Wall clock time and date at job start Tue Mar 31 2020 19:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00118 * 2 1 4 4 H 1.48500 * 109.47167 * 240.00111 * 3 2 1 5 5 H 1.48496 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47309 * 119.99946 * 3 2 1 7 7 C 1.38950 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99885 * 180.02562 * 7 2 1 9 9 N 1.37090 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99997 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00382 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99887 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47157 * 179.97438 * 12 10 9 14 14 C 1.48562 * 111.00067 * 285.42107 * 13 12 10 15 15 C 1.54428 * 104.53778 * 200.94745 * 14 13 12 16 16 H 1.09002 * 118.15886 * 244.18479 * 15 14 13 17 17 C 1.54122 * 105.10462 * 23.89943 * 15 14 13 18 18 H 1.09004 * 123.03807 * 221.57958 * 17 15 14 19 19 C 1.48555 * 111.00017 * 170.00182 * 13 12 10 20 20 C 1.52995 * 59.75785 * 114.03854 * 17 15 14 21 21 H 1.08991 * 117.44659 * 252.37851 * 20 17 15 22 22 N 1.46505 * 117.44234 * 107.62378 * 20 17 15 23 23 C 1.34777 * 119.99724 * 154.84134 * 22 20 17 24 24 O 1.21603 * 120.00258 * 359.97438 * 23 22 20 25 25 C 1.47445 * 119.99414 * 179.72682 * 23 22 20 26 26 C 1.37989 * 124.15164 * 180.02562 * 25 23 22 27 27 S 1.72098 * 104.03238 * 179.89767 * 26 25 23 28 28 N 1.56402 * 96.15564 * 0.32463 * 27 26 25 29 29 N 1.27416 * 109.87869 * 359.79828 * 28 27 26 30 30 H 0.97000 * 119.99903 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00203 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.46937 * 60.00039 * 12 10 9 33 33 H 1.09000 * 109.47233 * 299.99968 * 12 10 9 34 34 H 1.09005 * 110.41263 * 319.73636 * 14 13 12 35 35 H 1.08997 * 110.41073 * 82.06355 * 14 13 12 36 36 H 1.08996 * 110.41463 * 40.26602 * 19 13 12 37 37 H 1.09000 * 110.41051 * 277.81829 * 19 13 12 38 38 H 0.97000 * 119.99792 * 334.83702 * 22 20 17 39 39 H 1.08003 * 127.98176 * 359.95623 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1984 -5.9795 -0.0007 14 6 2.8236 -6.1445 -1.3382 15 6 3.3412 -7.5994 -1.3473 16 1 4.4167 -7.7623 -1.4178 17 6 2.4748 -8.3404 -0.3102 18 1 2.8817 -9.0649 0.3953 19 6 1.5064 -7.2716 0.2406 20 6 2.3805 -8.7033 -1.7935 21 1 1.4807 -8.4001 -2.3286 22 7 2.9661 -9.9783 -2.2152 23 6 2.5091 -10.5963 -3.3224 24 8 1.6105 -10.0958 -3.9710 25 6 3.1026 -11.8764 -3.7501 26 6 2.7024 -12.5810 -4.8670 27 16 3.7240 -13.9660 -4.8749 28 7 4.5132 -13.5997 -3.5752 29 7 4.0844 -12.4960 -3.1046 30 1 -0.4850 0.8400 0.0004 31 1 0.3534 -2.3906 -0.0005 32 1 0.6168 -4.9208 -0.8897 33 1 0.6175 -4.9204 0.8903 34 1 2.0830 -5.9989 -2.1247 35 1 3.6498 -5.4441 -1.4606 36 1 0.5597 -7.3025 -0.2987 37 1 1.3420 -7.4214 1.3077 38 1 3.6827 -10.3777 -1.6976 39 1 1.9277 -12.3224 -5.5737 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114635451.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:39 Heat of formation + Delta-G solvation = 25.219530 kcal Electronic energy + Delta-G solvation = -25118.786180 eV Core-core repulsion = 21189.494001 eV Total energy + Delta-G solvation = -3929.292179 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.23643 -41.37341 -40.26870 -39.58066 -36.45855 -35.80442 -33.97020 -33.25733 -32.99120 -29.44564 -29.21657 -28.16866 -26.64609 -25.31251 -23.35041 -22.07792 -21.91213 -21.37973 -20.90029 -20.33157 -19.84953 -18.29292 -17.68033 -17.52639 -17.15814 -16.79570 -16.62547 -16.33111 -16.18621 -15.71129 -15.67937 -15.39272 -14.91228 -14.79870 -14.16357 -13.88781 -13.70779 -13.55511 -13.39380 -13.18598 -13.04411 -12.94003 -12.53107 -12.47575 -12.42062 -12.12109 -11.95241 -11.66182 -11.47547 -11.31975 -11.21642 -11.12200 -10.93595 -10.31448 -10.00301 -9.95484 -9.36658 -8.45352 -5.93948 -0.97215 -0.08689 0.22621 0.50056 1.40125 1.41564 1.52578 1.70318 1.83215 2.07102 2.29102 2.60865 2.63519 2.82959 3.21237 3.35683 3.52531 3.59982 3.63828 3.75081 3.79806 4.07136 4.22385 4.28022 4.33614 4.41470 4.49568 4.53471 4.58851 4.73381 4.90970 5.06221 5.10827 5.28846 5.41550 5.81127 5.87142 6.07839 6.10278 6.46401 6.62206 6.84470 7.14262 7.57946 8.14250 8.71876 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.034065 B = 0.001699 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.756777 B =16474.981043 C =16585.719476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.575 5.575 10 C 0.442 3.558 11 O -0.616 6.616 12 C 0.046 3.954 13 N -0.506 5.506 14 C 0.069 3.931 15 C -0.168 4.168 16 H 0.126 0.874 17 C -0.146 4.146 18 H 0.145 0.855 19 C 0.059 3.941 20 C 0.112 3.888 21 H 0.127 0.873 22 N -0.670 5.670 23 C 0.611 3.389 24 O -0.552 6.552 25 C -0.046 4.046 26 C -0.236 4.236 27 S 0.569 5.431 28 N -0.331 5.331 29 N -0.232 5.232 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.043 0.957 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.105 0.895 38 H 0.421 0.579 39 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.284 -30.834 -9.558 32.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.096 0.904 9 N -0.213 5.213 10 C 0.229 3.771 11 O -0.502 6.502 12 C -0.085 4.085 13 N -0.231 5.231 14 C -0.059 4.059 15 C -0.188 4.188 16 H 0.144 0.856 17 C -0.165 4.165 18 H 0.162 0.838 19 C -0.068 4.068 20 C 0.006 3.994 21 H 0.145 0.855 22 N -0.319 5.319 23 C 0.394 3.606 24 O -0.429 6.429 25 C -0.194 4.194 26 C -0.393 4.393 27 S 0.704 5.296 28 N -0.312 5.312 29 N -0.101 5.101 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.089 0.911 33 H 0.133 0.867 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.124 0.876 38 H 0.259 0.741 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 3.015 -31.526 -9.179 32.973 hybrid contribution -1.256 2.198 -0.338 2.554 sum 1.759 -29.328 -9.517 30.884 Atomic orbital electron populations 1.69666 1.06785 1.29301 1.50400 1.26030 0.96563 1.02364 0.96363 0.84994 0.77757 0.76713 0.78898 1.19789 1.19440 1.19749 1.19614 0.92668 0.84041 1.49940 0.90396 1.41919 1.09286 1.04662 1.65415 1.20757 0.88290 0.85901 0.82153 1.90482 1.15753 1.87873 1.56087 1.21919 0.93780 0.88972 1.03829 1.65222 1.27486 1.02280 1.28068 1.22515 0.98967 0.94811 0.89613 1.23839 0.98852 0.90688 1.05471 0.85612 1.23886 1.01076 1.00414 0.91156 0.83752 1.22771 0.95016 0.86247 1.02728 1.21673 0.98050 0.83582 0.96124 0.85495 1.45004 1.38932 1.21366 1.26610 1.16807 0.81451 0.81991 0.80374 1.90846 1.30897 1.65981 1.55187 1.22401 0.99385 1.00208 0.97356 1.29312 1.07501 1.00721 1.01720 1.81266 1.13492 1.16025 1.18840 1.78318 1.26633 1.12585 1.13701 1.71566 1.10347 1.01868 1.26365 0.91331 0.77023 0.91111 0.86738 0.93872 0.91616 0.92166 0.87643 0.74085 0.75420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.26 13.05 21.66 0.28 -49.98 16 2 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 3 Si 0.99 43.59 29.55 68.60 2.03 45.62 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.33 -19.23 9.68 84.04 0.81 -18.42 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.58 -30.06 5.29 -306.99 -1.62 -31.68 16 10 C 0.44 21.51 7.63 87.66 0.67 22.18 16 11 O -0.62 -34.89 14.80 -3.06 -0.05 -34.94 16 12 C 0.05 1.63 5.32 85.56 0.46 2.09 16 13 N -0.51 -16.56 4.98 -885.93 -4.41 -20.97 16 14 C 0.07 2.22 5.73 86.47 0.50 2.72 16 15 C -0.17 -4.10 7.04 -9.93 -0.07 -4.17 16 16 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 17 C -0.15 -2.91 7.04 -9.94 -0.07 -2.98 16 18 H 0.14 2.28 8.14 -2.38 -0.02 2.26 16 19 C 0.06 1.36 6.26 86.45 0.54 1.90 16 20 C 0.11 2.37 5.98 44.99 0.27 2.64 16 21 H 0.13 3.02 7.40 -2.39 -0.02 3.01 16 22 N -0.67 -12.61 5.56 -445.79 -2.48 -15.08 16 23 C 0.61 12.90 7.81 86.67 0.68 13.58 16 24 O -0.55 -14.80 16.36 -4.04 -0.07 -14.86 16 25 C -0.05 -0.76 6.87 41.36 0.28 -0.48 16 26 C -0.24 -2.32 11.21 67.76 0.76 -1.56 16 27 S 0.57 3.48 23.38 -56.49 -1.32 2.16 16 28 N -0.33 -5.00 12.49 37.02 0.46 -4.54 16 29 N -0.23 -4.12 11.24 -50.34 -0.57 -4.69 16 30 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.40 19.60 7.90 -92.71 -0.73 18.87 16 32 H 0.07 2.24 7.77 -2.38 -0.02 2.22 16 33 H 0.11 3.48 8.08 -2.39 -0.02 3.46 16 34 H 0.04 1.36 7.75 -2.38 -0.02 1.34 16 35 H 0.07 2.60 7.23 -2.39 -0.02 2.59 16 36 H 0.06 1.25 8.00 -2.39 -0.02 1.23 16 37 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.42 6.57 8.41 -92.71 -0.78 5.79 16 39 H 0.23 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -76.44 354.57 -2.82 -79.26 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: -0.37 Total: 32.48 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 5.29 Total: 17.23 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -8.33 Total: -126.95 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -0.11 Total: -49.80 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -1.32 Total: 2.16 kcal Total: -76.44 -2.82 -79.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114635451.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.479 kcal (2) G-P(sol) polarization free energy of solvation -76.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds