Wall clock time and date at job start Tue Mar 31 2020 19:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 N 1.31031 * 119.06705 * 80.55738 * 3 2 1 5 5 C 1.35162 * 120.54720 * 179.97438 * 4 3 2 6 6 N 1.31904 * 120.57009 * 180.02562 * 5 4 3 7 7 C 1.46505 * 120.00038 * 0.02562 * 6 5 4 8 8 H 1.09003 * 109.46919 * 359.97438 * 7 6 5 9 9 C 1.52995 * 109.47161 * 119.99795 * 7 6 5 10 10 O 1.42898 * 109.47333 * 64.99838 * 9 7 6 11 11 C 1.53001 * 109.46965 * 239.99724 * 7 6 5 12 12 N 1.46501 * 109.47123 * 54.99737 * 11 7 6 13 13 C 1.34779 * 120.00225 * 179.97438 * 12 11 7 14 14 O 1.21278 * 119.99562 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99811 * 179.97438 * 13 12 11 16 16 S 1.81009 * 109.46844 * 180.02562 * 15 13 12 17 17 C 1.76197 * 100.00095 * 180.02562 * 16 15 13 18 18 H 1.08008 * 119.99838 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00001 * 179.97438 * 17 16 15 20 20 N 1.31623 * 119.99954 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99715 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46959 * 60.00565 * 21 19 17 23 23 H 1.48505 * 109.46950 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47386 * 300.00138 * 21 19 17 25 25 C 1.46886 * 118.85762 * 359.97438 * 5 4 3 26 26 C 1.34952 * 118.30237 * 0.02562 * 25 5 4 27 27 N 1.36219 * 119.06397 * 260.28334 * 3 2 1 28 28 H 0.97000 * 119.43560 * 0.02562 * 27 3 2 29 29 H 1.09001 * 109.47070 * 185.00075 * 9 7 6 30 30 H 1.09004 * 109.47196 * 304.99764 * 9 7 6 31 31 H 0.96700 * 114.00079 * 179.97438 * 10 9 7 32 32 H 1.08998 * 109.47457 * 174.99912 * 11 7 6 33 33 H 1.08999 * 109.47349 * 295.00112 * 11 7 6 34 34 H 0.97008 * 120.00267 * 0.02562 * 12 11 7 35 35 H 1.09003 * 109.47586 * 299.99979 * 15 13 12 36 36 H 1.08999 * 109.47341 * 60.00779 * 15 13 12 37 37 H 0.96999 * 119.99968 * 180.02562 * 20 19 17 38 38 H 1.07998 * 120.84518 * 180.02562 * 25 5 4 39 39 H 1.08009 * 120.35060 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2047 -0.1870 -1.1298 5 6 4.5558 -0.1916 -1.1643 6 7 5.1972 -0.3799 -2.3014 7 6 4.4447 -0.5859 -3.5414 8 1 3.3763 -0.5514 -3.3281 9 6 4.8010 0.5144 -4.5430 10 8 6.1766 0.3960 -4.9114 11 6 4.8022 -1.9503 -4.1342 12 7 4.5730 -2.9936 -3.1316 13 6 4.8209 -4.2837 -3.4326 14 8 5.2342 -4.5809 -4.5334 15 6 4.5856 -5.3567 -2.4010 16 16 5.0084 -6.9710 -3.1023 17 6 4.6485 -8.0074 -1.7235 18 1 4.2830 -7.5749 -0.8037 19 6 4.8346 -9.3795 -1.8194 20 7 5.2805 -9.9064 -2.9401 21 14 4.4537 -10.4781 -0.3574 22 1 3.0218 -10.3351 0.0094 23 1 4.7350 -11.8920 -0.7141 24 1 5.3020 -10.0806 0.7948 25 6 5.2976 0.0179 0.0861 26 6 4.5953 0.2066 1.2228 27 7 3.2296 0.2019 1.1736 28 1 2.7227 0.3409 1.9888 29 1 4.1770 0.4134 -5.4310 30 1 4.6295 1.4898 -4.0875 31 1 6.4726 1.0630 -5.5459 32 1 4.1783 -2.1420 -5.0072 33 1 5.8514 -1.9546 -4.4295 34 1 4.2420 -2.7560 -2.2512 35 1 5.2102 -5.1652 -1.5284 36 1 3.5366 -5.3524 -2.1049 37 1 5.4102 -10.8653 -3.0073 38 1 6.3776 0.0208 0.0954 39 1 5.1071 0.3640 2.1608 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121079087.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:56 Heat of formation + Delta-G solvation = 27.483301 kcal Electronic energy + Delta-G solvation = -25353.443630 eV Core-core repulsion = 21424.249616 eV Total energy + Delta-G solvation = -3929.194014 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.46670 -39.12183 -37.79396 -37.34754 -36.07999 -34.51713 -33.49616 -32.37675 -32.14957 -29.88826 -28.73561 -26.27016 -25.57463 -25.07636 -23.93978 -21.04346 -20.34328 -20.09406 -18.76960 -18.15252 -17.80257 -17.61663 -16.44071 -16.20649 -16.02504 -15.48112 -14.92234 -14.75980 -14.71791 -14.41785 -14.21207 -14.02394 -13.87758 -13.83037 -13.64502 -13.54869 -12.99340 -12.75183 -12.49830 -12.41561 -11.89781 -11.55200 -11.44522 -11.00362 -10.98830 -10.84653 -10.74496 -10.67760 -10.13529 -9.76117 -9.46600 -9.22579 -9.00962 -8.61511 -8.15331 -8.05133 -6.42235 -6.15789 -3.85471 -0.05007 0.86635 1.37062 1.90705 2.21637 2.93775 3.14834 3.24061 3.26109 3.29474 3.30800 3.37660 3.69155 3.88747 3.99193 4.25645 4.25971 4.47930 4.62728 4.85419 5.03180 5.16192 5.18776 5.21100 5.26575 5.46016 5.48878 5.57894 5.75977 5.86237 5.94884 6.01603 6.20664 6.22806 6.30323 6.43178 6.83645 7.16498 7.53370 7.64167 7.69102 7.91134 8.40393 8.80736 9.28882 10.91669 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009920 B = 0.002931 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.964821 B = 9552.216124 C =11339.174006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.329 5.329 2 C 0.251 3.749 3 C 0.501 3.499 4 N -0.521 5.521 5 C 0.332 3.668 6 N -0.488 5.488 7 C 0.060 3.940 8 H 0.086 0.914 9 C 0.097 3.903 10 O -0.555 6.555 11 C 0.140 3.860 12 N -0.732 5.732 13 C 0.531 3.469 14 O -0.519 6.519 15 C -0.151 4.151 16 S -0.058 6.058 17 C -0.536 4.536 18 H 0.071 0.929 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.275 1.275 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.175 4.175 26 C 0.108 3.892 27 N -0.622 5.622 28 H 0.424 0.576 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.373 0.627 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.391 0.609 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.268 0.732 38 H 0.162 0.838 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 29.225 10.874 31.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.007 5.007 2 C -0.069 4.069 3 C 0.222 3.778 4 N -0.249 5.249 5 C 0.055 3.945 6 N -0.208 5.208 7 C -0.052 4.052 8 H 0.104 0.896 9 C 0.018 3.982 10 O -0.359 6.359 11 C 0.015 3.985 12 N -0.386 5.386 13 C 0.317 3.683 14 O -0.394 6.394 15 C -0.302 4.302 16 S 0.169 5.831 17 C -0.684 4.684 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.205 4.205 26 C -0.016 4.016 27 N -0.245 5.245 28 H 0.261 0.739 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.219 0.781 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.224 0.776 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.179 0.821 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.146 27.809 7.849 29.191 hybrid contribution -1.106 0.429 3.315 3.521 sum -5.253 28.238 11.164 30.816 Atomic orbital electron populations 1.81376 1.10750 1.04346 1.04265 1.24356 0.90704 0.96077 0.95803 1.16622 0.85293 0.92279 0.83565 1.69289 1.12006 1.21225 1.22401 1.21296 0.83707 0.95240 0.94234 1.73711 1.32685 1.17584 0.96832 1.21942 0.98090 0.94780 0.90352 0.89648 1.22026 0.83508 0.96664 0.96033 1.86643 1.25648 1.57489 1.66104 1.21183 1.02876 0.83845 0.90571 1.45889 1.69579 1.06414 1.16705 1.20226 0.76800 0.82529 0.88773 1.90690 1.43757 1.81738 1.23180 1.23511 1.04585 1.01043 1.01047 1.85392 1.86280 0.91398 1.20058 1.22839 1.51407 0.94061 1.00095 0.91106 1.24980 0.94719 0.97080 0.96776 1.70011 1.42578 1.12532 1.25175 0.86239 0.78854 0.78929 0.81546 1.20006 1.20805 1.19969 1.22284 1.01900 1.06849 0.89460 1.21906 0.80708 0.98213 1.00750 1.41954 1.07145 1.65376 1.09976 0.73883 0.92915 0.93845 0.78059 0.91528 0.89931 0.77557 0.89486 0.89611 0.92167 0.82072 0.80073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.33 -2.80 18.54 41.83 0.78 -2.03 16 2 C 0.25 1.61 15.62 -22.47 -0.35 1.26 16 3 C 0.50 2.84 7.48 -157.24 -1.18 1.66 16 4 N -0.52 -4.65 8.73 -10.41 -0.09 -4.74 16 5 C 0.33 3.28 7.27 -155.90 -1.13 2.14 16 6 N -0.49 -6.16 9.66 -52.71 -0.51 -6.67 16 7 C 0.06 0.75 2.88 -67.93 -0.20 0.55 16 8 H 0.09 1.04 6.70 -51.93 -0.35 0.69 16 9 C 0.10 1.00 6.88 37.16 0.26 1.26 16 10 O -0.55 -6.33 12.64 -35.23 -0.45 -6.77 16 11 C 0.14 2.19 5.25 -4.04 -0.02 2.17 16 12 N -0.73 -12.47 5.39 -60.30 -0.32 -12.79 16 13 C 0.53 11.37 7.85 -10.99 -0.09 11.29 16 14 O -0.52 -13.11 15.86 5.56 0.09 -13.02 16 15 C -0.15 -3.36 6.16 36.00 0.22 -3.13 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 17 C -0.54 -15.77 9.50 30.94 0.29 -15.48 16 18 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 19 C 0.07 2.16 5.49 -17.43 -0.10 2.06 16 20 N -0.87 -26.81 13.22 55.49 0.73 -26.08 16 21 Si 0.92 21.81 29.55 -169.99 -5.02 16.79 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 C -0.18 -1.07 10.30 -37.25 -0.38 -1.45 16 26 C 0.11 0.22 11.28 -16.57 -0.19 0.03 16 27 N -0.62 -1.20 5.31 -12.03 -0.06 -1.27 16 28 H 0.42 -0.65 8.73 -40.82 -0.36 -1.01 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.37 2.41 9.12 45.56 0.42 2.83 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.49 7.39 -51.93 -0.38 1.11 16 34 H 0.39 5.94 7.84 -40.82 -0.32 5.62 16 35 H 0.09 1.80 8.14 -51.91 -0.42 1.38 16 36 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 37 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 38 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.18 -0.37 8.06 -52.48 -0.42 -0.79 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -41.52 369.47 -7.86 -49.37 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -3.50 Total: 3.15 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -2.86 Total: 2.37 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.52 Total: -53.58 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.36 Total: -19.80 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -41.52 -7.86 -49.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121079087.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.858 kcal (2) G-P(sol) polarization free energy of solvation -41.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds