Wall clock time and date at job start Tue Mar 31 2020 19:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39414 * 120.06359 * 13.45011 * 3 2 1 5 5 N 1.32135 * 120.04285 * 179.97438 * 4 3 2 6 6 C 1.31967 * 120.18510 * 0.02562 * 5 4 3 7 7 C 1.39567 * 120.12855 * 359.97438 * 6 5 4 8 8 N 1.38984 * 120.02515 * 180.02562 * 7 6 5 9 9 C 1.46504 * 119.99946 * 359.97438 * 8 7 6 10 10 C 1.52999 * 109.46831 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47160 * 304.99725 * 10 9 8 12 12 O 1.42895 * 109.47485 * 65.00325 * 10 9 8 13 13 C 1.53006 * 109.46626 * 185.00094 * 10 9 8 14 14 N 1.46500 * 109.46998 * 179.97438 * 13 10 9 15 15 C 1.34769 * 120.00241 * 180.02562 * 14 13 10 16 16 O 1.21282 * 119.99850 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00466 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.47555 * 179.97438 * 17 15 14 19 19 C 1.76195 * 99.99987 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99979 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99978 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99679 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00227 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47183 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47560 * 119.99883 * 23 21 19 26 26 H 1.48508 * 109.47056 * 240.00140 * 23 21 19 27 27 N 1.32400 * 119.95374 * 0.27873 * 7 6 5 28 28 H 1.07993 * 119.98050 * 359.97368 * 4 3 2 29 29 H 1.08008 * 119.93729 * 180.02562 * 6 5 4 30 30 H 0.97001 * 119.99673 * 180.02562 * 8 7 6 31 31 H 1.08993 * 109.46929 * 59.99991 * 9 8 7 32 32 H 1.09005 * 109.46586 * 300.00148 * 9 8 7 33 33 H 0.96698 * 114.00355 * 59.99419 * 12 10 9 34 34 H 1.09000 * 109.47050 * 299.99699 * 13 10 9 35 35 H 1.09001 * 109.46801 * 59.99811 * 13 10 9 36 36 H 0.97010 * 119.99910 * 359.97438 * 14 13 10 37 37 H 1.09004 * 109.46818 * 300.00196 * 17 15 14 38 38 H 1.09004 * 109.46923 * 59.99646 * 17 15 14 39 39 H 0.97009 * 119.99700 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2669 -1.1725 -0.2807 5 7 4.5883 -1.1714 -0.2810 6 6 5.2509 -0.0614 -0.0157 7 6 4.5587 1.1173 0.2663 8 7 5.2587 2.2852 0.5450 9 6 6.7237 2.2792 0.5434 10 6 7.2398 3.6800 0.8784 11 1 6.8074 4.4018 0.1855 12 8 6.8647 4.0189 2.2149 13 6 8.7646 3.7047 0.7548 14 7 9.2588 5.0462 1.0749 15 6 10.5806 5.3056 1.0316 16 8 11.3611 4.4283 0.7280 17 6 11.0889 6.6857 1.3603 18 16 12.8928 6.7150 1.2143 19 6 13.2069 8.3956 1.6399 20 1 12.3861 9.0526 1.8871 21 6 14.5094 8.8751 1.6584 22 7 15.5098 8.0742 1.3575 23 14 14.8425 10.6567 2.1102 24 1 13.5579 11.3416 2.4033 25 1 15.7164 10.7081 3.3097 26 1 15.5181 11.3370 0.9760 27 7 3.2347 1.1210 0.2731 28 1 2.7281 -2.0829 -0.4979 29 1 6.3309 -0.0649 -0.0175 30 1 4.7772 3.1041 0.7413 31 1 7.0847 1.9845 -0.4419 32 1 7.0849 1.5712 1.2894 33 1 7.2151 3.4177 2.8863 34 1 9.1970 2.9829 1.4477 35 1 9.0507 3.4462 -0.2647 36 1 8.6345 5.7480 1.3174 37 1 10.6561 7.4069 0.6670 38 1 10.8030 6.9449 2.3797 39 1 16.4200 8.4094 1.3700 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105755228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:46 Heat of formation + Delta-G solvation = -30.202606 kcal Electronic energy + Delta-G solvation = -24012.052309 eV Core-core repulsion = 20080.356847 eV Total energy + Delta-G solvation = -3931.695463 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.20448 -40.69639 -39.16242 -37.93468 -36.74623 -35.26794 -35.12120 -34.57136 -32.37755 -31.36703 -29.74941 -27.68414 -27.00247 -26.14983 -24.41931 -22.91316 -21.71153 -20.43411 -19.85459 -19.30952 -18.07760 -17.89260 -17.64780 -17.42101 -17.15836 -16.87082 -16.52224 -16.45111 -16.15501 -15.67395 -15.41539 -14.90482 -14.75050 -14.59939 -14.36887 -14.32243 -14.28080 -14.10491 -13.80284 -13.69777 -13.14475 -13.10603 -12.89817 -12.69476 -12.59367 -12.50795 -12.02454 -11.71322 -11.30055 -11.17346 -11.14832 -10.89376 -10.34188 -10.25611 -10.08592 -8.95794 -8.64424 -8.34069 -6.11228 -0.68901 0.16517 1.16781 1.29265 1.41980 1.48450 1.59029 1.65013 1.72459 1.86603 2.26935 2.31150 2.46551 2.78902 3.00504 3.25812 3.33226 3.35479 3.46923 3.64662 3.73537 3.86809 4.00590 4.05197 4.11003 4.32541 4.37401 4.49695 4.55149 4.64230 4.78818 5.03315 5.09859 5.43315 5.44217 5.56104 6.10394 6.21065 6.25263 6.42596 6.51846 6.74108 6.80699 7.08039 7.27724 8.75249 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.041859 B = 0.001464 C = 0.001424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.748088 B =19126.671842 C =19663.745908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.290 3.710 3 C 0.184 3.816 4 C 0.042 3.958 5 N -0.413 5.413 6 C 0.034 3.966 7 C 0.364 3.636 8 N -0.697 5.697 9 C 0.092 3.908 10 C 0.105 3.895 11 H 0.120 0.880 12 O -0.565 6.565 13 C 0.088 3.912 14 N -0.708 5.708 15 C 0.535 3.465 16 O -0.564 6.564 17 C -0.132 4.132 18 S -0.149 6.149 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.015 3.985 22 N -0.910 5.910 23 Si 0.996 3.004 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.274 1.274 27 N -0.503 5.503 28 H 0.200 0.800 29 H 0.202 0.798 30 H 0.413 0.587 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.392 0.608 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.416 0.584 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.145 -15.363 -1.533 28.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.028 4.028 3 C 0.043 3.957 4 C -0.120 4.120 5 N -0.125 5.125 6 C -0.138 4.138 7 C 0.121 3.879 8 N -0.330 5.330 9 C -0.033 4.033 10 C 0.045 3.955 11 H 0.138 0.862 12 O -0.372 6.372 13 C -0.036 4.036 14 N -0.362 5.362 15 C 0.321 3.679 16 O -0.442 6.442 17 C -0.284 4.284 18 S 0.078 5.922 19 C -0.695 4.695 20 H 0.100 0.900 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.181 1.181 25 H -0.200 1.200 26 H -0.200 1.200 27 N -0.229 5.229 28 H 0.217 0.783 29 H 0.219 0.781 30 H 0.250 0.750 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.243 0.757 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.254 0.746 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.564 -16.406 -2.354 29.633 hybrid contribution -0.156 2.275 0.984 2.484 sum -24.720 -14.131 -1.370 28.507 Atomic orbital electron populations 1.81307 1.12442 1.07648 1.08131 1.24915 0.91485 0.93004 0.93394 1.16966 0.86046 0.91510 1.01149 1.23683 0.90363 0.98187 0.99764 1.68491 1.08158 1.27608 1.08198 1.23949 1.03090 0.86931 0.99787 1.19323 0.87520 0.89339 0.91755 1.44416 1.05865 1.08583 1.74125 1.22295 0.77901 0.98096 1.04985 1.22160 0.91184 0.96493 0.85706 0.86212 1.86622 1.76970 1.57828 1.15830 1.22065 0.94504 0.84219 1.02847 1.45576 1.05857 1.14180 1.70621 1.19944 0.82915 0.88810 0.76260 1.90700 1.56875 1.48143 1.48521 1.23388 1.00934 0.97870 1.06163 1.85512 0.99615 1.16218 1.90868 1.23246 0.96145 0.96235 1.53851 0.90022 1.26081 0.94745 1.03774 0.94371 1.70183 0.99984 1.37813 1.46724 0.84937 0.78736 0.76487 0.77988 1.18124 1.19971 1.19988 1.67643 1.08300 1.28616 1.18312 0.78303 0.78146 0.74957 0.87993 0.88388 0.75730 0.90519 0.90148 0.74650 0.87424 0.87446 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -8.28 18.54 19.00 0.35 -7.93 16 2 C 0.29 4.47 15.56 88.33 1.37 5.84 16 3 C 0.18 2.29 6.58 40.46 0.27 2.56 16 4 C 0.04 0.38 10.92 84.93 0.93 1.30 16 5 N -0.41 -4.28 10.48 -193.55 -2.03 -6.31 16 6 C 0.03 0.26 10.49 84.99 0.89 1.15 16 7 C 0.36 3.46 7.66 133.17 1.02 4.48 16 8 N -0.70 -3.94 5.67 -344.70 -1.96 -5.89 16 9 C 0.09 0.14 4.54 86.38 0.39 0.53 16 10 C 0.10 0.51 3.09 30.60 0.09 0.60 16 11 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 12 O -0.56 -3.99 13.03 -148.98 -1.94 -5.93 16 13 C 0.09 1.06 5.34 86.38 0.46 1.52 16 14 N -0.71 -13.58 5.45 -463.05 -2.52 -16.11 16 15 C 0.54 17.34 7.85 87.66 0.69 18.03 16 16 O -0.56 -23.42 15.86 -3.04 -0.05 -23.47 16 17 C -0.13 -4.88 6.16 71.24 0.44 -4.45 16 18 S -0.15 -7.99 20.57 -56.49 -1.16 -9.15 16 19 C -0.55 -30.51 9.50 67.95 0.65 -29.87 16 20 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 21 C 0.02 0.85 5.49 84.86 0.47 1.31 16 22 N -0.91 -54.84 13.22 21.65 0.29 -54.55 16 23 Si 1.00 42.75 29.55 68.60 2.03 44.77 16 24 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 N -0.50 -7.02 10.46 -186.04 -1.95 -8.96 16 28 H 0.20 0.68 8.06 -2.91 -0.02 0.66 16 29 H 0.20 0.28 6.71 -2.91 -0.02 0.26 16 30 H 0.41 2.90 8.60 -92.71 -0.80 2.10 16 31 H 0.10 -0.08 7.94 -2.39 -0.02 -0.10 16 32 H 0.10 -0.13 7.94 -2.38 -0.02 -0.15 16 33 H 0.39 0.99 9.05 -74.06 -0.67 0.32 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.42 6.08 8.35 -92.70 -0.77 5.30 16 37 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 38 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 39 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -82.66 370.79 -2.36 -85.03 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -1.09 Total: 5.49 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 7.67 Total: 3.01 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -7.81 Total: -99.75 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -1.99 Total: -29.40 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.15 kcal Total: -82.66 -2.36 -85.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105755228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.825 kcal (2) G-P(sol) polarization free energy of solvation -82.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds