Wall clock time and date at job start Tue Mar 31 2020 19:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39413 * 120.06396 * 86.16450 * 3 2 1 5 5 N 1.32130 * 120.04653 * 179.97438 * 4 3 2 6 6 C 1.31974 * 120.18413 * 0.02562 * 5 4 3 7 7 C 1.39566 * 120.12376 * 0.02562 * 6 5 4 8 8 N 1.38988 * 120.01888 * 179.97438 * 7 6 5 9 9 C 1.46500 * 119.99970 * 0.02562 * 8 7 6 10 10 H 1.08998 * 109.46956 * 324.98897 * 9 8 7 11 11 C 1.52991 * 109.47424 * 84.99527 * 9 8 7 12 12 O 1.42900 * 109.47274 * 64.99870 * 11 9 8 13 13 C 1.53005 * 109.46901 * 204.99901 * 9 8 7 14 14 N 1.46496 * 109.47195 * 54.99261 * 13 9 8 15 15 C 1.34784 * 120.00132 * 180.02562 * 14 13 9 16 16 O 1.21285 * 119.99337 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00101 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.46833 * 179.97438 * 17 15 14 19 19 C 1.76204 * 99.99905 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99693 * 0.02562 * 19 18 17 21 21 C 1.38789 * 120.00117 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00165 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00202 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47201 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47715 * 119.99888 * 23 21 19 26 26 H 1.48505 * 109.47272 * 240.00146 * 23 21 19 27 27 N 1.32405 * 119.95763 * 359.97438 * 7 6 5 28 28 H 1.07997 * 119.97882 * 359.97438 * 4 3 2 29 29 H 1.07994 * 119.93294 * 179.72136 * 6 5 4 30 30 H 0.97005 * 119.99773 * 179.97438 * 8 7 6 31 31 H 1.09001 * 109.47163 * 184.99640 * 11 9 8 32 32 H 1.09001 * 109.47315 * 305.00009 * 11 9 8 33 33 H 0.96701 * 114.00476 * 179.97438 * 12 11 9 34 34 H 1.08990 * 109.47092 * 174.99887 * 13 9 8 35 35 H 1.09003 * 109.46364 * 294.99905 * 13 9 8 36 36 H 0.96998 * 120.00430 * 0.02562 * 14 13 9 37 37 H 1.09004 * 109.46869 * 300.00164 * 17 15 14 38 38 H 1.09003 * 109.46756 * 60.00067 * 17 15 14 39 39 H 0.96999 * 120.00406 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2664 -0.0798 -1.2039 5 7 4.5877 -0.0786 -1.2035 6 6 5.2509 -0.0020 -0.0651 7 6 4.5592 0.0777 1.1445 8 7 5.2598 0.1578 2.3422 9 6 6.7247 0.1591 2.3352 10 1 7.0848 -0.4844 1.5325 11 6 7.2324 1.5850 2.1124 12 8 6.8590 2.4027 3.2232 13 6 7.2416 -0.3625 3.6775 14 7 6.6598 -1.6798 3.9464 15 6 6.9739 -2.3365 5.0807 16 8 7.7378 -1.8365 5.8791 17 6 6.3758 -3.6918 5.3570 18 16 6.9872 -4.3087 6.9450 19 6 6.1523 -5.8589 7.0130 20 1 5.4978 -6.1555 6.2067 21 6 6.3357 -6.6987 8.1027 22 7 7.1330 -6.3369 9.0856 23 14 5.4512 -8.3424 8.1745 24 1 4.6199 -8.5108 6.9555 25 1 6.4497 -9.4391 8.2486 26 1 4.5803 -8.3838 9.3766 27 7 3.2351 0.0770 1.1503 28 1 2.7272 -0.1430 -2.1374 29 1 6.3308 -0.0059 -0.0692 30 1 4.7787 0.2135 3.1827 31 1 8.3183 1.5736 2.0185 32 1 6.7931 1.9888 1.2002 33 1 7.1491 3.3222 3.1499 34 1 8.3277 -0.4455 3.6412 35 1 6.9563 0.3293 4.4702 36 1 6.0485 -2.0795 3.3081 37 1 5.2895 -3.6092 5.3927 38 1 6.6618 -4.3835 4.5645 39 1 7.2615 -6.9240 9.8470 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121085783.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:08 Heat of formation + Delta-G solvation = 8.069188 kcal Electronic energy + Delta-G solvation = -25034.914096 eV Core-core repulsion = 21104.878222 eV Total energy + Delta-G solvation = -3930.035873 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75165 -39.61049 -38.36409 -37.14860 -36.25251 -34.94258 -34.10697 -32.44995 -31.78541 -29.89264 -29.02331 -26.35073 -25.78296 -25.36444 -24.28458 -21.95005 -20.46417 -19.79621 -18.80986 -18.17718 -17.84519 -17.37174 -16.82550 -16.54489 -16.36104 -15.90559 -15.36841 -15.03029 -14.87798 -14.82014 -14.42029 -13.95472 -13.86582 -13.76713 -13.64178 -13.38439 -13.23112 -12.92007 -12.80373 -12.58478 -12.15551 -12.11924 -11.82577 -11.70624 -11.08344 -11.04220 -10.80746 -10.74419 -10.54120 -9.83386 -9.82323 -9.50473 -9.10660 -9.02566 -8.52538 -8.26691 -6.52764 -6.23924 -3.94685 -0.15634 0.66759 1.81153 2.36138 2.42662 2.92218 3.00001 3.02647 3.20522 3.26286 3.30547 3.33037 3.61339 3.63046 3.69263 3.81296 4.14662 4.18419 4.30075 4.39515 4.47478 4.65698 4.74233 4.86192 4.90745 5.10804 5.11574 5.30635 5.51424 5.58031 5.74651 5.84215 6.03097 6.09728 6.44142 6.71251 6.80230 6.94281 7.11052 7.26928 7.55538 7.58459 8.33438 8.50995 9.21810 10.83552 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011076 B = 0.002457 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.270645 B =11391.907081 C =13300.167257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C 0.266 3.734 3 C 0.203 3.797 4 C 0.030 3.970 5 N -0.393 5.393 6 C 0.016 3.984 7 C 0.372 3.628 8 N -0.696 5.696 9 C 0.141 3.859 10 H 0.106 0.894 11 C 0.061 3.939 12 O -0.563 6.563 13 C 0.117 3.883 14 N -0.742 5.742 15 C 0.534 3.466 16 O -0.514 6.514 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 N -0.474 5.474 28 H 0.177 0.823 29 H 0.174 0.826 30 H 0.418 0.582 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.383 0.617 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.398 0.602 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.981 17.623 -22.734 28.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.051 5.051 2 C -0.052 4.052 3 C 0.061 3.939 4 C -0.132 4.132 5 N -0.105 5.105 6 C -0.155 4.155 7 C 0.129 3.871 8 N -0.329 5.329 9 C 0.036 3.964 10 H 0.124 0.876 11 C -0.019 4.019 12 O -0.368 6.368 13 C -0.007 4.007 14 N -0.397 5.397 15 C 0.320 3.680 16 O -0.387 6.387 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.206 1.206 27 N -0.198 5.198 28 H 0.194 0.806 29 H 0.190 0.810 30 H 0.256 0.744 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.231 0.769 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.232 0.768 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.425 17.848 -21.020 27.612 hybrid contribution -1.268 -1.258 -0.952 2.024 sum -2.693 16.590 -21.972 27.662 Atomic orbital electron populations 1.81293 1.11315 1.06274 1.06211 1.24751 0.91357 0.94816 0.94285 1.17001 0.86810 0.99677 0.90430 1.23333 0.90456 1.01663 0.97766 1.68381 1.07872 1.06194 1.28067 1.23471 1.01761 1.03312 0.86993 1.19225 0.88031 0.91365 0.88451 1.44632 1.05113 1.77490 1.05619 1.21583 0.78925 0.95853 1.00086 0.87592 1.22636 0.99086 0.90643 0.89582 1.86518 1.81728 1.25051 1.43522 1.21458 0.98962 0.85064 0.95238 1.45990 1.50632 1.19641 1.23466 1.20310 0.80891 0.86551 0.80276 1.90719 1.34470 1.67953 1.45585 1.23532 1.04006 0.95560 1.07348 1.85393 1.61382 1.20841 1.15670 1.22900 1.32449 1.03856 1.09118 0.90886 1.24991 0.95279 0.98690 0.94634 1.70022 1.34965 1.37003 1.08284 0.86115 0.79194 0.81934 0.78242 1.19615 1.20544 1.20551 1.67777 1.07116 1.16514 1.28413 0.80577 0.80958 0.74424 0.91616 0.92746 0.76913 0.89656 0.89418 0.76781 0.89226 0.89228 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -4.21 18.54 41.83 0.78 -3.43 16 2 C 0.27 2.45 15.56 -22.47 -0.35 2.10 16 3 C 0.20 1.61 6.58 -84.91 -0.56 1.05 16 4 C 0.03 0.19 10.92 -16.99 -0.19 0.00 16 5 N -0.39 -2.67 10.48 -12.53 -0.13 -2.80 16 6 C 0.02 0.09 10.02 -17.00 -0.17 -0.08 16 7 C 0.37 2.64 7.65 -154.87 -1.18 1.46 16 8 N -0.70 -4.48 4.63 -53.82 -0.25 -4.73 16 9 C 0.14 0.71 2.22 -67.93 -0.15 0.56 16 10 H 0.11 0.30 6.46 -51.93 -0.34 -0.03 16 11 C 0.06 0.23 6.78 37.15 0.25 0.48 16 12 O -0.56 -3.23 12.64 -35.23 -0.45 -3.67 16 13 C 0.12 1.04 5.12 -4.04 -0.02 1.02 16 14 N -0.74 -8.40 5.39 -60.30 -0.32 -8.73 16 15 C 0.53 9.25 7.85 -10.98 -0.09 9.17 16 16 O -0.51 -11.03 15.86 5.55 0.09 -10.94 16 17 C -0.15 -3.00 6.16 36.00 0.22 -2.77 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 19 C -0.53 -15.12 9.50 30.94 0.29 -14.83 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.08 5.49 -17.44 -0.10 1.99 16 22 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 23 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 N -0.47 -4.27 10.46 -10.15 -0.11 -4.38 16 28 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 29 H 0.17 0.50 6.19 -52.49 -0.32 0.17 16 30 H 0.42 3.33 8.73 -40.82 -0.36 2.98 16 31 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.05 0.16 7.79 -51.93 -0.40 -0.24 16 33 H 0.38 0.75 9.12 45.56 0.42 1.16 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.96 7.39 -51.93 -0.38 0.58 16 36 H 0.40 3.65 8.14 -40.82 -0.33 3.32 16 37 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 38 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 39 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -37.43 367.05 -6.78 -44.21 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -3.38 Total: 1.52 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.03 Total: 0.14 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.70 Total: -49.33 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.36 Total: -14.61 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.43 -6.78 -44.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121085783.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.278 kcal (2) G-P(sol) polarization free energy of solvation -37.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds