Wall clock time and date at job start Tue Mar 31 2020 19:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 N 1.31033 * 119.06636 * 36.65359 * 3 2 1 5 5 C 1.35161 * 120.54802 * 180.21839 * 4 3 2 6 6 N 1.31904 * 120.56984 * 179.77738 * 5 4 3 7 7 C 1.46491 * 120.00285 * 359.71839 * 6 5 4 8 8 C 1.53003 * 109.47329 * 119.99933 * 7 6 5 9 9 H 1.09008 * 109.46613 * 59.99822 * 8 7 6 10 10 O 1.42902 * 109.47069 * 300.00453 * 8 7 6 11 11 C 1.52996 * 109.47530 * 179.97438 * 8 7 6 12 12 N 1.46498 * 109.47059 * 184.99929 * 11 8 7 13 13 C 1.34777 * 119.99828 * 179.72339 * 12 11 8 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 11 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 11 16 16 S 1.81000 * 109.47389 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99715 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00516 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99710 * 179.97438 * 17 16 15 20 20 N 1.31634 * 120.00163 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00011 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46661 * 60.00586 * 21 19 17 23 23 H 1.48501 * 109.47391 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47355 * 300.00441 * 21 19 17 25 25 C 1.46879 * 118.85536 * 359.50513 * 5 4 3 26 26 C 1.34957 * 118.30418 * 0.24819 * 25 5 4 27 27 N 1.36216 * 119.06868 * 216.38552 * 3 2 1 28 28 H 0.97010 * 119.42854 * 0.03157 * 27 3 2 29 29 H 1.09000 * 109.47563 * 359.97438 * 7 6 5 30 30 H 1.09002 * 109.47768 * 240.00173 * 7 6 5 31 31 H 0.96696 * 113.99765 * 299.99828 * 10 8 7 32 32 H 1.09004 * 109.47066 * 65.00196 * 11 8 7 33 33 H 1.08994 * 109.46974 * 305.00344 * 11 8 7 34 34 H 0.97001 * 120.00384 * 0.02562 * 12 11 8 35 35 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 36 36 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 37 37 H 0.96991 * 119.99795 * 179.97438 * 20 19 17 38 38 H 1.08003 * 120.84965 * 180.22903 * 25 5 4 39 39 H 1.08010 * 120.35077 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 7 3.2051 -0.9179 -0.6837 5 6 4.5562 -0.9480 -0.7010 6 7 5.1979 -1.8751 -1.3856 7 6 4.4458 -2.8875 -2.1308 8 6 4.8013 -2.7963 -3.6162 9 1 5.8698 -2.9691 -3.7453 10 8 4.4662 -1.4967 -4.1071 11 6 4.0163 -3.8541 -4.3944 12 7 4.4440 -3.8469 -5.7956 13 6 3.8891 -4.7054 -6.6739 14 8 3.0320 -5.4804 -6.3055 15 6 4.3334 -4.7023 -8.1140 16 16 3.4090 -5.9577 -9.0334 17 6 4.1083 -5.7401 -10.6359 18 1 4.8734 -4.9946 -10.7946 19 6 3.6765 -6.5275 -11.6943 20 7 2.7443 -7.4365 -11.5009 21 14 4.4173 -6.2963 -13.3934 22 1 5.8800 -6.5461 -13.3338 23 1 3.7898 -7.2518 -14.3413 24 1 4.1709 -4.9069 -13.8561 25 6 5.2977 0.0731 0.0507 26 6 4.5950 1.0002 0.7348 27 7 3.2294 0.9594 0.7063 28 1 2.7222 1.6248 1.1973 29 1 3.3774 -2.7150 -2.0013 30 1 4.7013 -3.8788 -1.7564 31 1 3.5288 -1.2745 -4.0239 32 1 2.9510 -3.6301 -4.3386 33 1 4.2041 -4.8369 -3.9622 34 1 5.1297 -3.2273 -6.0902 35 1 4.1456 -3.7212 -8.5500 36 1 5.3993 -4.9248 -8.1657 37 1 2.4424 -7.9865 -12.2406 38 1 6.3776 0.0815 0.0561 39 1 5.1065 1.7665 1.2984 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105753880.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:52 Heat of formation + Delta-G solvation = 21.217949 kcal Electronic energy + Delta-G solvation = -24361.593042 eV Core-core repulsion = 20432.127342 eV Total energy + Delta-G solvation = -3929.465700 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.55238 -39.30889 -37.99247 -37.47325 -36.13574 -34.00794 -33.79284 -32.38265 -32.30137 -30.34004 -28.70974 -26.37480 -25.84818 -25.34063 -23.06640 -21.73586 -20.64186 -20.16001 -18.85615 -18.36877 -17.85198 -16.94238 -16.42230 -16.25199 -16.13725 -15.63557 -15.25018 -14.92578 -14.75965 -14.62002 -14.26668 -14.16258 -13.96999 -13.87695 -13.82868 -13.57979 -12.98986 -12.81183 -12.63138 -12.48362 -12.11341 -11.65063 -11.31746 -10.99928 -10.99892 -10.97089 -10.87970 -10.73757 -10.33305 -9.77468 -9.63865 -9.33896 -9.01810 -8.81227 -8.18637 -8.11710 -6.44773 -6.16934 -3.87174 -0.13966 0.75590 1.28089 1.81575 2.12795 2.84672 3.03944 3.17561 3.18834 3.27262 3.31042 3.35519 3.60609 3.82072 3.91627 4.25186 4.26439 4.37899 4.48325 4.82081 4.88530 5.04727 5.05155 5.17914 5.25282 5.33025 5.49001 5.60970 5.62896 5.76172 5.82420 5.95074 5.99715 6.11311 6.21751 6.33997 6.67860 7.08442 7.44257 7.54827 7.64050 7.81086 8.39894 8.69321 9.28120 10.90472 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.024873 B = 0.001686 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.447597 B =16599.067118 C =17049.962510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.328 5.328 2 C 0.250 3.750 3 C 0.499 3.501 4 N -0.515 5.515 5 C 0.338 3.662 6 N -0.503 5.503 7 C 0.011 3.989 8 C 0.107 3.893 9 H 0.110 0.890 10 O -0.553 6.553 11 C 0.092 3.908 12 N -0.732 5.732 13 C 0.531 3.469 14 O -0.521 6.521 15 C -0.152 4.152 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.177 4.177 26 C 0.107 3.893 27 N -0.624 5.624 28 H 0.424 0.576 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.372 0.628 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.402 0.598 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.268 0.732 38 H 0.160 0.840 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.961 22.521 30.744 38.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.006 5.006 2 C -0.071 4.071 3 C 0.220 3.780 4 N -0.244 5.244 5 C 0.061 3.939 6 N -0.221 5.221 7 C -0.120 4.120 8 C 0.047 3.953 9 H 0.127 0.873 10 O -0.357 6.357 11 C -0.033 4.033 12 N -0.387 5.387 13 C 0.317 3.683 14 O -0.395 6.395 15 C -0.303 4.303 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.207 4.207 26 C -0.016 4.016 27 N -0.246 5.246 28 H 0.261 0.739 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.219 0.781 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.236 0.764 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.178 0.822 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.130 19.884 30.261 36.344 hybrid contribution 1.028 2.021 -0.890 2.436 sum 4.158 21.905 29.370 36.875 Atomic orbital electron populations 1.81396 1.10729 1.04235 1.04243 1.24363 0.90697 0.95960 0.96058 1.16617 0.85312 0.86671 0.89355 1.69256 1.12027 1.21950 1.21125 1.21094 0.83698 0.94191 0.94870 1.73405 1.33273 1.04788 1.10675 1.22638 0.98965 0.96539 0.93884 1.22133 1.00427 0.82376 0.90320 0.87262 1.86591 1.30830 1.33202 1.85110 1.21912 0.99219 0.99786 0.82386 1.45871 1.43884 1.40316 1.08630 1.20320 0.81232 0.79489 0.87224 1.90697 1.30854 1.38657 1.79325 1.23525 1.05353 1.06809 0.94630 1.85373 1.51207 1.42871 1.03971 1.22841 1.26542 1.24500 0.94476 0.90960 1.24995 0.94937 0.94493 0.99188 1.70012 1.27428 1.20412 1.32503 0.86221 0.79212 0.78166 0.81874 1.19940 1.20835 1.19954 1.22259 1.01762 0.95635 1.01019 1.21890 0.80783 0.99870 0.99088 1.41944 1.07108 1.29026 1.46535 0.73908 0.91229 0.89183 0.78106 0.91391 0.90690 0.76365 0.89201 0.89198 0.92170 0.82218 0.80130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.33 -2.47 18.54 41.84 0.78 -1.70 16 2 C 0.25 1.32 15.62 -22.47 -0.35 0.97 16 3 C 0.50 2.20 7.48 -157.24 -1.18 1.02 16 4 N -0.52 -4.01 8.73 -10.42 -0.09 -4.10 16 5 C 0.34 2.86 7.60 -155.90 -1.18 1.67 16 6 N -0.50 -5.39 10.48 -59.19 -0.62 -6.01 16 7 C 0.01 0.12 6.01 -4.05 -0.02 0.09 16 8 C 0.11 1.16 3.27 -26.73 -0.09 1.07 16 9 H 0.11 1.22 8.14 -51.92 -0.42 0.79 16 10 O -0.55 -6.31 13.15 -35.23 -0.46 -6.78 16 11 C 0.09 1.18 5.31 -4.04 -0.02 1.16 16 12 N -0.73 -10.87 5.50 -60.30 -0.33 -11.20 16 13 C 0.53 10.57 7.85 -10.98 -0.09 10.49 16 14 O -0.52 -12.42 15.86 5.55 0.09 -12.33 16 15 C -0.15 -3.25 6.16 36.01 0.22 -3.03 16 16 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 17 C -0.54 -15.66 9.50 30.94 0.29 -15.37 16 18 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 20 N -0.87 -26.71 13.22 55.49 0.73 -25.97 16 21 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.18 -0.76 10.30 -37.25 -0.38 -1.15 16 26 C 0.11 0.04 11.28 -16.57 -0.19 -0.15 16 27 N -0.62 -0.30 5.31 -12.03 -0.06 -0.37 16 28 H 0.42 -1.28 8.73 -40.82 -0.36 -1.63 16 29 H 0.07 0.74 6.70 -51.93 -0.35 0.39 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.37 3.55 9.05 45.56 0.41 3.97 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.40 5.12 8.47 -40.82 -0.35 4.78 16 35 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 36 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 37 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.16 0.53 8.06 -52.48 -0.42 0.11 16 39 H 0.18 -0.70 8.06 -52.48 -0.42 -1.12 16 LS Contribution 372.15 15.07 5.61 5.61 Total: -1.00 -40.52 372.15 -8.25 -48.76 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -3.56 Total: 2.33 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -3.08 Total: -1.17 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.40 Total: -49.35 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.38 Total: -19.11 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -40.52 -8.25 -48.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105753880.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.981 kcal (2) G-P(sol) polarization free energy of solvation -40.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds