Wall clock time and date at job start Tue Mar 31 2020 19:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 N 1.33032 * 120.17364 * 177.83233 * 3 2 1 5 5 C 1.31846 * 119.98844 * 180.27586 * 4 3 2 6 6 C 1.38637 * 120.35192 * 359.73046 * 5 4 3 7 7 N 1.32118 * 120.35415 * 359.97438 * 6 5 4 8 8 C 1.32732 * 119.99836 * 0.02562 * 7 6 5 9 9 N 1.38408 * 120.16935 * 179.97438 * 8 7 6 10 10 C 1.46497 * 120.00250 * 0.02562 * 9 8 7 11 11 H 1.08991 * 109.47169 * 325.00009 * 10 9 8 12 12 C 1.52999 * 109.47084 * 84.99687 * 10 9 8 13 13 O 1.42903 * 109.47256 * 65.00345 * 12 10 9 14 14 C 1.53002 * 109.46869 * 204.99698 * 10 9 8 15 15 N 1.46501 * 109.47048 * 55.00287 * 14 10 9 16 16 C 1.34771 * 119.99616 * 179.97438 * 15 14 10 17 17 O 1.21281 * 120.00412 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99918 * 179.97438 * 16 15 14 19 19 S 1.80994 * 109.47399 * 179.97438 * 18 16 15 20 20 C 1.76201 * 100.00247 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99681 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00294 * 180.02562 * 20 19 18 23 23 N 1.31634 * 120.00024 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00352 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46974 * 59.99406 * 24 22 20 26 26 H 1.48499 * 109.47686 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47219 * 300.00216 * 24 22 20 28 28 H 1.07996 * 119.81987 * 179.75585 * 5 4 3 29 29 H 1.07998 * 119.82288 * 180.02562 * 6 5 4 30 30 H 0.97004 * 119.99440 * 180.02562 * 9 8 7 31 31 H 1.08997 * 109.47286 * 304.99906 * 12 10 9 32 32 H 1.09008 * 109.47201 * 184.99686 * 12 10 9 33 33 H 0.96700 * 114.00311 * 180.02562 * 13 12 10 34 34 H 1.09001 * 109.46784 * 175.00065 * 14 10 9 35 35 H 1.08997 * 109.47101 * 294.99872 * 14 10 9 36 36 H 0.96996 * 119.99912 * 359.97438 * 15 14 10 37 37 H 1.08996 * 109.47232 * 300.00478 * 18 16 15 38 38 H 1.09006 * 109.46865 * 60.00035 * 18 16 15 39 39 H 0.96996 * 120.00322 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2361 1.1502 -0.0435 5 6 4.5545 1.1463 -0.0488 6 6 5.2518 -0.0511 -0.0037 7 7 4.6021 -1.2005 0.0457 8 6 3.2749 -1.2129 0.0517 9 7 2.5908 -2.4150 0.1028 10 6 3.3315 -3.6780 0.1510 11 1 4.2392 -3.5898 -0.4459 12 6 3.7033 -3.9962 1.6006 13 8 2.5136 -4.2266 2.3580 14 6 2.4591 -4.8026 -0.4104 15 7 2.0048 -4.4428 -1.7559 16 6 1.2183 -5.2888 -2.4502 17 8 0.8871 -6.3482 -1.9613 18 6 0.7504 -4.9186 -3.8341 19 16 -0.2802 -6.2496 -4.4988 20 6 -0.6759 -5.5716 -6.0763 21 1 -0.2930 -4.6020 -6.3587 22 6 -1.4796 -6.2834 -6.9560 23 7 -1.9459 -7.4654 -6.6119 24 14 -1.8996 -5.5643 -8.6280 25 1 -0.6493 -5.3296 -9.3941 26 1 -2.7648 -6.5144 -9.3724 27 1 -2.6181 -4.2773 -8.4470 28 1 5.0942 2.0810 -0.0882 29 1 6.3317 -0.0443 -0.0080 30 1 1.6207 -2.4211 0.1067 31 1 4.2494 -3.1555 2.0286 32 1 4.3296 -4.8879 1.6277 33 1 2.6738 -4.4342 3.2887 34 1 3.0397 -5.7239 -0.4572 35 1 1.5951 -4.9501 0.2375 36 1 2.2700 -3.5957 -2.1470 37 1 0.1694 -3.9976 -3.7869 38 1 1.6143 -4.7703 -4.4821 39 1 -2.5072 -7.9631 -7.2268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121079855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:27 Heat of formation + Delta-G solvation = -28.159729 kcal Electronic energy + Delta-G solvation = -25436.679770 eV Core-core repulsion = 21505.072893 eV Total energy + Delta-G solvation = -3931.606877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.22373 -40.78154 -39.07325 -37.86030 -36.83454 -35.70537 -34.74766 -34.61097 -32.76811 -31.01776 -29.77577 -27.73753 -26.78662 -26.36672 -24.75096 -22.20304 -21.81547 -20.64978 -19.95238 -19.41962 -18.87679 -18.11534 -17.84981 -17.41739 -16.90586 -16.68599 -16.52824 -16.22487 -16.02900 -15.65767 -15.25051 -15.05923 -14.90955 -14.70618 -14.42601 -14.38827 -14.23510 -14.01975 -13.81522 -13.39293 -13.32080 -13.20374 -12.89288 -12.73665 -12.66635 -12.38477 -12.31368 -11.77795 -11.35535 -11.15744 -11.03843 -10.93545 -10.32712 -10.26718 -10.17836 -9.06847 -8.70004 -8.37341 -6.15842 -0.53642 0.23599 1.22782 1.33935 1.41574 1.43151 1.52857 1.54311 1.71255 1.77164 2.19827 2.25154 2.46105 2.84488 2.96608 3.15301 3.27794 3.32529 3.47167 3.59440 3.85352 3.88631 4.04356 4.16603 4.21495 4.30398 4.44339 4.49672 4.55029 4.65179 4.66191 4.87860 5.24301 5.30850 5.38452 5.73136 5.79302 6.16616 6.18040 6.36091 6.46131 6.78092 6.89068 7.03686 7.14655 8.71703 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012841 B = 0.002601 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.041065 B =10761.952164 C =11973.747919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.281 3.719 3 C 0.033 3.967 4 N -0.393 5.393 5 C 0.000 4.000 6 C 0.162 3.838 7 N -0.500 5.500 8 C 0.408 3.592 9 N -0.695 5.695 10 C 0.154 3.846 11 H 0.132 0.868 12 C 0.071 3.929 13 O -0.592 6.592 14 C 0.115 3.885 15 N -0.714 5.714 16 C 0.535 3.465 17 O -0.559 6.559 18 C -0.132 4.132 19 S -0.146 6.146 20 C -0.550 4.550 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.998 3.002 25 H -0.260 1.260 26 H -0.277 1.277 27 H -0.265 1.265 28 H 0.215 0.785 29 H 0.229 0.771 30 H 0.410 0.590 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.397 0.603 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.411 0.589 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.966 17.537 18.175 34.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.035 4.035 3 C -0.112 4.112 4 N -0.108 5.108 5 C -0.168 4.168 6 C -0.004 4.004 7 N -0.223 5.223 8 C 0.167 3.833 9 N -0.323 5.323 10 C 0.050 3.950 11 H 0.149 0.851 12 C -0.009 4.009 13 O -0.400 6.400 14 C -0.009 4.009 15 N -0.368 5.368 16 C 0.321 3.679 17 O -0.437 6.437 18 C -0.283 4.283 19 S 0.081 5.919 20 C -0.698 4.698 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.184 1.184 26 H -0.202 1.202 27 H -0.189 1.189 28 H 0.231 0.769 29 H 0.245 0.755 30 H 0.246 0.754 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.247 0.753 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.247 0.753 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 21.325 15.486 18.411 32.149 hybrid contribution -0.084 1.557 -1.065 1.888 sum 21.240 17.043 17.346 32.288 Atomic orbital electron populations 1.81347 1.12733 1.07191 1.10420 1.25213 0.91998 0.93410 0.92857 1.16343 0.85848 0.90579 1.18396 1.68099 1.11744 1.26291 1.04705 1.24222 0.88076 1.02281 1.02256 1.24758 1.03915 0.86264 0.85443 1.68336 1.04013 1.31223 1.18709 1.18934 0.90065 0.85351 0.88909 1.44764 1.08903 1.02467 1.76194 1.21528 0.95879 0.80700 0.96930 0.85073 1.22569 0.87069 1.01320 0.89895 1.86473 1.32679 1.93664 1.27214 1.21631 0.99189 0.98109 0.81938 1.45711 1.51685 1.22100 1.17344 1.19999 0.77771 0.83675 0.86460 1.90702 1.57047 1.25227 1.70741 1.23378 1.04182 1.04185 0.96552 1.85527 1.62858 1.25392 1.18094 1.23170 1.37370 1.07584 1.01628 0.90090 1.26126 0.94534 0.94997 1.03406 1.70169 1.33061 1.13280 1.38155 0.85012 0.78704 0.78106 0.76229 1.18445 1.20200 1.18932 0.76861 0.75478 0.75363 0.91623 0.90136 0.75254 0.89380 0.91725 0.75273 0.87978 0.87070 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -12.79 18.54 19.00 0.35 -12.43 16 2 C 0.28 6.71 14.32 88.33 1.27 7.97 16 3 C 0.03 0.59 6.61 40.77 0.27 0.86 16 4 N -0.39 -5.95 10.42 -187.90 -1.96 -7.90 16 5 C 0.00 0.00 11.21 84.79 0.95 0.95 16 6 C 0.16 0.44 11.22 84.75 0.95 1.39 16 7 N -0.50 -4.55 9.36 -191.80 -1.79 -6.34 16 8 C 0.41 5.77 7.46 133.51 1.00 6.76 16 9 N -0.69 -10.54 4.52 -323.59 -1.46 -12.00 16 10 C 0.15 2.00 2.55 44.99 0.11 2.11 16 11 H 0.13 1.31 7.55 -2.39 -0.02 1.29 16 12 C 0.07 0.70 6.86 71.98 0.49 1.20 16 13 O -0.59 -8.16 12.64 -148.98 -1.88 -10.04 16 14 C 0.12 2.37 5.12 86.38 0.44 2.81 16 15 N -0.71 -17.73 5.39 -463.06 -2.49 -20.23 16 16 C 0.54 19.90 7.85 87.66 0.69 20.59 16 17 O -0.56 -25.95 15.86 -3.03 -0.05 -26.00 16 18 C -0.13 -5.36 6.16 71.24 0.44 -4.93 16 19 S -0.15 -8.24 20.57 -56.49 -1.16 -9.41 16 20 C -0.55 -32.03 9.50 67.95 0.65 -31.38 16 21 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 22 C 0.01 0.83 5.49 84.86 0.47 1.29 16 23 N -0.91 -56.66 13.22 21.65 0.29 -56.38 16 24 Si 1.00 44.35 29.55 68.60 2.03 46.38 16 25 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 26 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 28 H 0.21 -0.53 8.06 -2.91 -0.02 -0.56 16 29 H 0.23 -1.61 8.06 -2.91 -0.02 -1.63 16 30 H 0.41 7.84 7.45 -92.71 -0.69 7.15 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.40 2.26 9.12 -74.06 -0.68 1.58 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 35 H 0.06 1.66 7.39 -2.39 -0.02 1.65 16 36 H 0.41 8.11 8.14 -92.71 -0.75 7.35 16 37 H 0.10 3.88 8.14 -2.40 -0.02 3.86 16 38 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 39 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -88.46 368.31 -1.39 -89.84 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -0.97 Total: 14.89 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 7.72 Total: 9.62 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -7.07 Total: -115.28 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -1.93 Total: -36.04 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.41 kcal Total: -88.46 -1.39 -89.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121079855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.685 kcal (2) G-P(sol) polarization free energy of solvation -88.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds