Wall clock time and date at job start Tue Mar 31 2020 19:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31401 * 1 3 3 Si 1.86803 * 120.00248 * 2 1 4 4 H 1.48499 * 109.47256 * 240.00035 * 3 2 1 5 5 H 1.48500 * 109.46773 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47118 * 119.99926 * 3 2 1 7 7 C 1.38955 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99682 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00351 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00436 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00028 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00326 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47344 * 180.02562 * 12 10 9 14 14 C 1.48555 * 110.99777 * 190.00144 * 13 12 10 15 15 C 1.54383 * 104.59089 * 200.96044 * 14 13 12 16 16 H 1.08994 * 117.60676 * 242.74981 * 15 14 13 17 17 C 1.54264 * 105.06154 * 23.85598 * 15 14 13 18 18 H 1.08990 * 121.78735 * 222.12447 * 17 15 14 19 19 C 1.48565 * 110.99601 * 74.58323 * 13 12 10 20 20 C 1.53005 * 118.12558 * 87.23403 * 15 14 13 21 21 H 1.09002 * 117.44388 * 15.97531 * 20 15 14 22 22 N 1.46503 * 117.44267 * 160.72762 * 20 15 14 23 23 C 1.34776 * 119.99676 * 205.16085 * 22 20 15 24 24 O 1.21561 * 120.00271 * 0.02562 * 23 22 20 25 25 C 1.47756 * 119.99793 * 179.97438 * 23 22 20 26 26 C 1.39350 * 124.11651 * 179.72051 * 25 23 22 27 27 N 1.30092 * 112.14398 * 179.84723 * 26 25 23 28 28 S 1.55919 * 108.75559 * 0.41046 * 27 26 25 29 29 N 1.31489 * 124.11650 * 0.02925 * 25 23 22 30 30 H 0.97005 * 120.00151 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99673 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46855 * 60.00337 * 12 10 9 33 33 H 1.08997 * 109.46970 * 300.00707 * 12 10 9 34 34 H 1.09002 * 110.40990 * 82.19003 * 14 13 12 35 35 H 1.08997 * 110.41789 * 319.73870 * 14 13 12 36 36 H 1.08993 * 110.41262 * 277.82136 * 19 13 12 37 37 H 1.09003 * 110.40979 * 40.14206 * 19 13 12 38 38 H 0.96998 * 120.00087 * 25.16131 * 22 20 15 39 39 H 1.08003 * 123.92543 * 0.02795 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0087 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5579 -0.0021 12 6 1.2436 -4.8630 -0.0022 13 7 2.1982 -5.9796 -0.0027 14 6 1.5059 -7.2716 -0.2441 15 6 2.4747 -8.3406 0.3055 16 1 2.8811 -9.0647 -0.4005 17 6 3.3421 -7.5995 1.3439 18 1 4.4174 -7.7622 1.4148 19 6 2.8243 -6.1452 1.3344 20 6 2.3814 -8.7042 1.7888 21 1 1.4816 -8.4018 2.3245 22 7 2.9681 -9.9790 2.2097 23 6 2.5121 -10.5977 3.3168 24 8 1.6138 -10.0983 3.9658 25 6 3.1034 -11.8836 3.7410 26 6 2.7028 -12.5930 4.8715 27 7 3.3768 -13.6953 5.0231 28 16 4.4133 -13.8126 3.8642 29 7 4.0757 -12.4951 3.1009 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 -0.0005 32 1 0.6167 -4.9201 -0.8920 33 1 0.6172 -4.9212 0.8879 34 1 1.3409 -7.4209 -1.3112 35 1 0.5596 -7.3027 0.2958 36 1 3.6518 -5.4463 1.4558 37 1 2.0847 -5.9978 2.1214 38 1 3.6847 -10.3776 1.6916 39 1 1.9214 -12.2670 5.5421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113931586.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:55 Heat of formation + Delta-G solvation = 41.371672 kcal Electronic energy + Delta-G solvation = -25142.461523 eV Core-core repulsion = 21213.869754 eV Total energy + Delta-G solvation = -3928.591769 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.63139 -40.33408 -39.05884 -37.89638 -35.33305 -34.24134 -33.81357 -32.52356 -31.17544 -28.37499 -28.26865 -27.39666 -24.85911 -23.88607 -22.20181 -21.14400 -20.70627 -20.32921 -19.91713 -19.10803 -18.14991 -17.80686 -17.00390 -16.58107 -16.03927 -15.82243 -15.23734 -15.03531 -14.85182 -14.54754 -14.47411 -13.74844 -13.58359 -13.42920 -12.91937 -12.78270 -12.55063 -12.13008 -11.97682 -11.93051 -11.75408 -11.57673 -11.48970 -11.45416 -11.32617 -11.04714 -10.80066 -10.59197 -10.42459 -10.19968 -10.13373 -9.76958 -9.46234 -9.07199 -8.49865 -8.01206 -7.92516 -6.38970 -3.79656 -0.12956 0.83164 1.01544 1.07940 2.45690 2.57663 3.21982 3.27440 3.31799 3.53182 3.87275 3.93535 4.01975 4.21612 4.27787 4.50841 4.54423 4.56311 4.75680 4.96738 4.98645 5.17338 5.24311 5.27120 5.45652 5.56272 5.65572 5.78129 5.82042 5.84690 5.96502 5.99127 6.17131 6.29475 6.37183 6.98248 7.04347 7.18525 7.57478 7.62088 8.08685 8.64891 9.20960 9.57465 10.09636 10.78796 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.033885 B = 0.001714 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.122989 B =16331.054425 C =16410.918794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.445 3.555 11 O -0.577 6.577 12 C 0.034 3.966 13 N -0.483 5.483 14 C 0.060 3.940 15 C -0.164 4.164 16 H 0.121 0.879 17 C -0.158 4.158 18 H 0.120 0.880 19 C 0.069 3.931 20 C 0.100 3.900 21 H 0.138 0.862 22 N -0.677 5.677 23 C 0.610 3.390 24 O -0.516 6.516 25 C 0.012 3.988 26 C 0.092 3.908 27 N -0.578 5.578 28 S 0.727 5.273 29 N -0.549 5.549 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.104 0.896 37 H 0.044 0.956 38 H 0.412 0.588 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.044 -28.222 5.902 29.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.231 3.769 11 O -0.461 6.461 12 C -0.098 4.098 13 N -0.207 5.207 14 C -0.068 4.068 15 C -0.184 4.184 16 H 0.139 0.861 17 C -0.179 4.179 18 H 0.138 0.862 19 C -0.059 4.059 20 C -0.006 4.006 21 H 0.156 0.844 22 N -0.326 5.326 23 C 0.390 3.610 24 O -0.390 6.390 25 C -0.163 4.163 26 C -0.101 4.101 27 N -0.418 5.418 28 S 0.768 5.232 29 N -0.399 5.399 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.122 0.878 37 H 0.063 0.937 38 H 0.248 0.752 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 5.876 -29.062 5.566 30.168 hybrid contribution -1.671 1.746 0.639 2.500 sum 4.205 -27.316 6.204 28.325 Atomic orbital electron populations 1.69601 1.05916 1.28208 1.50673 1.25251 0.95632 0.99679 0.97406 0.85922 0.78751 0.80520 0.79040 1.19919 1.21012 1.19952 1.19642 0.93315 0.82224 1.47620 0.87995 1.41848 1.09165 1.04553 1.64676 1.19678 0.88392 0.84439 0.84439 1.90509 1.13651 1.86973 1.54927 1.22066 0.94125 0.91723 1.01875 1.65290 1.26766 1.00916 1.27703 1.22671 0.94550 0.88126 1.01431 1.23835 1.02555 1.00983 0.91047 0.86148 1.24021 0.98230 0.92338 1.03295 0.86209 1.22668 1.00195 0.93366 0.89682 1.21910 0.99069 0.83620 0.95981 0.84436 1.45036 1.38932 1.21997 1.26634 1.16658 0.81967 0.81535 0.80799 1.90865 1.29255 1.64930 1.53999 1.22453 0.97310 1.00238 0.96322 1.23809 1.00597 0.88413 0.97270 1.72282 1.14827 1.24357 1.30364 1.79135 1.27974 1.14233 1.01826 1.72421 1.18442 1.14544 1.34501 0.91861 0.77511 0.89130 0.92956 0.89247 0.93483 0.87812 0.93745 0.75246 0.76723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 9 N -0.57 -14.36 5.29 -10.96 -0.06 -14.42 16 10 C 0.45 10.52 7.63 -10.99 -0.08 10.44 16 11 O -0.58 -15.61 14.80 5.55 0.08 -15.53 16 12 C 0.03 0.60 5.32 -4.97 -0.03 0.57 16 13 N -0.48 -7.92 4.98 -231.41 -1.15 -9.07 16 14 C 0.06 0.74 6.26 -2.18 -0.01 0.73 16 15 C -0.16 -1.75 7.05 -89.23 -0.63 -2.38 16 16 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 17 C -0.16 -1.91 7.05 -89.23 -0.63 -2.54 16 18 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 19 C 0.07 1.07 5.73 -2.18 -0.01 1.05 16 20 C 0.10 1.07 5.98 -67.92 -0.41 0.66 16 21 H 0.14 1.64 7.40 -51.93 -0.38 1.26 16 22 N -0.68 -6.33 5.56 -54.77 -0.30 -6.64 16 23 C 0.61 6.35 7.82 -12.37 -0.10 6.25 16 24 O -0.52 -6.77 16.37 5.31 0.09 -6.69 16 25 C 0.01 0.10 6.81 -83.71 -0.57 -0.47 16 26 C 0.09 0.71 11.22 -17.87 -0.20 0.50 16 27 N -0.58 -4.34 11.41 19.42 0.22 -4.12 16 28 S 0.73 3.88 23.69 -107.50 -2.55 1.34 16 29 N -0.55 -4.14 11.00 23.18 0.26 -3.89 16 30 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 32 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 33 H 0.05 0.85 7.76 -51.93 -0.40 0.44 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.54 8.00 -51.93 -0.42 0.12 16 36 H 0.10 1.90 7.24 -51.93 -0.38 1.53 16 37 H 0.04 0.67 7.75 -51.93 -0.40 0.27 16 38 H 0.41 3.19 8.41 -40.82 -0.34 2.85 16 39 H 0.22 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 353.55 15.07 5.33 5.33 Total: -1.00 -33.55 353.55 -9.56 -43.11 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -4.27 Total: 11.52 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -2.91 Total: 6.83 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -0.31 Total: -62.04 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: 0.17 Total: -22.22 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -2.55 Total: 1.34 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.55 -9.56 -43.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113931586.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.479 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds