Wall clock time and date at job start Tue Mar 31 2020 19:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39556 * 120.02028 * 132.46283 * 3 2 1 5 5 N 1.32001 * 119.96657 * 179.97438 * 4 3 2 6 6 C 1.32786 * 120.00653 * 0.02562 * 5 4 3 7 7 N 1.38573 * 119.98155 * 179.97438 * 6 5 4 8 8 C 1.46492 * 120.00066 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47526 * 325.00005 * 8 7 6 10 10 C 1.53002 * 109.47345 * 85.00427 * 8 7 6 11 11 O 1.42898 * 109.46848 * 64.99767 * 10 8 7 12 12 C 1.53004 * 109.47165 * 205.00324 * 8 7 6 13 13 N 1.46501 * 109.47231 * 54.99756 * 12 8 7 14 14 C 1.34773 * 119.99940 * 179.97438 * 13 12 8 15 15 O 1.21271 * 120.00305 * 0.02562 * 14 13 12 16 16 C 1.50709 * 119.99833 * 179.97438 * 14 13 12 17 17 S 1.80990 * 109.47008 * 180.02562 * 16 14 13 18 18 C 1.76204 * 100.00122 * 180.02562 * 17 16 14 19 19 H 1.08005 * 119.99738 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00271 * 179.97438 * 18 17 16 21 21 N 1.31629 * 119.99906 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00038 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47066 * 0.02562 * 22 20 18 24 24 H 1.48489 * 109.47105 * 120.00148 * 22 20 18 25 25 H 1.48505 * 109.47004 * 240.00196 * 22 20 18 26 26 C 1.39706 * 120.04266 * 0.02562 * 6 5 4 27 27 N 1.31584 * 120.03596 * 359.95100 * 26 6 5 28 28 H 1.08001 * 120.01754 * 359.97438 * 4 3 2 29 29 H 0.97003 * 119.99458 * 0.02562 * 7 6 5 30 30 H 1.08999 * 109.47086 * 185.00046 * 10 8 7 31 31 H 1.09004 * 109.46794 * 304.99952 * 10 8 7 32 32 H 0.96702 * 113.99179 * 180.02562 * 11 10 8 33 33 H 1.09002 * 109.47351 * 175.00013 * 12 8 7 34 34 H 1.08999 * 109.47049 * 295.00023 * 12 8 7 35 35 H 0.97006 * 119.99706 * 0.02562 * 13 12 8 36 36 H 1.08993 * 109.47154 * 300.00722 * 16 14 13 37 37 H 1.09005 * 109.46589 * 60.00566 * 16 14 13 38 38 H 0.97001 * 119.99929 * 180.02562 * 21 20 18 39 39 H 1.08007 * 119.98562 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2659 0.8167 -0.8914 5 7 4.5859 0.8169 -0.8902 6 6 5.2492 0.0404 -0.0414 7 7 6.6350 0.0406 -0.0409 8 6 7.3672 -0.8162 0.8949 9 1 6.8195 -0.8785 1.8353 10 6 7.5138 -2.2167 0.2964 11 8 8.3304 -2.1511 -0.8744 12 6 8.7542 -0.2233 1.1509 13 7 8.6163 1.1606 1.6114 14 6 9.7140 1.8869 1.9012 15 8 10.8159 1.3951 1.7802 16 6 9.5722 3.3107 2.3743 17 16 11.2129 4.0121 2.6773 18 6 10.7609 5.6315 3.2045 19 1 9.7190 5.9112 3.2568 20 6 11.7437 6.5473 3.5535 21 7 13.0135 6.2063 3.4902 22 14 11.2644 8.2640 4.1130 23 1 9.7853 8.3947 4.0974 24 1 11.7666 8.4935 5.4914 25 1 11.8603 9.2681 3.1954 26 6 4.5510 -0.7775 0.8504 27 7 3.2351 -0.7786 0.8509 28 1 2.7262 1.4479 -1.5820 29 1 7.1201 0.6081 -0.6602 30 1 7.9794 -2.8774 1.0276 31 1 6.5297 -2.6036 0.0318 32 1 8.4661 -3.0051 -1.3075 33 1 9.2655 -0.8108 1.9136 34 1 9.3338 -0.2430 0.2280 35 1 7.7349 1.5539 1.7085 36 1 9.0616 3.8980 1.6112 37 1 8.9920 3.3308 3.2970 38 1 13.7003 6.8462 3.7345 39 1 5.0915 -1.4089 1.5401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121078854.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:00 Heat of formation + Delta-G solvation = -26.626882 kcal Electronic energy + Delta-G solvation = -24947.565076 eV Core-core repulsion = 21016.024669 eV Total energy + Delta-G solvation = -3931.540408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.24830 -40.72610 -39.14042 -37.72791 -36.68663 -35.65840 -34.95739 -34.57728 -32.50882 -31.02963 -29.99877 -27.70448 -26.59343 -25.77109 -25.42242 -22.22278 -21.74394 -20.65553 -19.90038 -19.35777 -18.77835 -18.05837 -17.78697 -17.34186 -16.87631 -16.60713 -16.44035 -16.21125 -16.02317 -15.58969 -15.43683 -15.18488 -14.85291 -14.65219 -14.48363 -14.33796 -14.14436 -14.00701 -13.74008 -13.29109 -13.16177 -13.14900 -12.91129 -12.67358 -12.61204 -12.51050 -12.28608 -11.70969 -11.37729 -11.15492 -10.95956 -10.85207 -10.28167 -10.26218 -10.13140 -9.02964 -8.65161 -8.34558 -6.11772 -0.47957 0.06915 1.27778 1.41448 1.46211 1.47460 1.57951 1.62117 1.72017 1.81474 2.25132 2.29705 2.53745 2.83193 2.99813 3.25647 3.29312 3.32457 3.42357 3.56856 3.66609 3.92521 4.00104 4.06546 4.27462 4.32821 4.50503 4.52722 4.60151 4.62171 4.65566 4.90671 5.02932 5.38009 5.42852 5.55833 6.16117 6.20453 6.22927 6.43727 6.45514 6.76119 6.95077 7.07377 7.23886 8.74697 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012054 B = 0.002310 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.247307 B =12117.406340 C =14063.973826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.301 3.699 3 C 0.035 3.965 4 C 0.184 3.816 5 N -0.522 5.522 6 C 0.388 3.612 7 N -0.681 5.681 8 C 0.143 3.857 9 H 0.139 0.861 10 C 0.060 3.940 11 O -0.589 6.589 12 C 0.118 3.882 13 N -0.713 5.713 14 C 0.537 3.463 15 O -0.562 6.562 16 C -0.132 4.132 17 S -0.149 6.149 18 C -0.545 4.545 19 H 0.081 0.919 20 C 0.013 3.987 21 N -0.910 5.910 22 Si 0.997 3.003 23 H -0.258 1.258 24 H -0.274 1.274 25 H -0.275 1.275 26 C 0.007 3.993 27 N -0.384 5.384 28 H 0.203 0.797 29 H 0.413 0.587 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.398 0.602 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.413 0.587 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.271 0.729 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.244 -18.886 -7.729 27.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.016 4.016 3 C -0.104 4.104 4 C 0.019 3.981 5 N -0.244 5.244 6 C 0.145 3.855 7 N -0.310 5.310 8 C 0.038 3.962 9 H 0.157 0.843 10 C -0.019 4.019 11 O -0.398 6.398 12 C -0.006 4.006 13 N -0.367 5.367 14 C 0.322 3.678 15 O -0.439 6.439 16 C -0.283 4.283 17 S 0.078 5.922 18 C -0.693 4.693 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.200 1.200 26 C -0.167 4.167 27 N -0.098 5.098 28 H 0.220 0.780 29 H 0.251 0.749 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.249 0.751 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.250 0.750 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -17.880 -19.179 -7.630 27.308 hybrid contribution -0.827 1.400 0.060 1.627 sum -18.707 -17.780 -7.570 26.896 Atomic orbital electron populations 1.81295 1.12642 1.09255 1.09028 1.24827 0.91400 0.92646 0.92679 1.16882 0.86342 1.04584 1.02610 1.23777 0.88579 0.92294 0.93424 1.68209 1.08784 1.23356 1.24073 1.19784 0.86859 0.89302 0.89566 1.44751 1.00843 1.45450 1.39932 1.21799 0.91369 0.89508 0.93531 0.84321 1.22727 0.95800 0.94836 0.88532 1.86471 1.72462 1.38022 1.42811 1.21585 0.96664 0.81423 1.00948 1.45685 1.08582 1.13886 1.68590 1.19950 0.84443 0.86998 0.76382 1.90709 1.27560 1.72562 1.53118 1.23382 1.03542 0.95947 1.05419 1.85549 1.06342 1.13144 1.87161 1.23226 0.96041 0.98293 1.51702 0.90038 1.26104 0.94307 1.03832 0.94932 1.70181 1.00756 1.37213 1.46540 0.84927 0.78979 0.76309 0.77873 1.18123 1.19949 1.20006 1.23581 0.88923 1.02592 1.01654 1.68060 1.09223 1.15369 1.17192 0.78023 0.74948 0.89535 0.91224 0.75149 0.89267 0.91295 0.75007 0.87546 0.87270 0.92012 0.77866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.79 18.54 19.01 0.35 -9.44 16 2 C 0.30 5.22 15.56 88.33 1.37 6.60 16 3 C 0.04 0.48 6.59 40.49 0.27 0.75 16 4 C 0.18 1.98 10.92 84.99 0.93 2.91 16 5 N -0.52 -6.81 10.52 -191.65 -2.02 -8.83 16 6 C 0.39 3.97 7.64 133.23 1.02 4.99 16 7 N -0.68 -5.92 4.62 -324.13 -1.50 -7.42 16 8 C 0.14 0.84 2.21 44.99 0.10 0.94 16 9 H 0.14 0.04 6.45 -2.39 -0.02 0.02 16 10 C 0.06 0.22 6.77 71.98 0.49 0.70 16 11 O -0.59 -5.02 12.64 -148.98 -1.88 -6.90 16 12 C 0.12 1.72 5.12 86.38 0.44 2.17 16 13 N -0.71 -13.90 5.39 -463.05 -2.49 -16.39 16 14 C 0.54 17.69 7.85 87.66 0.69 18.37 16 15 O -0.56 -23.99 15.86 -3.00 -0.05 -24.04 16 16 C -0.13 -4.89 6.16 71.24 0.44 -4.45 16 17 S -0.15 -8.03 20.57 -56.49 -1.16 -9.20 16 18 C -0.54 -30.53 9.50 67.95 0.65 -29.88 16 19 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 20 C 0.01 0.73 5.49 84.86 0.47 1.20 16 21 N -0.91 -55.19 13.22 21.65 0.29 -54.90 16 22 Si 1.00 43.09 29.55 68.60 2.03 45.12 16 23 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 26 C 0.01 0.06 9.99 85.08 0.85 0.91 16 27 N -0.38 -5.25 10.41 -187.83 -1.96 -7.20 16 28 H 0.20 1.02 8.06 -2.91 -0.02 0.99 16 29 H 0.41 4.92 8.73 -92.71 -0.81 4.12 16 30 H 0.09 0.01 8.14 -2.39 -0.02 0.00 16 31 H 0.07 0.10 7.78 -2.39 -0.02 0.08 16 32 H 0.40 0.51 9.12 -74.06 -0.68 -0.16 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.37 7.39 -2.39 -0.02 1.35 16 35 H 0.41 5.81 8.14 -92.70 -0.75 5.05 16 36 H 0.11 3.60 8.14 -2.40 -0.02 3.58 16 37 H 0.11 3.62 8.14 -2.39 -0.02 3.61 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.20 0.31 6.18 -2.91 -0.02 0.29 16 Total: -1.00 -84.66 366.96 -1.77 -86.43 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -1.08 Total: 7.57 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 7.70 Total: 5.20 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -7.32 Total: -104.18 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -1.93 Total: -30.94 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.20 kcal Total: -84.66 -1.77 -86.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121078854.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.799 kcal (2) G-P(sol) polarization free energy of solvation -84.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds