Wall clock time and date at job start Tue Mar 31 2020 19:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 N 1.31040 * 119.06803 * 258.82868 * 3 2 1 5 5 C 1.35149 * 120.55371 * 180.02562 * 4 3 2 6 6 N 1.31903 * 120.57338 * 179.97438 * 5 4 3 7 7 C 1.46493 * 120.00105 * 0.02562 * 6 5 4 8 8 C 1.52999 * 109.47138 * 120.00559 * 7 6 5 9 9 H 1.09007 * 109.46873 * 304.99935 * 8 7 6 10 10 O 1.42900 * 109.47274 * 65.00124 * 8 7 6 11 11 C 1.53002 * 109.47082 * 184.99825 * 8 7 6 12 12 N 1.46506 * 109.46913 * 179.97438 * 11 8 7 13 13 C 1.34779 * 119.99599 * 180.02562 * 12 11 8 14 14 O 1.21275 * 120.00200 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99471 * 180.02562 * 13 12 11 16 16 S 1.81006 * 109.46809 * 180.02562 * 15 13 12 17 17 C 1.76194 * 99.99942 * 179.97438 * 16 15 13 18 18 H 1.08007 * 120.00343 * 359.97438 * 17 16 15 19 19 C 1.38799 * 120.00358 * 180.02562 * 17 16 15 20 20 N 1.31637 * 119.99832 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00592 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47119 * 59.99394 * 21 19 17 23 23 H 1.48499 * 109.47158 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46679 * 299.99877 * 21 19 17 25 25 C 1.46886 * 118.85234 * 359.97438 * 5 4 3 26 26 C 1.34955 * 118.30995 * 359.97438 * 25 5 4 27 27 N 1.36217 * 119.06939 * 78.84966 * 3 2 1 28 28 H 0.96997 * 119.43222 * 0.02894 * 27 3 2 29 29 H 1.09009 * 109.47157 * 240.00410 * 7 6 5 30 30 H 1.09002 * 109.47240 * 359.97438 * 7 6 5 31 31 H 0.96698 * 114.00159 * 59.99863 * 10 8 7 32 32 H 1.08994 * 109.47658 * 300.00031 * 11 8 7 33 33 H 1.09008 * 109.46781 * 60.00176 * 11 8 7 34 34 H 0.96994 * 120.00029 * 0.02562 * 12 11 8 35 35 H 1.09003 * 109.47410 * 299.99487 * 15 13 12 36 36 H 1.08998 * 109.47587 * 60.00019 * 15 13 12 37 37 H 0.96992 * 120.00222 * 180.02562 * 20 19 17 38 38 H 1.08005 * 120.84412 * 179.72626 * 25 5 4 39 39 H 1.07998 * 120.35456 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2045 0.2228 1.1236 5 6 4.5556 0.2307 1.1579 6 7 5.1967 0.4548 2.2887 7 6 4.4441 0.6975 3.5218 8 6 4.8024 -0.3710 4.5566 9 1 4.6326 -1.3602 4.1312 10 8 6.1778 -0.2389 4.9211 11 6 3.9265 -0.1925 5.7983 12 7 4.2692 -1.2161 6.7889 13 6 3.6211 -1.2544 7.9700 14 8 2.7540 -0.4420 8.2126 15 6 3.9741 -2.3069 8.9892 16 16 2.9367 -2.0968 10.4575 17 6 3.5435 -3.4183 11.4525 18 1 4.3303 -4.0575 11.0800 19 6 3.0096 -3.6385 12.7146 20 7 2.0502 -2.8597 13.1685 21 14 3.6533 -5.0391 13.7698 22 1 5.1033 -4.8421 14.0229 23 1 2.9238 -5.0602 15.0631 24 1 3.4449 -6.3280 13.0623 25 6 5.2976 -0.0146 -0.0858 26 6 4.5955 -0.2392 -1.2162 27 7 3.2299 -0.2293 -1.1681 28 1 2.7232 -0.3890 -1.9796 29 1 4.6971 1.6825 3.9141 30 1 3.3757 0.6547 3.3098 31 1 6.4017 0.6188 5.3073 32 1 4.0962 0.7965 6.2237 33 1 2.8773 -0.2934 5.5203 34 1 4.9625 -1.8660 6.5947 35 1 3.8047 -3.2960 8.5637 36 1 5.0231 -2.2059 9.2676 37 1 1.6774 -3.0134 14.0506 38 1 6.3776 -0.0112 -0.0961 39 1 5.1075 -0.4228 -2.1492 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105753879.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:48 Heat of formation + Delta-G solvation = -13.501909 kcal Electronic energy + Delta-G solvation = -24273.111410 eV Core-core repulsion = 20342.140144 eV Total energy + Delta-G solvation = -3930.971266 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.94828 -40.75186 -38.92026 -38.05205 -36.75018 -35.31395 -34.59031 -34.25948 -32.86346 -31.58669 -29.84579 -27.70934 -26.81681 -26.59774 -23.69223 -22.59839 -21.70565 -20.97799 -19.87168 -19.22517 -18.83532 -18.02335 -17.69813 -17.27977 -16.88617 -16.69394 -16.50207 -16.35095 -16.22417 -15.66970 -15.27493 -14.88533 -14.70988 -14.58700 -14.48710 -14.41748 -14.33700 -14.18189 -13.90378 -13.47509 -13.17965 -13.08953 -12.86455 -12.73901 -12.63596 -12.11793 -11.77074 -11.46136 -11.31611 -11.17134 -11.13540 -10.88332 -10.30268 -10.24180 -10.17231 -8.68381 -8.60291 -8.35063 -6.13859 -0.60430 0.47773 0.87164 1.24959 1.35383 1.43851 1.45226 1.55628 1.56787 1.65183 2.20147 2.27304 2.51973 2.71340 2.98666 3.17540 3.31116 3.47810 3.58145 3.76293 3.91282 3.97074 4.18215 4.19977 4.26836 4.36004 4.48126 4.48846 4.65221 4.79336 4.89055 5.01630 5.12333 5.34377 5.40873 5.47698 5.79156 6.08186 6.19088 6.44338 6.67158 6.76859 7.02180 7.05636 7.18836 8.74031 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.001731 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.614597 B =16176.358653 C =16821.541683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C 0.274 3.726 3 C 0.509 3.491 4 N -0.563 5.563 5 C 0.336 3.664 6 N -0.559 5.559 7 C 0.022 3.978 8 C 0.130 3.870 9 H 0.092 0.908 10 O -0.557 6.557 11 C 0.094 3.906 12 N -0.707 5.707 13 C 0.533 3.467 14 O -0.566 6.566 15 C -0.129 4.129 16 S -0.150 6.150 17 C -0.548 4.548 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.262 1.262 23 H -0.278 1.278 24 H -0.262 1.262 25 C -0.216 4.216 26 C 0.156 3.844 27 N -0.595 5.595 28 H 0.447 0.553 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.386 0.614 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.416 0.584 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.272 0.728 38 H 0.169 0.831 39 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.035 4.379 -40.130 41.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.043 5.043 2 C -0.047 4.047 3 C 0.231 3.769 4 N -0.293 5.293 5 C 0.061 3.939 6 N -0.280 5.280 7 C -0.109 4.109 8 C 0.069 3.931 9 H 0.110 0.890 10 O -0.364 6.364 11 C -0.031 4.031 12 N -0.361 5.361 13 C 0.319 3.681 14 O -0.445 6.445 15 C -0.280 4.280 16 S 0.077 5.923 17 C -0.696 4.696 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.186 1.186 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.246 4.246 26 C 0.031 3.969 27 N -0.217 5.217 28 H 0.289 0.711 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.235 0.765 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.253 0.747 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.080 0.920 38 H 0.186 0.814 39 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 6.556 5.460 -38.453 39.388 hybrid contribution 0.824 -1.219 0.176 1.482 sum 7.379 4.241 -38.277 39.212 Atomic orbital electron populations 1.81429 1.11882 1.05467 1.05502 1.24381 0.90673 0.94981 0.94640 1.16477 0.84771 0.91352 0.84285 1.69198 1.12533 1.23246 1.24301 1.21830 0.84163 0.92752 0.95123 1.73538 1.33125 1.23519 0.97848 1.22405 0.98401 0.98429 0.91713 1.21819 0.81251 0.99493 0.90528 0.88976 1.86547 1.24800 1.41207 1.83803 1.22048 0.99871 0.92067 0.89143 1.45628 1.40650 1.34703 1.15132 1.20095 0.80842 0.84517 0.82614 1.90683 1.33197 1.41897 1.78720 1.23364 1.05187 1.01300 0.98165 1.85550 1.50747 1.44347 1.11633 1.23181 1.25276 1.17120 1.04035 0.89915 1.26162 0.94762 0.99972 0.98331 1.70181 1.26103 1.39330 1.19146 0.84978 0.78622 0.77473 0.76753 1.18630 1.20267 1.18642 1.22388 1.02504 1.10454 0.89267 1.22781 0.79829 0.92852 1.01474 1.42134 1.07764 1.61702 1.10081 0.71118 0.90240 0.92013 0.76476 0.91235 0.91620 0.74717 0.87302 0.87189 0.91955 0.81373 0.74161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.36 -5.60 18.54 19.00 0.35 -5.25 16 2 C 0.27 2.79 15.62 88.33 1.38 4.17 16 3 C 0.51 3.83 7.48 135.42 1.01 4.84 16 4 N -0.56 -9.02 8.73 -186.87 -1.63 -10.65 16 5 C 0.34 5.65 7.60 136.53 1.04 6.69 16 6 N -0.56 -12.50 10.57 -341.18 -3.60 -16.10 16 7 C 0.02 0.50 5.99 86.38 0.52 1.01 16 8 C 0.13 2.90 3.30 30.59 0.10 3.00 16 9 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 10 O -0.56 -12.47 13.03 -148.98 -1.94 -14.41 16 11 C 0.09 2.46 5.34 86.38 0.46 2.92 16 12 N -0.71 -20.85 5.45 -463.05 -2.52 -23.37 16 13 C 0.53 21.42 7.85 87.66 0.69 22.11 16 14 O -0.57 -27.92 15.86 -3.01 -0.05 -27.97 16 15 C -0.13 -5.47 6.16 71.24 0.44 -5.03 16 16 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 17 C -0.55 -32.28 9.50 67.95 0.65 -31.64 16 18 H 0.08 4.52 7.80 -2.91 -0.02 4.50 16 19 C 0.01 0.73 5.49 84.86 0.47 1.19 16 20 N -0.91 -57.23 13.22 21.65 0.29 -56.94 16 21 Si 1.00 44.64 29.55 68.60 2.03 46.66 16 22 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 25 C -0.22 -1.34 10.29 23.78 0.24 -1.09 16 26 C 0.16 -0.65 11.28 83.19 0.94 0.29 16 27 N -0.59 1.75 5.31 -192.00 -1.02 0.73 16 28 H 0.45 -4.88 8.73 -92.71 -0.81 -5.69 16 29 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.06 1.48 6.70 -2.39 -0.02 1.46 16 31 H 0.39 6.62 9.05 -74.06 -0.67 5.95 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 33 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.42 10.19 8.35 -92.71 -0.77 9.42 16 35 H 0.11 4.19 8.14 -2.39 -0.02 4.17 16 36 H 0.11 4.23 8.14 -2.40 -0.02 4.21 16 37 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 38 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.24 -3.72 8.06 -2.91 -0.02 -3.74 16 Total: -1.00 -94.64 371.95 -2.44 -97.08 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -1.11 Total: 11.56 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 7.93 Total: 8.47 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -8.14 Total: -111.58 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -1.99 Total: -42.38 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -94.64 -2.44 -97.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105753879.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.580 kcal (2) G-P(sol) polarization free energy of solvation -94.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds