Wall clock time and date at job start Tue Mar 31 2020 19:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 N 1.33038 * 120.17983 * 319.05333 * 3 2 1 5 5 C 1.31834 * 119.99213 * 180.02562 * 4 3 2 6 6 C 1.38649 * 120.35056 * 0.02562 * 5 4 3 7 7 N 1.32113 * 120.35390 * 359.72575 * 6 5 4 8 8 C 1.32726 * 119.99860 * 0.55105 * 7 6 5 9 9 N 1.38408 * 120.17160 * 179.72659 * 8 7 6 10 10 C 1.46496 * 120.00108 * 359.72465 * 9 8 7 11 11 H 1.09002 * 109.47260 * 34.99967 * 10 9 8 12 12 C 1.52999 * 109.47135 * 275.00110 * 10 9 8 13 13 O 1.42903 * 109.47256 * 295.00379 * 12 10 9 14 14 C 1.53002 * 109.47141 * 155.00212 * 10 9 8 15 15 N 1.46499 * 109.47045 * 304.99657 * 14 10 9 16 16 C 1.34776 * 119.99754 * 179.97438 * 15 14 10 17 17 O 1.21276 * 120.00345 * 0.02562 * 16 15 14 18 18 C 1.50707 * 119.99723 * 180.02562 * 16 15 14 19 19 S 1.81001 * 109.46819 * 180.02562 * 18 16 15 20 20 C 1.76207 * 99.99476 * 179.97438 * 19 18 16 21 21 H 1.07993 * 120.00456 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99431 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00322 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99682 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47045 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47490 * 119.99782 * 24 22 20 27 27 H 1.48503 * 109.47216 * 240.00300 * 24 22 20 28 28 H 1.08005 * 119.82568 * 180.02562 * 5 4 3 29 29 H 1.08006 * 119.82147 * 179.97438 * 6 5 4 30 30 H 0.97000 * 119.99954 * 179.72521 * 9 8 7 31 31 H 1.08997 * 109.47286 * 174.99939 * 12 10 9 32 32 H 1.09008 * 109.47201 * 54.99719 * 12 10 9 33 33 H 0.96700 * 114.00311 * 180.02562 * 13 12 10 34 34 H 1.08996 * 109.47220 * 64.99738 * 14 10 9 35 35 H 1.09000 * 109.47132 * 184.99855 * 14 10 9 36 36 H 0.97005 * 119.99688 * 0.02562 * 15 14 10 37 37 H 1.09004 * 109.46707 * 299.99981 * 18 16 15 38 38 H 1.09000 * 109.47244 * 59.99977 * 18 16 15 39 39 H 0.96995 * 120.00028 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 7 3.2371 -0.8677 0.7537 5 6 4.5554 -0.8635 0.7512 6 6 5.2517 0.0429 -0.0336 7 7 4.6011 0.9081 -0.7910 8 6 3.2739 0.9198 -0.7950 9 7 2.5887 1.8284 -1.5829 10 6 3.3284 2.7844 -2.4105 11 1 4.2389 2.3146 -2.7826 12 6 3.6934 4.0103 -1.5710 13 8 2.5002 4.6925 -1.1801 14 6 2.4578 3.2164 -3.5922 15 7 2.0097 2.0313 -4.3277 16 6 1.2250 2.1696 -5.4147 17 8 0.8901 3.2750 -5.7842 18 6 0.7636 0.9503 -6.1709 19 16 -0.2662 1.4615 -7.5689 20 6 -0.6540 -0.1143 -8.2554 21 1 -0.2686 -1.0128 -7.7967 22 6 -1.4551 -0.2007 -9.3857 23 7 -1.9253 0.8944 -9.9444 24 14 -1.8668 -1.8713 -10.1130 25 1 -1.2207 -2.9362 -9.3044 26 1 -3.3389 -2.0662 -10.1033 27 1 -1.3676 -1.9396 -11.5100 28 1 5.0960 -1.5700 1.3638 29 1 6.3317 0.0391 -0.0287 30 1 1.6187 1.8321 -1.5869 31 1 4.3190 4.6808 -2.1601 32 1 4.2381 3.6926 -0.6818 33 1 2.6561 5.4821 -0.6442 34 1 1.5908 3.7645 -3.2235 35 1 3.0379 3.8578 -4.2556 36 1 2.2773 1.1470 -4.0318 37 1 1.6305 0.4021 -6.5399 38 1 0.1836 0.3090 -5.5073 39 1 -2.4848 0.8340 -10.7345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121079856.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:31 Heat of formation + Delta-G solvation = -28.258180 kcal Electronic energy + Delta-G solvation = -25436.475592 eV Core-core repulsion = 21504.864446 eV Total energy + Delta-G solvation = -3931.611146 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.22386 -40.78182 -39.07362 -37.86084 -36.83492 -35.70577 -34.74807 -34.61321 -32.76755 -31.01765 -29.77566 -27.74251 -26.78619 -26.36737 -24.75088 -22.20291 -21.81527 -20.64971 -19.95465 -19.42061 -18.87636 -18.11548 -17.85103 -17.41891 -16.91178 -16.68678 -16.52833 -16.22525 -16.02915 -15.65689 -15.25111 -15.05917 -14.90972 -14.71094 -14.42667 -14.38934 -14.23575 -14.02068 -13.81438 -13.39346 -13.32225 -13.19511 -12.93642 -12.73432 -12.64400 -12.38952 -12.30938 -11.74629 -11.35511 -11.18643 -11.03884 -10.93549 -10.32039 -10.26709 -10.17803 -9.06824 -8.70033 -8.37888 -6.16051 -0.53672 0.23649 1.22936 1.33994 1.39011 1.43290 1.53608 1.55349 1.71248 1.77182 2.19719 2.24593 2.46107 2.84479 2.96308 3.15313 3.27660 3.32487 3.47144 3.59419 3.85352 3.88570 4.04339 4.16556 4.21463 4.30367 4.44334 4.49647 4.55037 4.65124 4.66109 4.87840 5.24293 5.30851 5.38979 5.73120 5.79298 6.16928 6.18040 6.36047 6.46158 6.78107 6.89067 7.03543 7.14630 8.71653 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012840 B = 0.002600 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.156944 B =10765.258870 C =11974.236940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.281 3.719 3 C 0.033 3.967 4 N -0.393 5.393 5 C 0.000 4.000 6 C 0.163 3.837 7 N -0.500 5.500 8 C 0.408 3.592 9 N -0.695 5.695 10 C 0.154 3.846 11 H 0.132 0.868 12 C 0.071 3.929 13 O -0.592 6.592 14 C 0.115 3.885 15 N -0.714 5.714 16 C 0.535 3.465 17 O -0.559 6.559 18 C -0.132 4.132 19 S -0.146 6.146 20 C -0.547 4.547 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.999 3.001 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.271 1.271 28 H 0.215 0.785 29 H 0.229 0.771 30 H 0.410 0.590 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.397 0.603 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.411 0.589 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.915 -0.239 25.328 34.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.035 4.035 3 C -0.112 4.112 4 N -0.108 5.108 5 C -0.168 4.168 6 C -0.004 4.004 7 N -0.223 5.223 8 C 0.167 3.833 9 N -0.323 5.323 10 C 0.050 3.950 11 H 0.149 0.851 12 C -0.009 4.009 13 O -0.400 6.400 14 C -0.009 4.009 15 N -0.368 5.368 16 C 0.321 3.679 17 O -0.437 6.437 18 C -0.283 4.283 19 S 0.081 5.919 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.821 3.179 25 H -0.182 1.182 26 H -0.200 1.200 27 H -0.196 1.196 28 H 0.231 0.769 29 H 0.245 0.755 30 H 0.246 0.754 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.247 0.753 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.247 0.753 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 21.273 1.403 24.093 32.171 hybrid contribution -0.086 -1.855 0.275 1.877 sum 21.187 -0.452 24.368 32.293 Atomic orbital electron populations 1.81345 1.12733 1.08608 1.09006 1.25210 0.91997 0.93141 0.93126 1.16345 0.85852 1.02517 1.06466 1.68095 1.11712 1.17021 1.14012 1.24225 0.88087 1.02154 1.02367 1.24763 1.03911 0.85930 0.85773 1.68331 1.03987 1.26075 1.23891 1.18934 0.90063 0.86779 0.87479 1.44762 1.08896 1.33928 1.44744 1.21531 0.95933 0.89231 0.88353 0.85066 1.22569 0.87009 0.92759 0.98515 1.86473 1.32581 1.45791 1.75185 1.21630 0.99260 0.87716 0.92261 1.45715 1.51828 1.10970 1.28335 1.20000 0.77748 0.89618 0.80536 1.90701 1.56855 1.28244 1.67908 1.23380 1.04215 0.99635 1.01057 1.85535 1.63036 1.13728 1.29627 1.23227 1.37327 0.92790 1.16172 0.90112 1.26130 0.94537 1.02292 0.96161 1.70181 1.33128 1.30091 1.21276 0.84904 0.78136 0.76792 0.78103 1.18186 1.19983 1.19611 0.76856 0.75473 0.75366 0.90128 0.91629 0.75252 0.91729 0.89377 0.75274 0.87075 0.87979 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -12.78 18.54 19.00 0.35 -12.43 16 2 C 0.28 6.71 14.32 88.33 1.27 7.98 16 3 C 0.03 0.58 6.61 40.77 0.27 0.85 16 4 N -0.39 -5.95 10.42 -187.88 -1.96 -7.91 16 5 C 0.00 0.00 11.21 84.79 0.95 0.95 16 6 C 0.16 0.44 11.22 84.75 0.95 1.39 16 7 N -0.50 -4.55 9.36 -191.78 -1.79 -6.35 16 8 C 0.41 5.77 7.46 133.52 1.00 6.77 16 9 N -0.69 -10.55 4.52 -323.57 -1.46 -12.01 16 10 C 0.15 2.00 2.55 44.99 0.11 2.11 16 11 H 0.13 1.31 7.54 -2.39 -0.02 1.29 16 12 C 0.07 0.70 6.86 71.98 0.49 1.19 16 13 O -0.59 -8.16 12.64 -148.98 -1.88 -10.04 16 14 C 0.12 2.37 5.12 86.38 0.44 2.81 16 15 N -0.71 -17.74 5.39 -463.06 -2.50 -20.23 16 16 C 0.54 19.90 7.85 87.66 0.69 20.58 16 17 O -0.56 -25.94 15.86 -3.02 -0.05 -25.99 16 18 C -0.13 -5.36 6.16 71.24 0.44 -4.92 16 19 S -0.15 -8.27 20.57 -56.49 -1.16 -9.43 16 20 C -0.55 -31.87 9.50 67.96 0.65 -31.23 16 21 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 22 C 0.01 0.79 5.49 84.86 0.47 1.25 16 23 N -0.91 -56.60 13.22 21.65 0.29 -56.32 16 24 Si 1.00 44.42 29.55 68.60 2.03 46.44 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 28 H 0.21 -0.53 8.06 -2.91 -0.02 -0.56 16 29 H 0.23 -1.61 8.06 -2.91 -0.02 -1.63 16 30 H 0.41 7.85 7.45 -92.71 -0.69 7.16 16 31 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.40 2.26 9.12 -74.06 -0.68 1.58 16 34 H 0.06 1.66 7.39 -2.39 -0.02 1.65 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 36 H 0.41 8.11 8.14 -92.70 -0.75 7.36 16 37 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 38 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 39 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -88.47 368.31 -1.39 -89.86 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -0.97 Total: 14.66 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 7.72 Total: 9.74 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -7.07 Total: -115.24 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -1.93 Total: -36.03 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.43 kcal Total: -88.47 -1.39 -89.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121079856.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.603 kcal (2) G-P(sol) polarization free energy of solvation -88.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds