Wall clock time and date at job start Tue Mar 31 2020 19:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39414 * 120.06359 * 13.45011 * 3 2 1 5 5 N 1.32135 * 120.04285 * 179.97438 * 4 3 2 6 6 C 1.31967 * 120.18510 * 0.02562 * 5 4 3 7 7 C 1.39567 * 120.12855 * 359.97438 * 6 5 4 8 8 N 1.38984 * 120.02515 * 180.02562 * 7 6 5 9 9 C 1.46504 * 119.99946 * 359.97438 * 8 7 6 10 10 C 1.52999 * 109.46831 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47160 * 304.99725 * 10 9 8 12 12 O 1.42895 * 109.47485 * 65.00325 * 10 9 8 13 13 C 1.53006 * 109.46626 * 185.00094 * 10 9 8 14 14 N 1.46500 * 109.46998 * 179.97438 * 13 10 9 15 15 C 1.34769 * 120.00241 * 180.02562 * 14 13 10 16 16 O 1.21282 * 119.99850 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00466 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.47555 * 179.97438 * 17 15 14 19 19 C 1.76195 * 99.99987 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99979 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99978 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99679 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00227 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47183 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47560 * 119.99883 * 23 21 19 26 26 H 1.48508 * 109.47056 * 240.00140 * 23 21 19 27 27 N 1.32400 * 119.95374 * 0.27873 * 7 6 5 28 28 H 1.07993 * 119.98050 * 359.97368 * 4 3 2 29 29 H 1.08008 * 119.93729 * 180.02562 * 6 5 4 30 30 H 0.97001 * 119.99673 * 180.02562 * 8 7 6 31 31 H 1.08993 * 109.46929 * 59.99991 * 9 8 7 32 32 H 1.09005 * 109.46586 * 300.00148 * 9 8 7 33 33 H 0.96698 * 114.00355 * 59.99419 * 12 10 9 34 34 H 1.09000 * 109.47050 * 299.99699 * 13 10 9 35 35 H 1.09001 * 109.46801 * 59.99811 * 13 10 9 36 36 H 0.97010 * 119.99910 * 359.97438 * 14 13 10 37 37 H 1.09004 * 109.46818 * 300.00196 * 17 15 14 38 38 H 1.09004 * 109.46923 * 59.99646 * 17 15 14 39 39 H 0.97009 * 119.99700 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2669 -1.1725 -0.2807 5 7 4.5883 -1.1714 -0.2810 6 6 5.2509 -0.0614 -0.0157 7 6 4.5587 1.1173 0.2663 8 7 5.2587 2.2852 0.5450 9 6 6.7237 2.2792 0.5434 10 6 7.2398 3.6800 0.8784 11 1 6.8074 4.4018 0.1855 12 8 6.8647 4.0189 2.2149 13 6 8.7646 3.7047 0.7548 14 7 9.2588 5.0462 1.0749 15 6 10.5806 5.3056 1.0316 16 8 11.3611 4.4283 0.7280 17 6 11.0889 6.6857 1.3603 18 16 12.8928 6.7150 1.2143 19 6 13.2069 8.3956 1.6399 20 1 12.3861 9.0526 1.8871 21 6 14.5094 8.8751 1.6584 22 7 15.5098 8.0742 1.3575 23 14 14.8425 10.6567 2.1102 24 1 13.5579 11.3416 2.4033 25 1 15.7164 10.7081 3.3097 26 1 15.5181 11.3370 0.9760 27 7 3.2347 1.1210 0.2731 28 1 2.7281 -2.0829 -0.4979 29 1 6.3309 -0.0649 -0.0175 30 1 4.7772 3.1041 0.7413 31 1 7.0847 1.9845 -0.4419 32 1 7.0849 1.5712 1.2894 33 1 7.2151 3.4177 2.8863 34 1 9.1970 2.9829 1.4477 35 1 9.0507 3.4462 -0.2647 36 1 8.6345 5.7480 1.3174 37 1 10.6561 7.4069 0.6670 38 1 10.8030 6.9449 2.3797 39 1 16.4200 8.4094 1.3700 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105755228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:47 Heat of formation + Delta-G solvation = 1.384732 kcal Electronic energy + Delta-G solvation = -24010.682580 eV Core-core repulsion = 20080.356847 eV Total energy + Delta-G solvation = -3930.325733 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.79215 -39.68601 -38.50018 -37.31466 -36.32113 -34.69839 -34.29343 -32.46955 -31.85833 -30.41698 -28.86571 -26.56060 -25.74181 -25.36913 -23.99638 -22.48960 -20.51895 -19.94975 -18.89875 -18.04056 -17.53733 -17.23631 -17.01300 -16.79788 -16.37240 -15.95526 -15.43192 -15.17825 -15.07408 -14.84006 -14.29918 -14.18171 -13.95881 -13.88077 -13.70046 -13.55582 -13.35418 -13.16389 -12.95436 -12.60740 -12.25083 -12.10893 -11.86782 -11.65795 -11.10170 -11.06322 -10.89709 -10.80101 -10.74630 -9.91930 -9.85078 -9.54311 -9.13146 -9.06074 -8.62481 -8.29146 -6.55224 -6.26097 -3.96993 -0.24524 0.57221 1.69460 2.26150 2.29382 2.84440 2.96288 2.97344 3.18807 3.23757 3.24438 3.28825 3.53462 3.65147 3.72335 3.78820 4.04740 4.16022 4.17216 4.27482 4.35749 4.42090 4.66291 4.79834 4.86126 5.06394 5.09565 5.35426 5.41394 5.45997 5.64124 5.82432 5.88729 6.08213 6.41652 6.59332 6.66995 6.84026 6.99913 7.17085 7.55368 7.57157 8.31355 8.47958 9.19726 10.81385 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.041859 B = 0.001464 C = 0.001424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.748088 B =19126.671842 C =19663.745908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C 0.267 3.733 3 C 0.199 3.801 4 C 0.033 3.967 5 N -0.394 5.394 6 C 0.024 3.976 7 C 0.369 3.631 8 N -0.702 5.702 9 C 0.090 3.910 10 C 0.087 3.913 11 H 0.116 0.884 12 O -0.552 6.552 13 C 0.093 3.907 14 N -0.734 5.734 15 C 0.533 3.467 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 N -0.477 5.477 28 H 0.178 0.822 29 H 0.176 0.824 30 H 0.415 0.585 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.382 0.618 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.404 0.596 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.125 -15.798 -1.865 28.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.052 5.052 2 C -0.051 4.051 3 C 0.057 3.943 4 C -0.129 4.129 5 N -0.106 5.106 6 C -0.148 4.148 7 C 0.127 3.873 8 N -0.336 5.336 9 C -0.035 4.035 10 C 0.027 3.973 11 H 0.134 0.866 12 O -0.358 6.358 13 C -0.033 4.033 14 N -0.390 5.390 15 C 0.319 3.681 16 O -0.392 6.392 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.092 0.908 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 N -0.202 5.202 28 H 0.195 0.805 29 H 0.193 0.807 30 H 0.253 0.747 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.231 0.769 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.238 0.762 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.468 -16.831 -2.696 29.005 hybrid contribution -0.427 2.462 1.080 2.722 sum -23.895 -14.368 -1.617 27.929 Atomic orbital electron populations 1.81298 1.11305 1.06260 1.06383 1.24752 0.91345 0.94279 0.94731 1.16982 0.86768 0.90956 0.99578 1.23366 0.90478 0.97942 1.01151 1.68404 1.07860 1.27036 1.07319 1.23512 1.01961 0.87632 1.01671 1.19188 0.87971 0.88612 0.91576 1.44389 1.05395 1.09154 1.74617 1.22228 0.78897 0.98877 1.03479 1.22353 0.93844 0.95254 0.85822 0.86613 1.86632 1.76891 1.57038 1.15250 1.21802 0.92229 0.86498 1.02747 1.45833 1.07950 1.12208 1.72975 1.20341 0.81261 0.90303 0.76171 1.90711 1.55242 1.47309 1.45902 1.23528 1.06866 0.95419 1.04592 1.85384 0.91977 1.15588 1.90456 1.22907 0.95505 0.95953 1.54043 0.90835 1.24990 0.95050 0.98786 0.94714 1.70028 0.99441 1.35392 1.45410 0.86114 0.78436 0.82684 0.78246 1.19602 1.20543 1.20549 1.67733 1.07195 1.27943 1.17306 0.80533 0.80713 0.74692 0.89536 0.90170 0.76930 0.90808 0.90227 0.76170 0.89157 0.89111 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -3.65 18.54 41.84 0.78 -2.88 16 2 C 0.27 2.07 15.56 -22.47 -0.35 1.72 16 3 C 0.20 1.32 6.58 -84.91 -0.56 0.76 16 4 C 0.03 0.17 10.92 -16.98 -0.19 -0.01 16 5 N -0.39 -2.46 10.48 -12.53 -0.13 -2.59 16 6 C 0.02 0.12 10.49 -17.00 -0.18 -0.06 16 7 C 0.37 2.13 7.66 -154.87 -1.19 0.95 16 8 N -0.70 -2.89 5.67 -60.30 -0.34 -3.23 16 9 C 0.09 0.22 4.54 -4.04 -0.02 0.20 16 10 C 0.09 0.35 3.09 -26.73 -0.08 0.27 16 11 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 12 O -0.55 -2.77 13.03 -35.23 -0.46 -3.23 16 13 C 0.09 0.68 5.34 -4.04 -0.02 0.66 16 14 N -0.73 -7.90 5.45 -60.29 -0.33 -8.23 16 15 C 0.53 8.92 7.85 -10.99 -0.09 8.84 16 16 O -0.52 -10.72 15.86 5.56 0.09 -10.63 16 17 C -0.15 -2.90 6.16 36.01 0.22 -2.68 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 19 C -0.54 -14.90 9.50 30.94 0.29 -14.61 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.64 13.22 55.49 0.73 -24.91 16 23 Si 0.92 20.99 29.55 -169.99 -5.02 15.96 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 N -0.48 -3.58 10.46 -10.15 -0.11 -3.69 16 28 H 0.18 0.45 8.06 -52.49 -0.42 0.03 16 29 H 0.18 0.45 6.71 -52.48 -0.35 0.09 16 30 H 0.42 1.91 8.60 -40.82 -0.35 1.56 16 31 H 0.09 0.13 7.94 -51.93 -0.41 -0.28 16 32 H 0.08 0.11 7.94 -51.93 -0.41 -0.31 16 33 H 0.38 1.05 9.05 45.56 0.41 1.46 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.40 3.56 8.35 -40.82 -0.34 3.22 16 37 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 38 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -36.83 370.79 -7.20 -44.03 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -3.54 Total: -0.39 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.25 Total: -2.00 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.60 Total: -45.53 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.37 Total: -13.87 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.83 -7.20 -44.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105755228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.418 kcal (2) G-P(sol) polarization free energy of solvation -36.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds