Wall clock time and date at job start Tue Mar 31 2020 19:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 N 1.33038 * 120.17983 * 319.05333 * 3 2 1 5 5 C 1.31834 * 119.99213 * 180.02562 * 4 3 2 6 6 C 1.38649 * 120.35056 * 0.02562 * 5 4 3 7 7 N 1.32113 * 120.35390 * 359.72575 * 6 5 4 8 8 C 1.32726 * 119.99860 * 0.55105 * 7 6 5 9 9 N 1.38408 * 120.17160 * 179.72659 * 8 7 6 10 10 C 1.46496 * 120.00108 * 359.72465 * 9 8 7 11 11 H 1.09002 * 109.47260 * 34.99967 * 10 9 8 12 12 C 1.52999 * 109.47135 * 275.00110 * 10 9 8 13 13 O 1.42903 * 109.47256 * 295.00379 * 12 10 9 14 14 C 1.53002 * 109.47141 * 155.00212 * 10 9 8 15 15 N 1.46499 * 109.47045 * 304.99657 * 14 10 9 16 16 C 1.34776 * 119.99754 * 179.97438 * 15 14 10 17 17 O 1.21276 * 120.00345 * 0.02562 * 16 15 14 18 18 C 1.50707 * 119.99723 * 180.02562 * 16 15 14 19 19 S 1.81001 * 109.46819 * 180.02562 * 18 16 15 20 20 C 1.76207 * 99.99476 * 179.97438 * 19 18 16 21 21 H 1.07993 * 120.00456 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99431 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00322 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99682 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47045 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47490 * 119.99782 * 24 22 20 27 27 H 1.48503 * 109.47216 * 240.00300 * 24 22 20 28 28 H 1.08005 * 119.82568 * 180.02562 * 5 4 3 29 29 H 1.08006 * 119.82147 * 179.97438 * 6 5 4 30 30 H 0.97000 * 119.99954 * 179.72521 * 9 8 7 31 31 H 1.08997 * 109.47286 * 174.99939 * 12 10 9 32 32 H 1.09008 * 109.47201 * 54.99719 * 12 10 9 33 33 H 0.96700 * 114.00311 * 180.02562 * 13 12 10 34 34 H 1.08996 * 109.47220 * 64.99738 * 14 10 9 35 35 H 1.09000 * 109.47132 * 184.99855 * 14 10 9 36 36 H 0.97005 * 119.99688 * 0.02562 * 15 14 10 37 37 H 1.09004 * 109.46707 * 299.99981 * 18 16 15 38 38 H 1.09000 * 109.47244 * 59.99977 * 18 16 15 39 39 H 0.96995 * 120.00028 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 7 3.2371 -0.8677 0.7537 5 6 4.5554 -0.8635 0.7512 6 6 5.2517 0.0429 -0.0336 7 7 4.6011 0.9081 -0.7910 8 6 3.2739 0.9198 -0.7950 9 7 2.5887 1.8284 -1.5829 10 6 3.3284 2.7844 -2.4105 11 1 4.2389 2.3146 -2.7826 12 6 3.6934 4.0103 -1.5710 13 8 2.5002 4.6925 -1.1801 14 6 2.4578 3.2164 -3.5922 15 7 2.0097 2.0313 -4.3277 16 6 1.2250 2.1696 -5.4147 17 8 0.8901 3.2750 -5.7842 18 6 0.7636 0.9503 -6.1709 19 16 -0.2662 1.4615 -7.5689 20 6 -0.6540 -0.1143 -8.2554 21 1 -0.2686 -1.0128 -7.7967 22 6 -1.4551 -0.2007 -9.3857 23 7 -1.9253 0.8944 -9.9444 24 14 -1.8668 -1.8713 -10.1130 25 1 -1.2207 -2.9362 -9.3044 26 1 -3.3389 -2.0662 -10.1033 27 1 -1.3676 -1.9396 -11.5100 28 1 5.0960 -1.5700 1.3638 29 1 6.3317 0.0391 -0.0287 30 1 1.6187 1.8321 -1.5869 31 1 4.3190 4.6808 -2.1601 32 1 4.2381 3.6926 -0.6818 33 1 2.6561 5.4821 -0.6442 34 1 1.5908 3.7645 -3.2235 35 1 3.0379 3.8578 -4.2556 36 1 2.2773 1.1470 -4.0318 37 1 1.6305 0.4021 -6.5399 38 1 0.1836 0.3090 -5.5073 39 1 -2.4848 0.8340 -10.7345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121079856.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:32 Heat of formation + Delta-G solvation = 4.601418 kcal Electronic energy + Delta-G solvation = -25435.050693 eV Core-core repulsion = 21504.864446 eV Total energy + Delta-G solvation = -3930.186247 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.71878 -39.53229 -38.25320 -37.01478 -36.26178 -34.78053 -34.02810 -32.43121 -31.93334 -29.85278 -28.91707 -26.22063 -25.76338 -25.32590 -24.19692 -21.55259 -20.42648 -20.02138 -18.96633 -18.35607 -17.82203 -17.56542 -16.53196 -16.34800 -15.93290 -15.70114 -15.37328 -14.93905 -14.80428 -14.70616 -14.48808 -14.22619 -13.81218 -13.61458 -13.40545 -13.24153 -13.07864 -12.99199 -12.77690 -12.56828 -12.22362 -11.94652 -11.76693 -11.60996 -11.06872 -11.02360 -10.82366 -10.74211 -10.48420 -9.81342 -9.75941 -9.46892 -9.08530 -8.98786 -8.51809 -8.24542 -6.50617 -6.22097 -3.92668 -0.02672 0.69357 2.14120 2.28980 2.47425 2.97168 3.04471 3.10864 3.21824 3.27747 3.32312 3.39776 3.59173 3.65885 3.80024 3.98184 4.19959 4.24489 4.35523 4.58240 4.62081 4.69891 4.90236 5.00780 5.06065 5.13278 5.17995 5.37106 5.55828 5.64447 5.79872 5.86782 6.11691 6.26398 6.35198 6.48862 6.86952 7.10264 7.19000 7.27771 7.58625 7.60550 8.35282 8.54189 9.23498 10.85417 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012840 B = 0.002600 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.156944 B =10765.258870 C =11974.236940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C 0.260 3.740 3 C 0.070 3.930 4 N -0.364 5.364 5 C -0.013 4.013 6 C 0.141 3.859 7 N -0.496 5.496 8 C 0.407 3.593 9 N -0.688 5.688 10 C 0.144 3.856 11 H 0.115 0.885 12 C 0.068 3.932 13 O -0.567 6.567 14 C 0.114 3.886 15 N -0.742 5.742 16 C 0.533 3.467 17 O -0.513 6.513 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.178 0.822 29 H 0.180 0.820 30 H 0.419 0.581 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.382 0.618 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.397 0.603 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.323 1.569 23.905 31.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.056 5.056 2 C -0.057 4.057 3 C -0.078 4.078 4 N -0.079 5.079 5 C -0.179 4.179 6 C -0.024 4.024 7 N -0.219 5.219 8 C 0.164 3.836 9 N -0.318 5.318 10 C 0.039 3.961 11 H 0.133 0.867 12 C -0.012 4.012 13 O -0.373 6.373 14 C -0.011 4.011 15 N -0.397 5.397 16 C 0.319 3.681 17 O -0.387 6.387 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.195 0.805 29 H 0.197 0.803 30 H 0.257 0.743 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.229 0.771 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.231 0.769 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.677 3.202 22.627 28.891 hybrid contribution 0.749 -2.414 0.530 2.582 sum 18.426 0.788 23.156 29.603 Atomic orbital electron populations 1.81357 1.11097 1.06404 1.06694 1.24705 0.91356 0.94830 0.94813 1.16459 0.87040 1.00377 1.03940 1.68124 1.09772 1.16586 1.13444 1.23465 0.89301 1.02104 1.02995 1.23903 1.01948 0.88189 0.88337 1.68198 1.05142 1.25316 1.23258 1.19015 0.89459 0.87279 0.87799 1.44751 1.09302 1.33471 1.44283 1.21530 0.96623 0.88399 0.89549 0.86707 1.22537 0.87278 0.93178 0.98219 1.86507 1.31485 1.44697 1.74613 1.21524 0.99454 0.88823 0.91291 1.46003 1.54096 1.09226 1.30418 1.20313 0.77186 0.91103 0.79488 1.90713 1.54700 1.27008 1.66247 1.23537 1.04791 0.98490 1.03641 1.85390 1.60504 1.11836 1.25486 1.22906 1.37011 0.92707 1.15705 0.90893 1.24996 0.94971 0.97802 0.95827 1.70025 1.32304 1.27326 1.20621 0.86112 0.78287 0.82250 0.78823 1.19616 1.20539 1.20545 0.80477 0.80262 0.74252 0.91930 0.92563 0.77083 0.89678 0.89713 0.76939 0.89215 0.89295 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -5.17 18.54 41.83 0.78 -4.40 16 2 C 0.26 2.98 14.32 -22.48 -0.32 2.66 16 3 C 0.07 0.65 6.61 -84.55 -0.56 0.09 16 4 N -0.36 -3.09 10.42 -10.74 -0.11 -3.20 16 5 C -0.01 -0.06 11.21 -17.40 -0.20 -0.26 16 6 C 0.14 0.54 11.22 -17.28 -0.19 0.35 16 7 N -0.50 -3.18 9.36 -11.97 -0.11 -3.29 16 8 C 0.41 3.25 7.46 -154.78 -1.15 2.09 16 9 N -0.69 -5.60 4.52 -53.63 -0.24 -5.84 16 10 C 0.14 1.07 2.55 -67.93 -0.17 0.90 16 11 H 0.12 0.76 7.54 -51.93 -0.39 0.37 16 12 C 0.07 0.41 6.86 37.16 0.25 0.66 16 13 O -0.57 -4.17 12.64 -35.23 -0.45 -4.62 16 14 C 0.11 1.21 5.12 -4.04 -0.02 1.19 16 15 N -0.74 -9.52 5.39 -60.29 -0.32 -9.85 16 16 C 0.53 9.86 7.85 -10.98 -0.09 9.77 16 17 O -0.51 -11.54 15.86 5.56 0.09 -11.45 16 18 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.54 -15.42 9.50 30.94 0.29 -15.13 16 21 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.38 13.22 55.49 0.73 -25.64 16 24 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H 0.18 0.25 8.06 -52.48 -0.42 -0.17 16 29 H 0.18 -0.01 8.06 -52.48 -0.42 -0.43 16 30 H 0.42 3.97 7.45 -40.82 -0.30 3.66 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 33 H 0.38 1.28 9.12 45.56 0.42 1.70 16 34 H 0.09 1.08 7.39 -51.93 -0.38 0.69 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.40 4.25 8.14 -40.82 -0.33 3.92 16 37 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 38 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -38.27 368.31 -6.85 -45.12 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -3.50 Total: 3.36 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -2.03 Total: 1.43 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.72 Total: -52.22 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.36 Total: -16.07 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.27 -6.85 -45.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121079856.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.725 kcal (2) G-P(sol) polarization free energy of solvation -38.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds