Wall clock time and date at job start Tue Mar 31 2020 19:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31401 * 1 3 3 Si 1.86803 * 120.00248 * 2 1 4 4 H 1.48499 * 109.47256 * 240.00035 * 3 2 1 5 5 H 1.48500 * 109.46773 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47118 * 119.99926 * 3 2 1 7 7 C 1.38955 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99682 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00351 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00436 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00028 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00326 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47344 * 180.02562 * 12 10 9 14 14 C 1.48555 * 110.99777 * 190.00144 * 13 12 10 15 15 C 1.54383 * 104.59089 * 200.96044 * 14 13 12 16 16 H 1.08994 * 117.60676 * 242.74981 * 15 14 13 17 17 C 1.54264 * 105.06154 * 23.85598 * 15 14 13 18 18 H 1.08990 * 121.78735 * 222.12447 * 17 15 14 19 19 C 1.48565 * 110.99601 * 74.58323 * 13 12 10 20 20 C 1.53005 * 118.12558 * 87.23403 * 15 14 13 21 21 H 1.09002 * 117.44388 * 15.97531 * 20 15 14 22 22 N 1.46503 * 117.44267 * 160.72762 * 20 15 14 23 23 C 1.34776 * 119.99676 * 205.16085 * 22 20 15 24 24 O 1.21561 * 120.00271 * 0.02562 * 23 22 20 25 25 C 1.47756 * 119.99793 * 179.97438 * 23 22 20 26 26 C 1.39350 * 124.11651 * 179.72051 * 25 23 22 27 27 N 1.30092 * 112.14398 * 179.84723 * 26 25 23 28 28 S 1.55919 * 108.75559 * 0.41046 * 27 26 25 29 29 N 1.31489 * 124.11650 * 0.02925 * 25 23 22 30 30 H 0.97005 * 120.00151 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99673 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46855 * 60.00337 * 12 10 9 33 33 H 1.08997 * 109.46970 * 300.00707 * 12 10 9 34 34 H 1.09002 * 110.40990 * 82.19003 * 14 13 12 35 35 H 1.08997 * 110.41789 * 319.73870 * 14 13 12 36 36 H 1.08993 * 110.41262 * 277.82136 * 19 13 12 37 37 H 1.09003 * 110.40979 * 40.14206 * 19 13 12 38 38 H 0.96998 * 120.00087 * 25.16131 * 22 20 15 39 39 H 1.08003 * 123.92543 * 0.02795 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0087 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5579 -0.0021 12 6 1.2436 -4.8630 -0.0022 13 7 2.1982 -5.9796 -0.0027 14 6 1.5059 -7.2716 -0.2441 15 6 2.4747 -8.3406 0.3055 16 1 2.8811 -9.0647 -0.4005 17 6 3.3421 -7.5995 1.3439 18 1 4.4174 -7.7622 1.4148 19 6 2.8243 -6.1452 1.3344 20 6 2.3814 -8.7042 1.7888 21 1 1.4816 -8.4018 2.3245 22 7 2.9681 -9.9790 2.2097 23 6 2.5121 -10.5977 3.3168 24 8 1.6138 -10.0983 3.9658 25 6 3.1034 -11.8836 3.7410 26 6 2.7028 -12.5930 4.8715 27 7 3.3768 -13.6953 5.0231 28 16 4.4133 -13.8126 3.8642 29 7 4.0757 -12.4951 3.1009 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 -0.0005 32 1 0.6167 -4.9201 -0.8920 33 1 0.6172 -4.9212 0.8879 34 1 1.3409 -7.4209 -1.3112 35 1 0.5596 -7.3027 0.2958 36 1 3.6518 -5.4463 1.4558 37 1 2.0847 -5.9978 2.1214 38 1 3.6847 -10.3776 1.6916 39 1 1.9214 -12.2670 5.5421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113931586.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:54 Heat of formation + Delta-G solvation = 13.590100 kcal Electronic energy + Delta-G solvation = -25143.666223 eV Core-core repulsion = 21213.869754 eV Total energy + Delta-G solvation = -3929.796469 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.25800 -41.32424 -40.14927 -39.50431 -36.45179 -35.81452 -34.84412 -33.55823 -33.17007 -29.44603 -29.31875 -28.46161 -26.57099 -24.83333 -23.26918 -22.05335 -21.55097 -21.31831 -20.89229 -20.43357 -19.84986 -18.87880 -17.94442 -17.60866 -17.19009 -16.66790 -16.59136 -16.33660 -16.17586 -15.69303 -15.64712 -15.39796 -14.90246 -14.78883 -14.15107 -13.87494 -13.55156 -13.41037 -13.28316 -13.13625 -12.94151 -12.56093 -12.52186 -12.45969 -12.41573 -12.30250 -12.12956 -12.11901 -11.93380 -11.47212 -11.38520 -11.09605 -10.31306 -10.30109 -9.99721 -9.90032 -9.35915 -8.45075 -5.93637 -0.70086 0.30649 0.39122 0.59826 1.40360 1.41786 1.52795 1.69033 1.82919 2.07524 2.29347 2.62642 2.81889 3.21596 3.27573 3.39338 3.54324 3.62347 3.65210 3.80998 3.98520 4.08154 4.23945 4.29220 4.42078 4.46489 4.50663 4.54464 4.59670 4.74821 4.91974 5.07423 5.11882 5.24629 5.35756 5.41783 5.81896 5.87905 6.08397 6.25062 6.62470 6.87274 7.14571 7.58349 8.14583 8.72148 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.033885 B = 0.001714 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.122989 B =16331.054425 C =16410.918794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.575 5.575 10 C 0.442 3.558 11 O -0.616 6.616 12 C 0.046 3.954 13 N -0.506 5.506 14 C 0.059 3.941 15 C -0.145 4.145 16 H 0.145 0.855 17 C -0.168 4.168 18 H 0.127 0.873 19 C 0.068 3.932 20 C 0.113 3.887 21 H 0.127 0.873 22 N -0.668 5.668 23 C 0.611 3.389 24 O -0.550 6.550 25 C -0.005 4.005 26 C 0.090 3.910 27 N -0.601 5.601 28 S 0.805 5.195 29 N -0.562 5.562 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.421 0.579 39 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.070 -30.136 5.497 30.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.213 5.213 10 C 0.229 3.771 11 O -0.502 6.502 12 C -0.085 4.085 13 N -0.230 5.230 14 C -0.068 4.068 15 C -0.165 4.165 16 H 0.163 0.837 17 C -0.188 4.188 18 H 0.144 0.856 19 C -0.060 4.060 20 C 0.006 3.994 21 H 0.145 0.855 22 N -0.317 5.317 23 C 0.393 3.607 24 O -0.427 6.427 25 C -0.178 4.178 26 C -0.102 4.102 27 N -0.444 5.444 28 S 0.846 5.154 29 N -0.415 5.415 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.259 0.741 39 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 5.879 -30.995 5.153 31.966 hybrid contribution -1.582 2.191 0.765 2.808 sum 4.297 -28.804 5.918 29.718 Atomic orbital electron populations 1.69664 1.06793 1.29299 1.50403 1.26030 0.96560 1.02372 0.96377 0.84996 0.77757 0.76715 0.78903 1.19716 1.19473 1.19798 1.19614 0.92664 0.84032 1.49928 0.90382 1.41922 1.09291 1.04675 1.65413 1.20757 0.88292 0.85898 0.82141 1.90480 1.15743 1.87876 1.56095 1.21918 0.93795 0.88991 1.03811 1.65227 1.27427 1.02277 1.28107 1.22774 0.95050 0.86286 1.02718 1.23898 1.01025 1.00384 0.91162 0.83692 1.23846 0.98852 0.90624 1.05500 0.85551 1.22505 0.98951 0.94914 0.89599 1.21674 0.98024 0.83578 0.96078 0.85538 1.44934 1.38965 1.21315 1.26521 1.16883 0.81452 0.81970 0.80417 1.90845 1.30797 1.66028 1.54993 1.22104 0.98431 1.00032 0.97247 1.23873 1.00798 0.88323 0.97180 1.72187 1.15797 1.24572 1.31799 1.78856 1.25358 1.11690 0.99496 1.72246 1.18312 1.15666 1.35252 0.91337 0.77030 0.86759 0.91135 0.87669 0.92212 0.91670 0.93913 0.74097 0.76004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.16 13.05 21.66 0.28 -49.88 16 2 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 3 Si 0.99 43.45 29.55 68.60 2.03 45.47 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.58 -29.94 5.29 -306.99 -1.62 -31.56 16 10 C 0.44 21.37 7.63 87.66 0.67 22.04 16 11 O -0.62 -34.65 14.80 -3.06 -0.05 -34.69 16 12 C 0.05 1.61 5.32 85.56 0.46 2.07 16 13 N -0.51 -16.27 4.98 -886.04 -4.41 -20.68 16 14 C 0.06 1.31 6.26 86.45 0.54 1.85 16 15 C -0.14 -2.75 7.05 -9.89 -0.07 -2.82 16 16 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 17 C -0.17 -3.92 7.05 -9.90 -0.07 -3.99 16 18 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 19 C 0.07 2.16 5.73 86.45 0.50 2.66 16 20 C 0.11 2.26 5.98 44.99 0.27 2.53 16 21 H 0.13 2.92 7.40 -2.39 -0.02 2.90 16 22 N -0.67 -11.53 5.56 -445.47 -2.48 -14.01 16 23 C 0.61 12.23 7.82 86.76 0.68 12.91 16 24 O -0.55 -14.37 16.37 -3.91 -0.06 -14.43 16 25 C -0.01 -0.09 6.81 41.98 0.29 0.20 16 26 C 0.09 1.27 11.22 85.22 0.96 2.23 16 27 N -0.60 -8.01 11.41 -92.46 -1.05 -9.06 16 28 S 0.80 6.69 23.69 -56.49 -1.34 5.35 16 29 N -0.56 -7.37 11.00 -80.59 -0.89 -8.25 16 30 H 0.28 14.17 8.31 -92.70 -0.77 13.40 16 31 H 0.40 19.52 7.90 -92.70 -0.73 18.79 16 32 H 0.11 3.44 8.08 -2.39 -0.02 3.42 16 33 H 0.07 2.21 7.76 -2.39 -0.02 2.19 16 34 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.06 1.21 8.00 -2.39 -0.02 1.19 16 36 H 0.06 2.54 7.24 -2.39 -0.02 2.53 16 37 H 0.04 1.33 7.75 -2.39 -0.02 1.31 16 38 H 0.42 5.67 8.41 -92.71 -0.78 4.89 16 39 H 0.22 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -74.01 353.55 -4.47 -78.48 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: -0.37 Total: 32.18 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 5.49 Total: 21.07 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -10.17 Total: -133.44 kcal Atomic # 8 Polarization: -49.02 SS G_CDS: -0.11 Total: -49.13 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 6.69 SS G_CDS: -1.34 Total: 5.35 kcal Total: -74.01 -4.47 -78.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113931586.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.068 kcal (2) G-P(sol) polarization free energy of solvation -74.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds