Wall clock time and date at job start Tue Mar 31 2020 19:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 N 1.31033 * 119.06636 * 36.65359 * 3 2 1 5 5 C 1.35161 * 120.54802 * 180.21839 * 4 3 2 6 6 N 1.31904 * 120.56984 * 179.77738 * 5 4 3 7 7 C 1.46491 * 120.00285 * 359.71839 * 6 5 4 8 8 C 1.53003 * 109.47329 * 119.99933 * 7 6 5 9 9 H 1.09008 * 109.46613 * 59.99822 * 8 7 6 10 10 O 1.42902 * 109.47069 * 300.00453 * 8 7 6 11 11 C 1.52996 * 109.47530 * 179.97438 * 8 7 6 12 12 N 1.46498 * 109.47059 * 184.99929 * 11 8 7 13 13 C 1.34777 * 119.99828 * 179.72339 * 12 11 8 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 11 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 11 16 16 S 1.81000 * 109.47389 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99715 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00516 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99710 * 179.97438 * 17 16 15 20 20 N 1.31634 * 120.00163 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00011 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46661 * 60.00586 * 21 19 17 23 23 H 1.48501 * 109.47391 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47355 * 300.00441 * 21 19 17 25 25 C 1.46879 * 118.85536 * 359.50513 * 5 4 3 26 26 C 1.34957 * 118.30418 * 0.24819 * 25 5 4 27 27 N 1.36216 * 119.06868 * 216.38552 * 3 2 1 28 28 H 0.97010 * 119.42854 * 0.03157 * 27 3 2 29 29 H 1.09000 * 109.47563 * 359.97438 * 7 6 5 30 30 H 1.09002 * 109.47768 * 240.00173 * 7 6 5 31 31 H 0.96696 * 113.99765 * 299.99828 * 10 8 7 32 32 H 1.09004 * 109.47066 * 65.00196 * 11 8 7 33 33 H 1.08994 * 109.46974 * 305.00344 * 11 8 7 34 34 H 0.97001 * 120.00384 * 0.02562 * 12 11 8 35 35 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 36 36 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 37 37 H 0.96991 * 119.99795 * 179.97438 * 20 19 17 38 38 H 1.08003 * 120.84965 * 180.22903 * 25 5 4 39 39 H 1.08010 * 120.35077 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 7 3.2051 -0.9179 -0.6837 5 6 4.5562 -0.9480 -0.7010 6 7 5.1979 -1.8751 -1.3856 7 6 4.4458 -2.8875 -2.1308 8 6 4.8013 -2.7963 -3.6162 9 1 5.8698 -2.9691 -3.7453 10 8 4.4662 -1.4967 -4.1071 11 6 4.0163 -3.8541 -4.3944 12 7 4.4440 -3.8469 -5.7956 13 6 3.8891 -4.7054 -6.6739 14 8 3.0320 -5.4804 -6.3055 15 6 4.3334 -4.7023 -8.1140 16 16 3.4090 -5.9577 -9.0334 17 6 4.1083 -5.7401 -10.6359 18 1 4.8734 -4.9946 -10.7946 19 6 3.6765 -6.5275 -11.6943 20 7 2.7443 -7.4365 -11.5009 21 14 4.4173 -6.2963 -13.3934 22 1 5.8800 -6.5461 -13.3338 23 1 3.7898 -7.2518 -14.3413 24 1 4.1709 -4.9069 -13.8561 25 6 5.2977 0.0731 0.0507 26 6 4.5950 1.0002 0.7348 27 7 3.2294 0.9594 0.7063 28 1 2.7222 1.6248 1.1973 29 1 3.3774 -2.7150 -2.0013 30 1 4.7013 -3.8788 -1.7564 31 1 3.5288 -1.2745 -4.0239 32 1 2.9510 -3.6301 -4.3386 33 1 4.2041 -4.8369 -3.9622 34 1 5.1297 -3.2273 -6.0902 35 1 4.1456 -3.7212 -8.5500 36 1 5.3993 -4.9248 -8.1657 37 1 2.4424 -7.9865 -12.2406 38 1 6.3776 0.0815 0.0561 39 1 5.1065 1.7665 1.2984 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105753880.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:52 Heat of formation + Delta-G solvation = -13.597352 kcal Electronic energy + Delta-G solvation = -24363.102747 eV Core-core repulsion = 20432.127342 eV Total energy + Delta-G solvation = -3930.975405 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.92554 -40.74668 -38.97113 -38.03116 -36.67858 -35.34397 -34.58955 -34.23843 -32.86665 -31.59261 -29.86943 -27.70799 -26.79089 -26.57423 -23.68729 -22.57461 -21.69201 -20.97014 -19.87003 -19.20454 -18.81741 -18.00740 -17.70621 -17.29602 -16.88564 -16.71808 -16.49646 -16.45509 -16.06940 -15.67697 -15.23432 -15.04823 -14.68124 -14.60914 -14.46550 -14.41399 -14.37126 -14.08986 -13.86740 -13.30336 -13.19955 -13.17742 -12.86560 -12.70576 -12.63086 -12.14150 -11.77129 -11.48270 -11.34423 -11.16377 -11.13436 -10.89433 -10.30077 -10.22466 -10.18011 -8.68207 -8.57385 -8.34963 -6.13722 -0.57666 0.49998 0.88907 1.25203 1.37699 1.43932 1.45412 1.55789 1.57168 1.67358 2.20997 2.27484 2.53477 2.74194 2.98792 3.21622 3.30915 3.40318 3.58604 3.77061 3.92059 4.02524 4.19744 4.22418 4.28327 4.36663 4.48903 4.51493 4.65339 4.82821 4.85057 5.06625 5.11647 5.35771 5.41008 5.49315 5.80945 6.09727 6.19209 6.44471 6.62352 6.70157 7.03501 7.05761 7.19216 8.74135 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.024873 B = 0.001686 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.447597 B =16599.067118 C =17049.962510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C 0.275 3.725 3 C 0.508 3.492 4 N -0.558 5.558 5 C 0.341 3.659 6 N -0.561 5.561 7 C 0.022 3.978 8 C 0.124 3.876 9 H 0.109 0.891 10 O -0.560 6.560 11 C 0.095 3.905 12 N -0.707 5.707 13 C 0.533 3.467 14 O -0.567 6.567 15 C -0.129 4.129 16 S -0.150 6.150 17 C -0.549 4.549 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.262 1.262 23 H -0.278 1.278 24 H -0.262 1.262 25 C -0.217 4.217 26 C 0.155 3.845 27 N -0.596 5.596 28 H 0.447 0.553 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.379 0.621 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.416 0.584 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.272 0.728 38 H 0.167 0.833 39 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.640 26.111 32.072 41.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.043 5.043 2 C -0.046 4.046 3 C 0.230 3.770 4 N -0.288 5.288 5 C 0.067 3.933 6 N -0.283 5.283 7 C -0.110 4.110 8 C 0.064 3.936 9 H 0.126 0.874 10 O -0.366 6.366 11 C -0.030 4.030 12 N -0.361 5.361 13 C 0.319 3.681 14 O -0.445 6.445 15 C -0.280 4.280 16 S 0.077 5.923 17 C -0.696 4.696 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.186 1.186 23 H -0.203 1.203 24 H -0.187 1.187 25 C -0.247 4.247 26 C 0.030 3.970 27 N -0.218 5.218 28 H 0.288 0.712 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.227 0.773 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.253 0.747 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.080 0.920 38 H 0.185 0.815 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.793 23.578 31.664 39.768 hybrid contribution 0.441 1.168 -1.013 1.608 sum 5.234 24.746 30.652 39.740 Atomic orbital electron populations 1.81430 1.11881 1.05530 1.05503 1.24368 0.90642 0.94727 0.94847 1.16484 0.84770 0.86785 0.88950 1.69175 1.12364 1.23954 1.23298 1.21680 0.84194 0.93864 0.93567 1.73423 1.33340 1.06981 1.14524 1.22389 0.98393 0.96844 0.93337 1.21947 0.99692 0.81314 0.90641 0.87372 1.86558 1.31553 1.33302 1.85157 1.22037 0.99333 1.00609 0.81030 1.45643 1.42904 1.38716 1.08850 1.20098 0.80971 0.79796 0.87218 1.90685 1.33106 1.40858 1.79889 1.23365 1.05111 1.04921 0.94627 1.85550 1.53916 1.46781 1.06047 1.23183 1.26832 1.24972 0.94639 0.89913 1.26160 0.95185 0.93818 1.04047 1.70181 1.29028 1.21510 1.34036 0.84980 0.78613 0.78608 0.75632 1.18619 1.20267 1.18662 1.22380 1.02466 0.96583 1.03285 1.22748 0.79897 0.98553 0.95840 1.42120 1.07711 1.27676 1.44278 0.71176 0.92212 0.90094 0.77329 0.91923 0.90989 0.74717 0.87324 0.87166 0.91956 0.81538 0.74316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -5.29 18.54 19.01 0.35 -4.94 16 2 C 0.27 2.57 15.62 88.33 1.38 3.95 16 3 C 0.51 3.46 7.48 135.43 1.01 4.48 16 4 N -0.56 -8.37 8.73 -186.87 -1.63 -10.00 16 5 C 0.34 5.60 7.60 136.52 1.04 6.64 16 6 N -0.56 -12.40 10.48 -341.18 -3.58 -15.97 16 7 C 0.02 0.49 6.01 86.38 0.52 1.01 16 8 C 0.12 2.73 3.27 30.59 0.10 2.83 16 9 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16 10 O -0.56 -12.67 13.15 -148.98 -1.96 -14.63 16 11 C 0.09 2.47 5.31 86.38 0.46 2.93 16 12 N -0.71 -20.70 5.50 -463.07 -2.55 -23.25 16 13 C 0.53 21.37 7.85 87.66 0.69 22.05 16 14 O -0.57 -27.92 15.86 -3.04 -0.05 -27.96 16 15 C -0.13 -5.47 6.16 71.24 0.44 -5.03 16 16 S -0.15 -8.66 20.57 -56.49 -1.16 -9.83 16 17 C -0.55 -32.29 9.50 67.96 0.65 -31.64 16 18 H 0.08 4.52 7.80 -2.91 -0.02 4.50 16 19 C 0.01 0.74 5.49 84.86 0.47 1.20 16 20 N -0.91 -57.22 13.22 21.65 0.29 -56.93 16 21 Si 1.00 44.63 29.55 68.60 2.03 46.66 16 22 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 25 C -0.22 -1.35 10.30 23.78 0.24 -1.10 16 26 C 0.15 -0.63 11.28 83.19 0.94 0.30 16 27 N -0.60 1.90 5.31 -191.99 -1.02 0.88 16 28 H 0.45 -4.95 8.73 -92.70 -0.81 -5.76 16 29 H 0.06 1.36 6.70 -2.39 -0.02 1.35 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.38 7.26 9.05 -74.06 -0.67 6.59 16 32 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 34 H 0.42 10.02 8.47 -92.71 -0.79 9.24 16 35 H 0.11 4.19 8.14 -2.40 -0.02 4.17 16 36 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 37 H 0.27 15.82 8.31 -92.72 -0.77 15.05 16 38 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 39 H 0.24 -3.64 8.06 -2.91 -0.02 -3.66 16 Total: -1.00 -93.72 372.15 -2.47 -96.18 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -1.12 Total: 12.17 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 7.93 Total: 7.61 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -8.14 Total: -110.21 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -2.01 Total: -42.59 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.83 kcal Total: -93.72 -2.47 -96.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105753880.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.583 kcal (2) G-P(sol) polarization free energy of solvation -93.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds