3.2960 8.5637 36 1 5.0231 -2.2059 9.2676 37 1 1.6774 -3.0134 14.0506 38 1 6.3776 -0.0112 -0.0961 39 1 5.1075 -0.4228 -2.1492 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105753879.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:49 Heat of formation + Delta-G solvation = 21.652012 kcal Electronic energy + Delta-G solvation = -24271.587022 eV Core-core repulsion = 20342.140144 eV Total energy + Delta-G solvation = -3929.446878 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.56287 -39.30332 -37.93940 -37.46513 -36.20505 -33.97017 -33.80051 -32.38255 -32.30451 -30.31217 -28.68846 -26.38354 -25.86443 -25.34613 -23.06149 -21.76040 -20.63562 -20.15900 -18.86229 -18.38502 -17.85208 -16.95822 -16.34469 -16.20591 -16.13014 -15.71718 -15.24461 -14.92548 -14.76021 -14.61817 -14.27017 -14.07181 -13.96259 -13.86152 -13.78860 -13.51325 -13.10443 -12.97957 -12.54224 -12.48270 -12.11683 -11.65234 -11.29635 -10.99950 -10.99893 -10.97029 -10.86048 -10.73736 -10.26377 -9.77313 -9.62932 -9.34042 -9.01835 -8.81007 -8.18695 -8.13926 -6.44812 -6.16944 -3.87204 -0.14875 0.73865 1.28328 1.81310 2.12753 2.84838 3.03691 3.17211 3.17868 3.27214 3.30884 3.34970 3.58472 3.81512 3.90794 4.25153 4.33283 4.36354 4.50966 4.80020 4.88516 4.95297 5.05140 5.17874 5.25708 5.33458 5.47161 5.61591 5.63846 5.75085 5.84256 5.94235 5.99298 6.10157 6.21787 6.34478 6.67761 7.07499 7.48132 7.59121 7.64011 7.81783 8.39857 8.69471 9.28088 10.90459 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.001731 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.614597 B =16176.358653 C =16821.541683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.327 5.327 2 C 0.249 3.751 3 C 0.500 3.500 4 N -0.517 5.517 5 C 0.333 3.667 6 N -0.501 5.501 7 C 0.011 3.989 8 C 0.111 3.889 9 H 0.099 0.901 10 O -0.548 6.548 11 C 0.091 3.909 12 N -0.732 5.732 13 C 0.531 3.469 14 O -0.521 6.521 15 C -0.152 4.152 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.178 4.178 26 C 0.108 3.892 27 N -0.624 5.624 28 H 0.424 0.576 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.375 0.625 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.402 0.598 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.268 0.732 38 H 0.161 0.839 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.157 5.988 -36.797 37.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.005 5.005 2 C -0.071 4.071 3 C 0.222 3.778 4 N -0.245 5.245 5 C 0.057 3.943 6 N -0.220 5.220 7 C -0.120 4.120 8 C 0.051 3.949 9 H 0.117 0.883 10 O -0.353 6.353 11 C -0.034 4.034 12 N -0.387 5.387 13 C 0.317 3.683 14 O -0.395 6.395 15 C -0.303 4.303 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.208 4.208 26 C -0.016 4.016 27 N -0.246 5.246 28 H 0.261 0.739 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.222 0.778 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.237 0.763 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.179 0.821 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 4.683 7.083 -35.001 36.016 hybrid contribution 1.446 -1.739 -0.484 2.313 sum 6.129 5.344 -35.485 36.404 Atomic orbital electron populations 1.81398 1.10710 1.04212 1.04155 1.24352 0.90687 0.96189 0.95907 1.16621 0.85344 0.92299 0.83572 1.69282 1.12038 1.20869 1.22297 1.21228 0.83735 0.95168 0.94211 1.73526 1.33088 1.17910 0.97426 1.22650 0.99195 0.99102 0.91081 1.22059 0.81824 0.99441 0.91619 0.88279 1.86586 1.24882 1.40194 1.83656 1.21922 0.99717 0.92843 0.88938 1.45860 1.41728 1.34537 1.16574 1.20318 0.80989 0.85316 0.81642 1.90695 1.30967 1.40233 1.77628 1.23524 1.05975 0.99769 1.01041 1.85373 1.47614 1.43219 1.07220 1.22840 1.24932 1.17084 1.03492 0.90961 1.24995 0.94763 0.96993 0.96870 1.70013 1.24595 1.37199 1.18554 0.86220 0.78942 0.81336 0.78970 1.19934 1.20836 1.19958 1.22270 1.01800 1.06980 0.89711 1.21906 0.80775 0.98139 1.00734 1.41959 1.07121 1.65001 1.10507 0.73872 0.89730 0.90662 0.77751 0.91251 0.90818 0.76315 0.89254 0.89141 0.92170 0.82132 0.80077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.33 -2.58 18.54 41.84 0.78 -1.80 16 2 C 0.25 1.40 15.62 -22.47 -0.35 1.05 16 3 C 0.50 2.34 7.48 -157.23 -1.18 1.17 16 4 N -0.52 -4.23 8.73 -10.42 -0.09 -4.32 16 5 C 0.33 2.87 7.60 -155.91 -1.19 1.68 16 6 N -0.50 -5.43 10.57 -59.19 -0.63 -6.05 16 7 C 0.01 0.12 5.99 -4.05 -0.02 0.09 16 8 C 0.11 1.22 3.30 -26.73 -0.09 1.13 16 9 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 10 O -0.55 -6.20 13.03 -35.23 -0.46 -6.66 16 11 C 0.09 1.18 5.34 -4.04 -0.02 1.15 16 12 N -0.73 -10.93 5.45 -60.29 -0.33 -11.26 16 13 C 0.53 10.59 7.85 -10.99 -0.09 10.51 16 14 O -0.52 -12.43 15.86 5.56 0.09 -12.34 16 15 C -0.15 -3.25 6.16 36.01 0.22 -3.03 16 16 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 17 C -0.54 -15.66 9.50 30.94 0.29 -15.37 16 18 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.72 13.22 55.49 0.73 -25.98 16 21 Si 0.92 21.88 29.55 -169.99 -5.02 16.85 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 25 C -0.18 -0.77 10.29 -37.25 -0.38 -1.15 16 26 C 0.11 0.04 11.28 -16.57 -0.19 -0.15 16 27 N -0.62 -0.36 5.31 -12.04 -0.06 -0.43 16 28 H 0.42 -1.25 8.73 -40.82 -0.36 -1.61 16 29 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 30 H 0.08 0.83 6.70 -51.93 -0.35 0.48 16 31 H 0.38 3.24 9.05 45.56 0.41 3.65 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 34 H 0.40 5.19 8.35 -40.82 -0.34 4.85 16 35 H 0.09 1.77 8.14 -51.91 -0.42 1.34 16 36 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 37 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.16 0.53 8.06 -52.48 -0.42 0.11 16 39 H 0.18 -0.71 8.06 -52.49 -0.42 -1.14 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -40.84 371.95 -8.24 -49.08 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -3.56 Total: 2.10 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -3.08 Total: -0.88 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.40 Total: -49.84 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.37 Total: -19.00 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -40.84 -8.24 -49.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105753879.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.736 kcal (2) G-P(sol) polarization free energy of solvation -40.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds