Wall clock time and date at job start Tue Mar 31 2020 19:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39558 * 120.01932 * 152.03356 * 3 2 1 5 5 N 1.32003 * 119.96617 * 179.97438 * 4 3 2 6 6 C 1.32791 * 120.00409 * 0.02562 * 5 4 3 7 7 N 1.38575 * 119.97770 * 179.97438 * 6 5 4 8 8 C 1.46494 * 119.99696 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47001 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.47617 * 59.99687 * 9 8 7 11 11 O 1.42903 * 109.46998 * 299.99996 * 9 8 7 12 12 C 1.52997 * 109.47535 * 180.02562 * 9 8 7 13 13 N 1.46502 * 109.47595 * 184.99776 * 12 9 8 14 14 C 1.34768 * 120.00299 * 179.97438 * 13 12 9 15 15 O 1.21289 * 120.00127 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00360 * 179.97438 * 14 13 12 17 17 S 1.80996 * 109.47322 * 180.02562 * 16 14 13 18 18 C 1.76203 * 99.99901 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00255 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99836 * 179.97438 * 18 17 16 21 21 N 1.31623 * 120.00261 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99856 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46972 * 60.00425 * 22 20 18 24 24 H 1.48496 * 109.47295 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47484 * 300.00336 * 22 20 18 26 26 C 1.39708 * 120.04316 * 0.26972 * 6 5 4 27 27 N 1.31574 * 120.03340 * 359.43347 * 26 6 5 28 28 H 1.08003 * 120.01941 * 359.95305 * 4 3 2 29 29 H 0.97004 * 119.99666 * 359.72383 * 7 6 5 30 30 H 1.09003 * 109.47636 * 299.99597 * 8 7 6 31 31 H 1.08993 * 109.47668 * 59.99974 * 8 7 6 32 32 H 0.96700 * 113.99624 * 299.99965 * 11 9 8 33 33 H 1.09002 * 109.46798 * 304.99621 * 12 9 8 34 34 H 1.08998 * 109.47296 * 64.99355 * 12 9 8 35 35 H 0.97003 * 119.99131 * 359.97438 * 13 12 9 36 36 H 1.09002 * 109.47040 * 300.00309 * 16 14 13 37 37 H 1.08998 * 109.46962 * 59.99987 * 16 14 13 38 38 H 0.97000 * 120.00376 * 179.97438 * 21 20 18 39 39 H 1.07997 * 119.98353 * 179.71337 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2657 1.0682 -0.5667 5 7 4.5857 1.0680 -0.5656 6 6 5.2492 0.0521 -0.0261 7 7 6.6349 0.0521 -0.0258 8 6 7.3672 -1.0682 0.5698 9 6 8.8715 -0.8210 0.4396 10 1 9.1345 0.1014 0.9575 11 8 9.2175 -0.7066 -0.9422 12 6 9.6365 -1.9912 1.0610 13 7 11.0722 -1.7005 1.0438 14 6 11.9471 -2.5953 1.5440 15 8 11.5458 -3.6415 2.0081 16 6 13.4240 -2.2964 1.5258 17 16 14.3288 -3.6808 2.2611 18 6 15.9788 -3.0802 2.1145 19 1 16.1642 -2.1137 1.6696 20 6 17.0404 -3.8493 2.5708 21 7 16.8146 -5.0274 3.1125 22 14 18.7897 -3.2129 2.4148 23 1 18.9215 -1.9382 3.1653 24 1 19.7328 -4.2156 2.9718 25 1 19.1056 -2.9790 0.9827 26 6 4.5510 -1.0197 0.5358 27 7 3.2353 -1.0184 0.5408 28 1 2.7260 1.8940 -1.0062 29 1 7.1199 0.7922 -0.4232 30 1 7.1038 -1.1552 1.6240 31 1 7.1041 -1.9906 0.0523 32 1 9.0111 -1.4930 -1.4657 33 1 9.3072 -2.1349 2.0901 34 1 9.4424 -2.8976 0.4876 35 1 11.3931 -0.8638 0.6723 36 1 13.7531 -2.1535 0.4965 37 1 13.6183 -1.3897 2.0986 38 1 17.5565 -5.5651 3.4311 39 1 5.0915 -1.8476 0.9702 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105755662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:51 Heat of formation + Delta-G solvation = -0.947891 kcal Electronic energy + Delta-G solvation = -23962.610738 eV Core-core repulsion = 20032.183854 eV Total energy + Delta-G solvation = -3930.426883 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.77988 -39.71389 -38.56065 -37.23912 -36.17688 -34.76227 -34.33942 -32.47420 -31.84149 -30.53132 -29.00430 -26.29195 -25.58126 -25.45814 -24.07498 -22.49132 -20.50471 -20.16415 -18.88256 -18.30198 -17.86226 -17.22579 -16.95387 -16.43389 -15.92449 -15.79118 -15.54718 -15.21015 -15.10214 -14.84308 -14.65711 -14.29808 -14.07504 -13.89310 -13.47164 -13.45510 -13.29401 -13.18436 -12.95259 -12.61169 -12.24540 -12.02413 -11.87610 -11.71177 -11.09439 -11.07229 -10.97967 -10.88210 -10.77702 -9.87981 -9.87205 -9.55692 -9.13222 -9.06991 -8.64337 -8.30677 -6.55879 -6.26059 -3.97393 -0.04629 0.46324 2.04972 2.05406 2.35242 2.89630 2.95785 3.04496 3.20450 3.23497 3.26438 3.30030 3.52380 3.67173 3.70329 3.78176 3.97234 4.06264 4.16146 4.20942 4.33530 4.43491 4.73577 4.80583 4.82624 5.04595 5.09333 5.29961 5.33245 5.43008 5.62964 5.81220 5.86433 6.06968 6.39613 6.55997 6.67105 6.95675 6.97943 7.16099 7.53406 7.55538 8.30493 8.46254 9.19337 10.81304 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.047912 B = 0.001430 C = 0.001398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.268933 B =19573.071423 C =20028.911880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C 0.278 3.722 3 C 0.054 3.946 4 C 0.172 3.828 5 N -0.503 5.503 6 C 0.384 3.616 7 N -0.691 5.691 8 C 0.085 3.915 9 C 0.087 3.913 10 H 0.117 0.883 11 O -0.552 6.552 12 C 0.093 3.907 13 N -0.734 5.734 14 C 0.533 3.467 15 O -0.517 6.517 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.538 4.538 19 H 0.072 0.928 20 C 0.075 3.925 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.004 3.996 27 N -0.366 5.366 28 H 0.180 0.820 29 H 0.418 0.582 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.383 0.617 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.403 0.597 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.269 0.731 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.756 13.196 -8.360 27.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.075 5.075 2 C -0.039 4.039 3 C -0.087 4.087 4 C 0.007 3.993 5 N -0.225 5.225 6 C 0.141 3.859 7 N -0.321 5.321 8 C -0.040 4.040 9 C 0.027 3.973 10 H 0.135 0.865 11 O -0.358 6.358 12 C -0.033 4.033 13 N -0.390 5.390 14 C 0.319 3.681 15 O -0.391 6.391 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.686 4.686 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.170 4.170 27 N -0.080 5.080 28 H 0.197 0.803 29 H 0.256 0.744 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.231 0.769 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.238 0.762 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -24.773 11.692 -7.211 28.327 hybrid contribution 2.205 1.677 -1.045 2.961 sum -22.568 13.369 -8.256 27.499 Atomic orbital electron populations 1.81289 1.11396 1.06822 1.08022 1.24635 0.91215 0.94134 0.93957 1.16920 0.87190 0.96160 1.08426 1.23451 0.88890 0.96040 0.90924 1.68135 1.08374 1.25315 1.20635 1.19625 0.86691 0.90424 0.89162 1.44424 1.01133 1.24864 1.61661 1.22297 0.92240 0.89421 1.00066 1.22364 0.90791 1.00333 0.83790 0.86535 1.86634 1.86301 1.44088 1.18811 1.21807 0.81988 0.97169 1.02294 1.45840 1.05438 1.22703 1.65008 1.20346 0.87992 0.83203 0.76532 1.90715 1.79696 1.24644 1.44061 1.23528 0.93837 1.07318 1.05745 1.85387 1.00640 1.19323 1.77974 1.22826 0.91589 1.07022 1.47141 0.90938 1.24982 0.99447 0.94602 0.94431 1.69997 1.32524 1.10224 1.37527 0.86227 0.82056 0.78604 0.78636 1.19917 1.20783 1.19915 1.23190 0.89531 0.99709 1.04529 1.68098 1.08351 1.22576 1.08971 0.80284 0.74432 0.89249 0.89895 0.76892 0.90211 0.90763 0.76237 0.89104 0.89151 0.92081 0.80588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.10 18.54 41.84 0.78 -3.32 16 2 C 0.28 2.27 15.56 -22.47 -0.35 1.92 16 3 C 0.05 0.36 6.59 -84.82 -0.56 -0.20 16 4 C 0.17 0.86 10.92 -16.99 -0.19 0.68 16 5 N -0.50 -3.06 10.52 -11.92 -0.13 -3.18 16 6 C 0.38 2.00 7.66 -154.89 -1.19 0.81 16 7 N -0.69 -2.36 5.60 -60.29 -0.34 -2.69 16 8 C 0.08 0.17 4.56 -4.04 -0.02 0.15 16 9 C 0.09 0.31 3.09 -26.73 -0.08 0.23 16 10 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 11 O -0.55 -2.49 13.02 -35.23 -0.46 -2.95 16 12 C 0.09 0.65 5.31 -4.04 -0.02 0.63 16 13 N -0.73 -7.72 5.50 -60.30 -0.33 -8.05 16 14 C 0.53 8.83 7.85 -10.99 -0.09 8.75 16 15 O -0.52 -10.66 15.86 5.55 0.09 -10.57 16 16 C -0.15 -2.88 6.16 36.00 0.22 -2.66 16 17 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 18 C -0.54 -14.89 9.50 30.94 0.29 -14.60 16 19 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -25.59 13.22 55.49 0.73 -24.85 16 22 Si 0.92 20.88 29.55 -169.99 -5.02 15.86 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 C 0.00 0.02 10.48 -17.11 -0.18 -0.16 16 27 N -0.37 -2.72 10.41 -10.72 -0.11 -2.83 16 28 H 0.18 0.36 8.06 -52.48 -0.42 -0.07 16 29 H 0.42 1.55 8.47 -40.82 -0.35 1.20 16 30 H 0.09 0.11 7.94 -51.93 -0.41 -0.30 16 31 H 0.08 0.08 7.92 -51.93 -0.41 -0.33 16 32 H 0.38 0.88 9.04 45.56 0.41 1.29 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.40 3.40 8.47 -40.82 -0.35 3.05 16 36 H 0.09 1.58 8.14 -51.91 -0.42 1.15 16 37 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.18 0.49 6.70 -52.49 -0.35 0.14 16 LS Contribution 370.72 15.07 5.59 5.59 Total: -1.00 -37.20 370.72 -7.20 -44.40 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -3.54 Total: -1.16 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -2.25 Total: -2.45 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.60 Total: -44.93 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.37 Total: -13.52 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.20 -7.20 -44.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105755662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.449 kcal (2) G-P(sol) polarization free energy of solvation -37.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds