Wall clock time and date at job start Tue Mar 31 2020 19:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00118 * 2 1 4 4 H 1.48500 * 109.47167 * 240.00111 * 3 2 1 5 5 H 1.48496 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47309 * 119.99946 * 3 2 1 7 7 C 1.38950 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99885 * 180.02562 * 7 2 1 9 9 N 1.37090 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99997 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00382 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99887 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47157 * 179.97438 * 12 10 9 14 14 C 1.48562 * 111.00067 * 285.42107 * 13 12 10 15 15 C 1.54428 * 104.53778 * 200.94745 * 14 13 12 16 16 H 1.09002 * 118.15886 * 244.18479 * 15 14 13 17 17 C 1.54122 * 105.10462 * 23.89943 * 15 14 13 18 18 H 1.09004 * 123.03807 * 221.57958 * 17 15 14 19 19 C 1.48555 * 111.00017 * 170.00182 * 13 12 10 20 20 C 1.52995 * 59.75785 * 114.03854 * 17 15 14 21 21 H 1.08991 * 117.44659 * 252.37851 * 20 17 15 22 22 N 1.46505 * 117.44234 * 107.62378 * 20 17 15 23 23 C 1.34777 * 119.99724 * 154.84134 * 22 20 17 24 24 O 1.21603 * 120.00258 * 359.97438 * 23 22 20 25 25 C 1.47445 * 119.99414 * 179.72682 * 23 22 20 26 26 C 1.37989 * 124.15164 * 180.02562 * 25 23 22 27 27 S 1.72098 * 104.03238 * 179.89767 * 26 25 23 28 28 N 1.56402 * 96.15564 * 0.32463 * 27 26 25 29 29 N 1.27416 * 109.87869 * 359.79828 * 28 27 26 30 30 H 0.97000 * 119.99903 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00203 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.46937 * 60.00039 * 12 10 9 33 33 H 1.09000 * 109.47233 * 299.99968 * 12 10 9 34 34 H 1.09005 * 110.41263 * 319.73636 * 14 13 12 35 35 H 1.08997 * 110.41073 * 82.06355 * 14 13 12 36 36 H 1.08996 * 110.41463 * 40.26602 * 19 13 12 37 37 H 1.09000 * 110.41051 * 277.81829 * 19 13 12 38 38 H 0.97000 * 119.99792 * 334.83702 * 22 20 17 39 39 H 1.08003 * 127.98176 * 359.95623 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1984 -5.9795 -0.0007 14 6 2.8236 -6.1445 -1.3382 15 6 3.3412 -7.5994 -1.3473 16 1 4.4167 -7.7623 -1.4178 17 6 2.4748 -8.3404 -0.3102 18 1 2.8817 -9.0649 0.3953 19 6 1.5064 -7.2716 0.2406 20 6 2.3805 -8.7033 -1.7935 21 1 1.4807 -8.4001 -2.3286 22 7 2.9661 -9.9783 -2.2152 23 6 2.5091 -10.5963 -3.3224 24 8 1.6105 -10.0958 -3.9710 25 6 3.1026 -11.8764 -3.7501 26 6 2.7024 -12.5810 -4.8670 27 16 3.7240 -13.9660 -4.8749 28 7 4.5132 -13.5997 -3.5752 29 7 4.0844 -12.4960 -3.1046 30 1 -0.4850 0.8400 0.0004 31 1 0.3534 -2.3906 -0.0005 32 1 0.6168 -4.9208 -0.8897 33 1 0.6175 -4.9204 0.8903 34 1 2.0830 -5.9989 -2.1247 35 1 3.6498 -5.4441 -1.4606 36 1 0.5597 -7.3025 -0.2987 37 1 1.3420 -7.4214 1.3077 38 1 3.6827 -10.3777 -1.6976 39 1 1.9277 -12.3224 -5.5737 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114635451.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:40 Heat of formation + Delta-G solvation = 53.462304 kcal Electronic energy + Delta-G solvation = -25117.561481 eV Core-core repulsion = 21189.494001 eV Total energy + Delta-G solvation = -3928.067480 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.61506 -40.37870 -39.19077 -37.90331 -35.28869 -33.86923 -33.01538 -32.32146 -31.16837 -28.34635 -27.99275 -27.36607 -25.06665 -24.19150 -22.22513 -21.32113 -21.04421 -20.32325 -19.63170 -19.09062 -17.82539 -17.48684 -16.78687 -16.54810 -16.20549 -15.84124 -15.22139 -15.04029 -14.87763 -14.54170 -14.46988 -13.74623 -13.57562 -13.42072 -13.18042 -12.88598 -12.64907 -12.53812 -12.10248 -11.92597 -11.48336 -11.45147 -11.32595 -11.04276 -10.96283 -10.79240 -10.66090 -10.64579 -10.48754 -10.42073 -10.19479 -10.12769 -9.45752 -9.07269 -8.49068 -8.00368 -7.91930 -6.38519 -3.79193 -0.49904 0.34884 0.89208 0.96931 2.48634 2.59369 3.22381 3.25557 3.27769 3.32227 3.54913 3.93234 4.00633 4.11904 4.24350 4.34817 4.52388 4.56551 4.75824 4.77079 5.00220 5.19150 5.25522 5.27664 5.47193 5.57267 5.66475 5.78889 5.85403 5.95907 6.00953 6.16706 6.30077 6.38333 6.79902 7.05380 7.08811 7.19566 7.57985 7.62276 8.09217 8.65448 9.21450 9.57973 10.10192 10.79260 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.034065 B = 0.001699 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.756777 B =16474.981043 C =16585.719476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.566 5.566 10 C 0.445 3.555 11 O -0.577 6.577 12 C 0.034 3.966 13 N -0.483 5.483 14 C 0.069 3.931 15 C -0.158 4.158 16 H 0.121 0.879 17 C -0.164 4.164 18 H 0.122 0.878 19 C 0.060 3.940 20 C 0.099 3.901 21 H 0.137 0.863 22 N -0.678 5.678 23 C 0.610 3.390 24 O -0.519 6.519 25 C -0.022 4.022 26 C -0.234 4.234 27 S 0.468 5.532 28 N -0.289 5.289 29 N -0.211 5.211 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.044 0.956 35 H 0.104 0.896 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.413 0.587 39 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.872 -28.831 -9.124 30.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.203 5.203 10 C 0.231 3.769 11 O -0.460 6.460 12 C -0.098 4.098 13 N -0.207 5.207 14 C -0.059 4.059 15 C -0.179 4.179 16 H 0.139 0.861 17 C -0.184 4.184 18 H 0.140 0.860 19 C -0.068 4.068 20 C -0.007 4.007 21 H 0.155 0.845 22 N -0.326 5.326 23 C 0.392 3.608 24 O -0.393 6.393 25 C -0.170 4.170 26 C -0.391 4.391 27 S 0.604 5.396 28 N -0.269 5.269 29 N -0.082 5.082 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.122 0.878 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.249 0.751 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 3.606 -29.491 -8.766 30.977 hybrid contribution -1.450 1.724 -0.368 2.283 sum 2.156 -27.767 -9.134 29.310 Atomic orbital electron populations 1.69604 1.05911 1.28195 1.50713 1.25251 0.95632 0.99676 0.97416 0.85921 0.78748 0.80518 0.79043 1.19950 1.21017 1.19923 1.19642 0.93322 0.82229 1.47590 0.87991 1.41847 1.09159 1.04551 1.64708 1.19683 0.88395 0.84439 0.84423 1.90511 1.13646 1.86970 1.54892 1.22066 0.94124 0.91732 1.01862 1.65287 1.26796 1.00911 1.27674 1.22682 1.00179 0.93383 0.89657 1.24012 0.98288 0.92306 1.03266 0.86131 1.23820 1.02534 1.00987 0.91047 0.86048 1.22673 0.94533 0.88127 1.01441 1.21901 0.99086 0.83658 0.96029 0.84501 1.45068 1.38921 1.21991 1.26654 1.16552 0.81981 0.81510 0.80801 1.90870 1.29379 1.64871 1.54210 1.22608 0.98220 1.00313 0.95846 1.28934 1.07284 1.00384 1.02542 1.81624 1.16581 1.18972 1.22402 1.78646 1.24754 1.12415 1.11101 1.71536 1.09885 1.01289 1.25453 0.91871 0.77517 0.92983 0.89126 0.93800 0.87777 0.93520 0.89222 0.75088 0.77244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.37 9.68 -14.94 -0.14 -8.51 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.57 -14.43 5.29 -10.97 -0.06 -14.48 16 10 C 0.45 10.58 7.63 -10.98 -0.08 10.50 16 11 O -0.58 -15.68 14.80 5.55 0.08 -15.60 16 12 C 0.03 0.60 5.32 -4.98 -0.03 0.58 16 13 N -0.48 -8.02 4.98 -231.37 -1.15 -9.17 16 14 C 0.07 1.08 5.73 -2.15 -0.01 1.07 16 15 C -0.16 -1.96 7.04 -89.29 -0.63 -2.59 16 16 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 17 C -0.16 -1.80 7.04 -89.31 -0.63 -2.43 16 18 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 19 C 0.06 0.76 6.26 -2.18 -0.01 0.74 16 20 C 0.10 1.10 5.98 -67.93 -0.41 0.69 16 21 H 0.14 1.68 7.40 -51.93 -0.38 1.29 16 22 N -0.68 -6.67 5.56 -54.88 -0.31 -6.98 16 23 C 0.61 6.63 7.81 -12.51 -0.10 6.53 16 24 O -0.52 -7.04 16.36 5.27 0.09 -6.95 16 25 C -0.02 -0.20 6.87 -83.78 -0.58 -0.78 16 26 C -0.23 -1.39 11.21 30.64 0.34 -1.05 16 27 S 0.47 2.05 23.38 -107.50 -2.51 -0.47 16 28 N -0.29 -2.40 12.49 60.35 0.75 -1.64 16 29 N -0.21 -1.98 11.24 32.74 0.37 -1.61 16 30 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 32 H 0.05 0.85 7.77 -51.93 -0.40 0.44 16 33 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 34 H 0.04 0.67 7.75 -51.93 -0.40 0.27 16 35 H 0.10 1.93 7.23 -51.93 -0.38 1.56 16 36 H 0.05 0.54 8.00 -51.93 -0.42 0.13 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.41 3.44 8.41 -40.82 -0.34 3.10 16 39 H 0.21 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 354.57 15.07 5.34 5.34 Total: -1.00 -34.24 354.57 -8.33 -42.57 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -4.27 Total: 11.52 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -2.37 Total: 5.25 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.33 Total: -57.87 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: 0.17 Total: -22.55 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.51 Total: -0.47 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.24 -8.33 -42.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114635451.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.032 kcal (2) G-P(sol) polarization free energy of solvation -34.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds