Wall clock time and date at job start Tue Mar 31 2020 19:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 N 1.31031 * 119.06705 * 80.55738 * 3 2 1 5 5 C 1.35162 * 120.54720 * 179.97438 * 4 3 2 6 6 N 1.31904 * 120.57009 * 180.02562 * 5 4 3 7 7 C 1.46505 * 120.00038 * 0.02562 * 6 5 4 8 8 H 1.09003 * 109.46919 * 359.97438 * 7 6 5 9 9 C 1.52995 * 109.47161 * 119.99795 * 7 6 5 10 10 O 1.42898 * 109.47333 * 64.99838 * 9 7 6 11 11 C 1.53001 * 109.46965 * 239.99724 * 7 6 5 12 12 N 1.46501 * 109.47123 * 54.99737 * 11 7 6 13 13 C 1.34779 * 120.00225 * 179.97438 * 12 11 7 14 14 O 1.21278 * 119.99562 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99811 * 179.97438 * 13 12 11 16 16 S 1.81009 * 109.46844 * 180.02562 * 15 13 12 17 17 C 1.76197 * 100.00095 * 180.02562 * 16 15 13 18 18 H 1.08008 * 119.99838 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00001 * 179.97438 * 17 16 15 20 20 N 1.31623 * 119.99954 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99715 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46959 * 60.00565 * 21 19 17 23 23 H 1.48505 * 109.46950 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47386 * 300.00138 * 21 19 17 25 25 C 1.46886 * 118.85762 * 359.97438 * 5 4 3 26 26 C 1.34952 * 118.30237 * 0.02562 * 25 5 4 27 27 N 1.36219 * 119.06397 * 260.28334 * 3 2 1 28 28 H 0.97000 * 119.43560 * 0.02562 * 27 3 2 29 29 H 1.09001 * 109.47070 * 185.00075 * 9 7 6 30 30 H 1.09004 * 109.47196 * 304.99764 * 9 7 6 31 31 H 0.96700 * 114.00079 * 179.97438 * 10 9 7 32 32 H 1.08998 * 109.47457 * 174.99912 * 11 7 6 33 33 H 1.08999 * 109.47349 * 295.00112 * 11 7 6 34 34 H 0.97008 * 120.00267 * 0.02562 * 12 11 7 35 35 H 1.09003 * 109.47586 * 299.99979 * 15 13 12 36 36 H 1.08999 * 109.47341 * 60.00779 * 15 13 12 37 37 H 0.96999 * 119.99968 * 180.02562 * 20 19 17 38 38 H 1.07998 * 120.84518 * 180.02562 * 25 5 4 39 39 H 1.08009 * 120.35060 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2047 -0.1870 -1.1298 5 6 4.5558 -0.1916 -1.1643 6 7 5.1972 -0.3799 -2.3014 7 6 4.4447 -0.5859 -3.5414 8 1 3.3763 -0.5514 -3.3281 9 6 4.8010 0.5144 -4.5430 10 8 6.1766 0.3960 -4.9114 11 6 4.8022 -1.9503 -4.1342 12 7 4.5730 -2.9936 -3.1316 13 6 4.8209 -4.2837 -3.4326 14 8 5.2342 -4.5809 -4.5334 15 6 4.5856 -5.3567 -2.4010 16 16 5.0084 -6.9710 -3.1023 17 6 4.6485 -8.0074 -1.7235 18 1 4.2830 -7.5749 -0.8037 19 6 4.8346 -9.3795 -1.8194 20 7 5.2805 -9.9064 -2.9401 21 14 4.4537 -10.4781 -0.3574 22 1 3.0218 -10.3351 0.0094 23 1 4.7350 -11.8920 -0.7141 24 1 5.3020 -10.0806 0.7948 25 6 5.2976 0.0179 0.0861 26 6 4.5953 0.2066 1.2228 27 7 3.2296 0.2019 1.1736 28 1 2.7227 0.3409 1.9888 29 1 4.1770 0.4134 -5.4310 30 1 4.6295 1.4898 -4.0875 31 1 6.4726 1.0630 -5.5459 32 1 4.1783 -2.1420 -5.0072 33 1 5.8514 -1.9546 -4.4295 34 1 4.2420 -2.7560 -2.2512 35 1 5.2102 -5.1652 -1.5284 36 1 3.5366 -5.3524 -2.1049 37 1 5.4102 -10.8653 -3.0073 38 1 6.3776 0.0208 0.0954 39 1 5.1071 0.3640 2.1608 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121079087.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:55 Heat of formation + Delta-G solvation = -8.159952 kcal Electronic energy + Delta-G solvation = -25354.989237 eV Core-core repulsion = 21424.249616 eV Total energy + Delta-G solvation = -3930.739622 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.96122 -40.68905 -38.73211 -37.97894 -36.78961 -35.67709 -34.59269 -34.17270 -33.04922 -31.17457 -29.85404 -27.71403 -26.78337 -26.35118 -24.51123 -21.84397 -21.69858 -20.92191 -19.84524 -19.23345 -18.70483 -18.49395 -17.85453 -17.36401 -16.88778 -16.82454 -16.60431 -16.35681 -15.81911 -15.41503 -15.21199 -14.85301 -14.69975 -14.56292 -14.45078 -14.44053 -14.38752 -14.25291 -13.82502 -13.33203 -13.18183 -13.02810 -12.86028 -12.80801 -12.64350 -12.20023 -11.75676 -11.37665 -11.23036 -11.13216 -11.01960 -10.90527 -10.30578 -10.26877 -10.02471 -8.69053 -8.62486 -8.34453 -6.14034 -0.58553 0.47701 0.88855 1.24349 1.37438 1.44369 1.45446 1.55708 1.56862 1.67447 2.24885 2.27663 2.52270 2.69187 2.99276 3.16167 3.30527 3.49218 3.61780 3.86067 3.93775 4.07092 4.20198 4.21644 4.26286 4.41512 4.43969 4.51989 4.69133 4.71390 4.83765 5.08829 5.13525 5.39059 5.40292 5.49099 5.81349 6.08554 6.19068 6.40815 6.66036 6.95363 7.05670 7.07100 7.17241 8.74901 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009920 B = 0.002931 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.964821 B = 9552.216124 C =11339.174006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C 0.275 3.725 3 C 0.511 3.489 4 N -0.559 5.559 5 C 0.340 3.660 6 N -0.551 5.551 7 C 0.071 3.929 8 H 0.084 0.916 9 C 0.099 3.901 10 O -0.579 6.579 11 C 0.142 3.858 12 N -0.707 5.707 13 C 0.530 3.470 14 O -0.565 6.565 15 C -0.125 4.125 16 S -0.147 6.147 17 C -0.549 4.549 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 1.002 2.998 22 H -0.261 1.261 23 H -0.278 1.278 24 H -0.260 1.260 25 C -0.218 4.218 26 C 0.157 3.843 27 N -0.594 5.594 28 H 0.447 0.553 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.391 0.609 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.403 0.597 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.272 0.728 38 H 0.163 0.837 39 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.926 30.692 15.280 34.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.041 5.041 2 C -0.046 4.046 3 C 0.233 3.767 4 N -0.289 5.289 5 C 0.066 3.934 6 N -0.274 5.274 7 C -0.041 4.041 8 H 0.102 0.898 9 C 0.020 3.980 10 O -0.386 6.386 11 C 0.018 3.982 12 N -0.359 5.359 13 C 0.316 3.684 14 O -0.444 6.444 15 C -0.276 4.276 16 S 0.080 5.920 17 C -0.697 4.697 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.823 3.177 22 H -0.186 1.186 23 H -0.203 1.203 24 H -0.184 1.184 25 C -0.248 4.248 26 C 0.032 3.968 27 N -0.216 5.216 28 H 0.289 0.711 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.240 0.760 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.239 0.761 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.081 0.919 38 H 0.181 0.819 39 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -5.186 29.356 12.341 32.264 hybrid contribution -0.881 0.172 2.158 2.337 sum -6.067 29.527 14.499 33.450 Atomic orbital electron populations 1.81415 1.11799 1.05415 1.05456 1.24315 0.90582 0.95007 0.94673 1.16507 0.84829 0.91172 0.84166 1.69214 1.12080 1.23461 1.24181 1.21787 0.84241 0.92572 0.94774 1.73747 1.32864 1.23560 0.97248 1.21728 0.97964 0.92794 0.91601 0.89804 1.22056 0.83233 0.96501 0.96220 1.86595 1.26353 1.58739 1.66950 1.21221 1.01012 0.85577 0.90365 1.45669 1.67562 1.05144 1.17525 1.20148 0.76639 0.83697 0.87917 1.90674 1.46252 1.82579 1.24883 1.23318 1.05950 0.97180 1.01145 1.85610 1.87147 0.96465 1.22774 1.23175 1.51783 0.94636 1.00098 0.89891 1.26176 0.93988 0.98740 1.00241 1.70185 1.43673 1.13076 1.27886 0.84964 0.79304 0.76291 0.77166 1.18604 1.20290 1.18417 1.22363 1.02396 1.10749 0.89301 1.22713 0.79950 0.92723 1.01391 1.42129 1.07626 1.62098 1.09762 0.71134 0.91735 0.92831 0.75966 0.92137 0.92699 0.76139 0.87586 0.87584 0.91917 0.81937 0.74491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.36 -5.61 18.54 19.00 0.35 -5.26 16 2 C 0.27 2.92 15.62 88.33 1.38 4.30 16 3 C 0.51 4.32 7.48 135.43 1.01 5.33 16 4 N -0.56 -9.14 8.73 -186.86 -1.63 -10.77 16 5 C 0.34 6.35 7.27 136.53 0.99 7.34 16 6 N -0.55 -14.06 9.66 -320.68 -3.10 -17.15 16 7 C 0.07 1.83 2.88 44.99 0.13 1.96 16 8 H 0.08 2.09 6.70 -2.39 -0.02 2.07 16 9 C 0.10 2.10 6.88 71.98 0.50 2.59 16 10 O -0.58 -13.75 12.64 -148.98 -1.88 -15.63 16 11 C 0.14 4.68 5.25 86.38 0.45 5.13 16 12 N -0.71 -24.46 5.39 -463.06 -2.49 -26.96 16 13 C 0.53 23.24 7.85 87.66 0.69 23.93 16 14 O -0.57 -29.89 15.86 -3.02 -0.05 -29.94 16 15 C -0.12 -5.53 6.16 71.23 0.44 -5.10 16 16 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 17 C -0.55 -32.39 9.50 67.95 0.65 -31.74 16 18 H 0.08 4.51 7.80 -2.91 -0.02 4.49 16 19 C 0.01 0.77 5.49 84.86 0.47 1.24 16 20 N -0.91 -57.36 13.22 21.65 0.29 -57.07 16 21 Si 1.00 44.13 29.55 68.60 2.03 46.16 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 25 C -0.22 -2.07 10.30 23.78 0.24 -1.82 16 26 C 0.16 -0.18 11.28 83.19 0.94 0.76 16 27 N -0.59 0.56 5.31 -191.99 -1.02 -0.46 16 28 H 0.45 -3.91 8.73 -92.71 -0.81 -4.72 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.39 5.27 9.12 -74.06 -0.68 4.59 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.05 2.12 7.39 -2.39 -0.02 2.10 16 34 H 0.40 12.10 7.84 -92.70 -0.73 11.38 16 35 H 0.11 4.29 8.14 -2.39 -0.02 4.27 16 36 H 0.11 4.26 8.14 -2.40 -0.02 4.24 16 37 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 38 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 39 H 0.24 -2.78 8.06 -2.91 -0.02 -2.81 16 Total: -1.00 -96.31 369.47 -1.85 -98.16 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -1.06 Total: 14.84 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 7.89 Total: 13.91 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -7.60 Total: -117.68 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -1.93 Total: -45.58 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -96.31 -1.85 -98.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121079087.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.996 kcal (2) G-P(sol) polarization free energy of solvation -96.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds