Wall clock time and date at job start Tue Mar 31 2020 19:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39558 * 120.01932 * 152.03356 * 3 2 1 5 5 N 1.32003 * 119.96617 * 179.97438 * 4 3 2 6 6 C 1.32791 * 120.00409 * 0.02562 * 5 4 3 7 7 N 1.38575 * 119.97770 * 179.97438 * 6 5 4 8 8 C 1.46494 * 119.99696 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47001 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.47617 * 59.99687 * 9 8 7 11 11 O 1.42903 * 109.46998 * 299.99996 * 9 8 7 12 12 C 1.52997 * 109.47535 * 180.02562 * 9 8 7 13 13 N 1.46502 * 109.47595 * 184.99776 * 12 9 8 14 14 C 1.34768 * 120.00299 * 179.97438 * 13 12 9 15 15 O 1.21289 * 120.00127 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00360 * 179.97438 * 14 13 12 17 17 S 1.80996 * 109.47322 * 180.02562 * 16 14 13 18 18 C 1.76203 * 99.99901 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00255 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99836 * 179.97438 * 18 17 16 21 21 N 1.31623 * 120.00261 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99856 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46972 * 60.00425 * 22 20 18 24 24 H 1.48496 * 109.47295 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47484 * 300.00336 * 22 20 18 26 26 C 1.39708 * 120.04316 * 0.26972 * 6 5 4 27 27 N 1.31574 * 120.03340 * 359.43347 * 26 6 5 28 28 H 1.08003 * 120.01941 * 359.95305 * 4 3 2 29 29 H 0.97004 * 119.99666 * 359.72383 * 7 6 5 30 30 H 1.09003 * 109.47636 * 299.99597 * 8 7 6 31 31 H 1.08993 * 109.47668 * 59.99974 * 8 7 6 32 32 H 0.96700 * 113.99624 * 299.99965 * 11 9 8 33 33 H 1.09002 * 109.46798 * 304.99621 * 12 9 8 34 34 H 1.08998 * 109.47296 * 64.99355 * 12 9 8 35 35 H 0.97003 * 119.99131 * 359.97438 * 13 12 9 36 36 H 1.09002 * 109.47040 * 300.00309 * 16 14 13 37 37 H 1.08998 * 109.46962 * 59.99987 * 16 14 13 38 38 H 0.97000 * 120.00376 * 179.97438 * 21 20 18 39 39 H 1.07997 * 119.98353 * 179.71337 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2657 1.0682 -0.5667 5 7 4.5857 1.0680 -0.5656 6 6 5.2492 0.0521 -0.0261 7 7 6.6349 0.0521 -0.0258 8 6 7.3672 -1.0682 0.5698 9 6 8.8715 -0.8210 0.4396 10 1 9.1345 0.1014 0.9575 11 8 9.2175 -0.7066 -0.9422 12 6 9.6365 -1.9912 1.0610 13 7 11.0722 -1.7005 1.0438 14 6 11.9471 -2.5953 1.5440 15 8 11.5458 -3.6415 2.0081 16 6 13.4240 -2.2964 1.5258 17 16 14.3288 -3.6808 2.2611 18 6 15.9788 -3.0802 2.1145 19 1 16.1642 -2.1137 1.6696 20 6 17.0404 -3.8493 2.5708 21 7 16.8146 -5.0274 3.1125 22 14 18.7897 -3.2129 2.4148 23 1 18.9215 -1.9382 3.1653 24 1 19.7328 -4.2156 2.9718 25 1 19.1056 -2.9790 0.9827 26 6 4.5510 -1.0197 0.5358 27 7 3.2353 -1.0184 0.5408 28 1 2.7260 1.8940 -1.0062 29 1 7.1199 0.7922 -0.4232 30 1 7.1038 -1.1552 1.6240 31 1 7.1041 -1.9906 0.0523 32 1 9.0111 -1.4930 -1.4657 33 1 9.3072 -2.1349 2.0901 34 1 9.4424 -2.8976 0.4876 35 1 11.3931 -0.8638 0.6723 36 1 13.7531 -2.1535 0.4965 37 1 13.6183 -1.3897 2.0986 38 1 17.5565 -5.5651 3.4311 39 1 5.0915 -1.8476 0.9702 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105755662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:50 Heat of formation + Delta-G solvation = -32.987299 kcal Electronic energy + Delta-G solvation = -23964.000070 eV Core-core repulsion = 20032.183854 eV Total energy + Delta-G solvation = -3931.816216 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.17492 -40.69761 -39.20650 -37.84381 -36.64878 -35.28953 -35.14360 -34.56720 -32.34619 -31.42269 -29.90951 -27.68755 -26.77268 -25.96752 -24.54152 -22.87089 -21.68962 -20.64789 -19.85534 -19.26491 -18.60201 -17.85721 -17.66299 -17.35932 -16.86185 -16.54525 -16.48312 -16.13915 -16.11302 -15.64395 -15.59523 -15.06255 -14.86521 -14.69550 -14.35661 -14.34109 -14.08951 -14.06043 -13.86430 -13.64497 -13.15130 -13.09414 -12.84746 -12.67768 -12.61866 -12.46878 -12.04250 -11.74515 -11.33746 -11.22608 -11.11407 -10.88899 -10.28179 -10.25881 -10.09030 -8.98352 -8.64257 -8.33158 -6.10764 -0.46976 0.07188 1.28519 1.44999 1.45595 1.47906 1.56630 1.64963 1.74419 1.81530 2.28407 2.35614 2.55622 2.84218 3.01219 3.28199 3.33662 3.39281 3.48850 3.58701 3.67283 3.80179 4.03287 4.04430 4.10498 4.32845 4.47716 4.51741 4.55421 4.61485 4.77929 4.96731 5.04558 5.43105 5.44116 5.56102 6.16898 6.21011 6.28877 6.44313 6.51745 6.73582 6.80907 7.08545 7.27764 8.75630 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.047912 B = 0.001430 C = 0.001398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.268933 B =19573.071423 C =20028.911880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.301 3.699 3 C 0.032 3.968 4 C 0.185 3.815 5 N -0.521 5.521 6 C 0.386 3.614 7 N -0.679 5.679 8 C 0.085 3.915 9 C 0.105 3.895 10 H 0.124 0.876 11 O -0.564 6.564 12 C 0.087 3.913 13 N -0.708 5.708 14 C 0.535 3.465 15 O -0.565 6.565 16 C -0.132 4.132 17 S -0.150 6.150 18 C -0.549 4.549 19 H 0.082 0.918 20 C 0.016 3.984 21 N -0.911 5.911 22 Si 0.996 3.004 23 H -0.262 1.262 24 H -0.280 1.280 25 H -0.262 1.262 26 C 0.007 3.993 27 N -0.392 5.392 28 H 0.206 0.794 29 H 0.418 0.582 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.393 0.607 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.417 0.583 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.271 0.729 39 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.111 15.255 -9.361 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.016 4.016 3 C -0.107 4.107 4 C 0.020 3.980 5 N -0.244 5.244 6 C 0.142 3.858 7 N -0.308 5.308 8 C -0.040 4.040 9 C 0.045 3.955 10 H 0.141 0.859 11 O -0.372 6.372 12 C -0.037 4.037 13 N -0.362 5.362 14 C 0.320 3.680 15 O -0.443 6.443 16 C -0.283 4.283 17 S 0.077 5.923 18 C -0.696 4.696 19 H 0.100 0.900 20 C -0.189 4.189 21 N -0.547 5.547 22 Si 0.817 3.183 23 H -0.187 1.187 24 H -0.205 1.205 25 H -0.187 1.187 26 C -0.168 4.168 27 N -0.106 5.106 28 H 0.223 0.777 29 H 0.257 0.743 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.243 0.757 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.254 0.746 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -24.158 13.807 -8.249 29.022 hybrid contribution 2.007 1.091 -0.784 2.415 sum -22.151 14.898 -9.034 28.182 Atomic orbital electron populations 1.81296 1.12660 1.08428 1.09932 1.24861 0.91441 0.92752 0.92539 1.16907 0.86340 0.97194 1.10305 1.23784 0.88656 0.95912 0.89612 1.68211 1.08688 1.25890 1.21584 1.19759 0.87236 0.90213 0.88613 1.44459 1.00518 1.25036 1.60799 1.22376 0.90869 0.89515 1.01218 1.22166 0.91162 0.98882 0.83252 0.85859 1.86624 1.86504 1.44925 1.19101 1.22077 0.79760 0.98936 1.02932 1.45576 1.06400 1.21700 1.62539 1.19958 0.87682 0.83440 0.76880 1.90704 1.80114 1.26803 1.46685 1.23386 0.94722 1.04207 1.06026 1.85527 1.02379 1.24777 1.79635 1.23187 0.92055 1.07393 1.47010 0.89959 1.26080 1.04381 0.94674 0.93785 1.70164 1.33942 1.11812 1.38799 0.85045 0.75861 0.78191 0.79166 1.18680 1.20485 1.18709 1.23544 0.88892 1.00283 1.04101 1.68035 1.09505 1.23275 1.09785 0.77750 0.74347 0.87742 0.88234 0.75711 0.90112 0.90705 0.74614 0.87415 0.87325 0.92011 0.78315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.42 18.54 19.00 0.35 -9.07 16 2 C 0.30 4.95 15.56 88.33 1.37 6.32 16 3 C 0.03 0.41 6.59 40.49 0.27 0.67 16 4 C 0.18 1.58 10.92 84.99 0.93 2.51 16 5 N -0.52 -5.28 10.52 -191.64 -2.02 -7.30 16 6 C 0.39 3.06 7.66 133.23 1.02 4.08 16 7 N -0.68 -2.49 5.60 -344.66 -1.93 -4.42 16 8 C 0.08 0.04 4.56 86.38 0.39 0.43 16 9 C 0.11 0.38 3.09 30.59 0.09 0.48 16 10 H 0.12 0.37 8.14 -2.38 -0.02 0.35 16 11 O -0.56 -3.18 13.02 -148.98 -1.94 -5.12 16 12 C 0.09 0.99 5.31 86.38 0.46 1.45 16 13 N -0.71 -13.08 5.50 -463.07 -2.55 -15.63 16 14 C 0.53 17.10 7.85 87.66 0.69 17.79 16 15 O -0.56 -23.34 15.86 -3.06 -0.05 -23.39 16 16 C -0.13 -4.82 6.16 71.24 0.44 -4.38 16 17 S -0.15 -8.01 20.57 -56.49 -1.16 -9.17 16 18 C -0.55 -30.44 9.50 67.95 0.65 -29.80 16 19 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 20 C 0.02 0.87 5.49 84.86 0.47 1.34 16 21 N -0.91 -54.78 13.22 21.65 0.29 -54.49 16 22 Si 1.00 42.43 29.55 68.60 2.03 44.46 16 23 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 24 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 26 C 0.01 0.06 10.48 85.09 0.89 0.95 16 27 N -0.39 -5.40 10.41 -187.84 -1.96 -7.36 16 28 H 0.21 0.45 8.06 -2.91 -0.02 0.43 16 29 H 0.42 1.78 8.47 -92.71 -0.79 1.00 16 30 H 0.10 -0.16 7.94 -2.39 -0.02 -0.18 16 31 H 0.10 -0.19 7.92 -2.39 -0.02 -0.21 16 32 H 0.39 0.54 9.04 -74.06 -0.67 -0.13 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.42 5.63 8.47 -92.71 -0.79 4.84 16 36 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 37 H 0.11 3.55 8.14 -2.40 -0.02 3.53 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.20 0.50 6.70 -2.91 -0.02 0.49 16 Total: -1.00 -83.93 370.72 -2.36 -86.29 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -1.09 Total: 3.36 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 7.67 Total: 1.85 kcal Atomic # 7 Polarization: -90.46 SS G_CDS: -7.81 Total: -98.27 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -1.99 Total: -28.51 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.17 kcal Total: -83.93 -2.36 -86.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105755662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.302 kcal (2) G-P(sol) polarization free energy of solvation -83.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds