Wall clock time and date at job start Tue Mar 31 2020 19:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 N 1.33032 * 120.17364 * 177.83233 * 3 2 1 5 5 C 1.31846 * 119.98844 * 180.27586 * 4 3 2 6 6 C 1.38637 * 120.35192 * 359.73046 * 5 4 3 7 7 N 1.32118 * 120.35415 * 359.97438 * 6 5 4 8 8 C 1.32732 * 119.99836 * 0.02562 * 7 6 5 9 9 N 1.38408 * 120.16935 * 179.97438 * 8 7 6 10 10 C 1.46497 * 120.00250 * 0.02562 * 9 8 7 11 11 H 1.08991 * 109.47169 * 325.00009 * 10 9 8 12 12 C 1.52999 * 109.47084 * 84.99687 * 10 9 8 13 13 O 1.42903 * 109.47256 * 65.00345 * 12 10 9 14 14 C 1.53002 * 109.46869 * 204.99698 * 10 9 8 15 15 N 1.46501 * 109.47048 * 55.00287 * 14 10 9 16 16 C 1.34771 * 119.99616 * 179.97438 * 15 14 10 17 17 O 1.21281 * 120.00412 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99918 * 179.97438 * 16 15 14 19 19 S 1.80994 * 109.47399 * 179.97438 * 18 16 15 20 20 C 1.76201 * 100.00247 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99681 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00294 * 180.02562 * 20 19 18 23 23 N 1.31634 * 120.00024 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00352 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46974 * 59.99406 * 24 22 20 26 26 H 1.48499 * 109.47686 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47219 * 300.00216 * 24 22 20 28 28 H 1.07996 * 119.81987 * 179.75585 * 5 4 3 29 29 H 1.07998 * 119.82288 * 180.02562 * 6 5 4 30 30 H 0.97004 * 119.99440 * 180.02562 * 9 8 7 31 31 H 1.08997 * 109.47286 * 304.99906 * 12 10 9 32 32 H 1.09008 * 109.47201 * 184.99686 * 12 10 9 33 33 H 0.96700 * 114.00311 * 180.02562 * 13 12 10 34 34 H 1.09001 * 109.46784 * 175.00065 * 14 10 9 35 35 H 1.08997 * 109.47101 * 294.99872 * 14 10 9 36 36 H 0.96996 * 119.99912 * 359.97438 * 15 14 10 37 37 H 1.08996 * 109.47232 * 300.00478 * 18 16 15 38 38 H 1.09006 * 109.46865 * 60.00035 * 18 16 15 39 39 H 0.96996 * 120.00322 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2361 1.1502 -0.0435 5 6 4.5545 1.1463 -0.0488 6 6 5.2518 -0.0511 -0.0037 7 7 4.6021 -1.2005 0.0457 8 6 3.2749 -1.2129 0.0517 9 7 2.5908 -2.4150 0.1028 10 6 3.3315 -3.6780 0.1510 11 1 4.2392 -3.5898 -0.4459 12 6 3.7033 -3.9962 1.6006 13 8 2.5136 -4.2266 2.3580 14 6 2.4591 -4.8026 -0.4104 15 7 2.0048 -4.4428 -1.7559 16 6 1.2183 -5.2888 -2.4502 17 8 0.8871 -6.3482 -1.9613 18 6 0.7504 -4.9186 -3.8341 19 16 -0.2802 -6.2496 -4.4988 20 6 -0.6759 -5.5716 -6.0763 21 1 -0.2930 -4.6020 -6.3587 22 6 -1.4796 -6.2834 -6.9560 23 7 -1.9459 -7.4654 -6.6119 24 14 -1.8996 -5.5643 -8.6280 25 1 -0.6493 -5.3296 -9.3941 26 1 -2.7648 -6.5144 -9.3724 27 1 -2.6181 -4.2773 -8.4470 28 1 5.0942 2.0810 -0.0882 29 1 6.3317 -0.0443 -0.0080 30 1 1.6207 -2.4211 0.1067 31 1 4.2494 -3.1555 2.0286 32 1 4.3296 -4.8879 1.6277 33 1 2.6738 -4.4342 3.2887 34 1 3.0397 -5.7239 -0.4572 35 1 1.5951 -4.9501 0.2375 36 1 2.2700 -3.5957 -2.1470 37 1 0.1694 -3.9976 -3.7869 38 1 1.6143 -4.7703 -4.4821 39 1 -2.5072 -7.9631 -7.2268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121079855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:28 Heat of formation + Delta-G solvation = 4.680953 kcal Electronic energy + Delta-G solvation = -25435.255691 eV Core-core repulsion = 21505.072893 eV Total energy + Delta-G solvation = -3930.182798 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.71866 -39.53203 -38.25266 -37.01401 -36.26128 -34.77975 -34.02795 -32.42843 -31.93382 -29.85290 -28.91711 -26.22079 -25.76125 -25.32288 -24.19702 -21.55265 -20.42663 -20.02141 -18.96620 -18.35649 -17.81964 -17.56497 -16.52844 -16.34820 -15.93397 -15.70094 -15.37339 -14.93922 -14.79993 -14.70536 -14.48799 -14.22476 -13.80954 -13.61410 -13.40450 -13.24072 -13.07868 -12.99184 -12.77635 -12.56501 -12.22589 -11.94352 -11.76595 -11.60999 -11.04772 -11.03390 -10.82489 -10.75082 -10.48386 -9.83108 -9.75982 -9.46837 -9.06979 -8.98560 -8.51841 -8.25238 -6.50478 -6.21498 -3.92368 -0.02634 0.69301 2.14067 2.28998 2.47420 2.97210 3.04493 3.10876 3.24056 3.27420 3.30491 3.39765 3.59155 3.65839 3.80071 3.98207 4.20505 4.24522 4.35542 4.58277 4.62119 4.69916 4.90261 5.00800 5.06186 5.13602 5.18108 5.37134 5.55911 5.64497 5.79909 5.86816 6.11724 6.26404 6.35182 6.48872 6.86939 7.10247 7.19030 7.27762 7.58454 7.60315 8.35096 8.54218 9.23711 10.85902 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012841 B = 0.002601 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.041065 B =10761.952164 C =11973.747919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C 0.260 3.740 3 C 0.070 3.930 4 N -0.364 5.364 5 C -0.013 4.013 6 C 0.141 3.859 7 N -0.496 5.496 8 C 0.407 3.593 9 N -0.688 5.688 10 C 0.144 3.856 11 H 0.115 0.885 12 C 0.068 3.932 13 O -0.567 6.567 14 C 0.114 3.886 15 N -0.742 5.742 16 C 0.533 3.467 17 O -0.513 6.513 18 C -0.154 4.154 19 S -0.058 6.058 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.274 1.274 28 H 0.178 0.822 29 H 0.180 0.820 30 H 0.419 0.581 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.382 0.618 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.397 0.603 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.368 15.229 18.397 31.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.055 5.055 2 C -0.057 4.057 3 C -0.078 4.078 4 N -0.079 5.079 5 C -0.179 4.179 6 C -0.024 4.024 7 N -0.219 5.219 8 C 0.164 3.836 9 N -0.318 5.318 10 C 0.039 3.961 11 H 0.133 0.867 12 C -0.012 4.012 13 O -0.373 6.373 14 C -0.011 4.011 15 N -0.397 5.397 16 C 0.319 3.681 17 O -0.387 6.387 18 C -0.305 4.305 19 S 0.169 5.831 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.195 0.805 29 H 0.197 0.803 30 H 0.257 0.743 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.229 0.771 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.231 0.769 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 17.722 13.155 18.596 28.860 hybrid contribution 0.751 2.141 -1.270 2.600 sum 18.472 15.296 17.326 29.587 Atomic orbital electron populations 1.81358 1.11095 1.05337 1.07753 1.24708 0.91357 0.95075 0.94574 1.16457 0.87038 0.89550 1.14760 1.68129 1.09803 1.26368 1.03625 1.23463 0.89291 1.00227 1.04888 1.23898 1.01951 0.87525 0.89001 1.68204 1.05169 1.29971 1.18572 1.19015 0.89461 0.86146 0.88934 1.44753 1.09308 1.02009 1.75736 1.21528 0.96575 0.82239 0.95750 0.86715 1.22537 0.87339 1.00158 0.91178 1.86507 1.31581 1.93503 1.25713 1.21525 0.99381 0.96273 0.83914 1.46000 1.53948 1.22799 1.16989 1.20311 0.77205 0.83658 0.86913 1.90714 1.54897 1.23098 1.69966 1.23536 1.04761 1.06974 0.95206 1.85380 1.60322 1.20566 1.16859 1.22826 1.37059 1.07189 1.01417 0.90996 1.24988 0.94966 0.94733 0.98851 1.70005 1.32236 1.11618 1.36439 0.86223 0.78486 0.78831 0.81959 1.19928 1.20781 1.19919 0.80480 0.80265 0.74250 0.92553 0.91934 0.77084 0.89711 0.89676 0.76941 0.89297 0.89217 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -5.17 18.54 41.84 0.78 -4.40 16 2 C 0.26 2.98 14.32 -22.47 -0.32 2.66 16 3 C 0.07 0.65 6.61 -84.55 -0.56 0.09 16 4 N -0.36 -3.09 10.42 -10.74 -0.11 -3.20 16 5 C -0.01 -0.06 11.21 -17.40 -0.19 -0.26 16 6 C 0.14 0.54 11.22 -17.28 -0.19 0.35 16 7 N -0.50 -3.18 9.36 -11.97 -0.11 -3.29 16 8 C 0.41 3.24 7.46 -154.78 -1.15 2.09 16 9 N -0.69 -5.59 4.52 -53.63 -0.24 -5.83 16 10 C 0.14 1.07 2.55 -67.93 -0.17 0.90 16 11 H 0.12 0.76 7.55 -51.93 -0.39 0.37 16 12 C 0.07 0.41 6.86 37.16 0.25 0.66 16 13 O -0.57 -4.17 12.64 -35.23 -0.45 -4.62 16 14 C 0.11 1.21 5.12 -4.04 -0.02 1.19 16 15 N -0.74 -9.52 5.39 -60.29 -0.32 -9.85 16 16 C 0.53 9.86 7.85 -10.99 -0.09 9.77 16 17 O -0.51 -11.55 15.86 5.56 0.09 -11.46 16 18 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 19 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 20 C -0.54 -15.48 9.50 30.94 0.29 -15.18 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 23 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 24 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 28 H 0.18 0.25 8.06 -52.49 -0.42 -0.17 16 29 H 0.18 -0.01 8.06 -52.49 -0.42 -0.43 16 30 H 0.42 3.96 7.45 -40.82 -0.30 3.66 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 33 H 0.38 1.28 9.12 45.56 0.42 1.70 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.08 7.39 -51.93 -0.38 0.69 16 36 H 0.40 4.25 8.14 -40.82 -0.33 3.91 16 37 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 38 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 39 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -38.24 368.31 -6.85 -45.09 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -3.50 Total: 3.43 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.03 Total: 1.39 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.72 Total: -52.24 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.36 Total: -16.08 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.24 -6.85 -45.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121079855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.774 kcal (2) G-P(sol) polarization free energy of solvation -38.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds