Wall clock time and date at job start Tue Mar 31 2020 19:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39413 * 120.06396 * 86.16450 * 3 2 1 5 5 N 1.32130 * 120.04653 * 179.97438 * 4 3 2 6 6 C 1.31974 * 120.18413 * 0.02562 * 5 4 3 7 7 C 1.39566 * 120.12376 * 0.02562 * 6 5 4 8 8 N 1.38988 * 120.01888 * 179.97438 * 7 6 5 9 9 C 1.46500 * 119.99970 * 0.02562 * 8 7 6 10 10 H 1.08998 * 109.46956 * 324.98897 * 9 8 7 11 11 C 1.52991 * 109.47424 * 84.99527 * 9 8 7 12 12 O 1.42900 * 109.47274 * 64.99870 * 11 9 8 13 13 C 1.53005 * 109.46901 * 204.99901 * 9 8 7 14 14 N 1.46496 * 109.47195 * 54.99261 * 13 9 8 15 15 C 1.34784 * 120.00132 * 180.02562 * 14 13 9 16 16 O 1.21285 * 119.99337 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00101 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.46833 * 179.97438 * 17 15 14 19 19 C 1.76204 * 99.99905 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99693 * 0.02562 * 19 18 17 21 21 C 1.38789 * 120.00117 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00165 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00202 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47201 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47715 * 119.99888 * 23 21 19 26 26 H 1.48505 * 109.47272 * 240.00146 * 23 21 19 27 27 N 1.32405 * 119.95763 * 359.97438 * 7 6 5 28 28 H 1.07997 * 119.97882 * 359.97438 * 4 3 2 29 29 H 1.07994 * 119.93294 * 179.72136 * 6 5 4 30 30 H 0.97005 * 119.99773 * 179.97438 * 8 7 6 31 31 H 1.09001 * 109.47163 * 184.99640 * 11 9 8 32 32 H 1.09001 * 109.47315 * 305.00009 * 11 9 8 33 33 H 0.96701 * 114.00476 * 179.97438 * 12 11 9 34 34 H 1.08990 * 109.47092 * 174.99887 * 13 9 8 35 35 H 1.09003 * 109.46364 * 294.99905 * 13 9 8 36 36 H 0.96998 * 120.00430 * 0.02562 * 14 13 9 37 37 H 1.09004 * 109.46869 * 300.00164 * 17 15 14 38 38 H 1.09003 * 109.46756 * 60.00067 * 17 15 14 39 39 H 0.96999 * 120.00406 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2664 -0.0798 -1.2039 5 7 4.5877 -0.0786 -1.2035 6 6 5.2509 -0.0020 -0.0651 7 6 4.5592 0.0777 1.1445 8 7 5.2598 0.1578 2.3422 9 6 6.7247 0.1591 2.3352 10 1 7.0848 -0.4844 1.5325 11 6 7.2324 1.5850 2.1124 12 8 6.8590 2.4027 3.2232 13 6 7.2416 -0.3625 3.6775 14 7 6.6598 -1.6798 3.9464 15 6 6.9739 -2.3365 5.0807 16 8 7.7378 -1.8365 5.8791 17 6 6.3758 -3.6918 5.3570 18 16 6.9872 -4.3087 6.9450 19 6 6.1523 -5.8589 7.0130 20 1 5.4978 -6.1555 6.2067 21 6 6.3357 -6.6987 8.1027 22 7 7.1330 -6.3369 9.0856 23 14 5.4512 -8.3424 8.1745 24 1 4.6199 -8.5108 6.9555 25 1 6.4497 -9.4391 8.2486 26 1 4.5803 -8.3838 9.3766 27 7 3.2351 0.0770 1.1503 28 1 2.7272 -0.1430 -2.1374 29 1 6.3308 -0.0059 -0.0692 30 1 4.7787 0.2135 3.1827 31 1 8.3183 1.5736 2.0185 32 1 6.7931 1.9888 1.2002 33 1 7.1491 3.3222 3.1499 34 1 8.3277 -0.4455 3.6412 35 1 6.9563 0.3293 4.4702 36 1 6.0485 -2.0795 3.3081 37 1 5.2895 -3.6092 5.3927 38 1 6.6618 -4.3835 4.5645 39 1 7.2615 -6.9240 9.8470 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121085783.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:07 Heat of formation + Delta-G solvation = -24.168406 kcal Electronic energy + Delta-G solvation = -25036.312023 eV Core-core repulsion = 21104.878222 eV Total energy + Delta-G solvation = -3931.433800 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.26317 -40.71980 -39.08623 -37.86313 -36.71197 -35.67995 -34.92923 -34.59045 -32.53988 -30.94601 -29.79472 -27.72022 -26.92908 -26.25178 -24.82224 -22.46880 -21.75184 -20.34758 -19.90831 -19.25460 -18.57308 -17.84143 -17.73984 -17.48057 -17.18565 -16.88883 -16.53227 -16.48630 -16.11902 -15.62551 -15.27198 -14.92041 -14.68082 -14.57649 -14.50151 -14.34752 -14.29215 -14.14272 -13.68604 -13.29837 -13.21996 -13.16567 -12.92143 -12.67769 -12.62294 -12.51449 -12.26373 -11.71910 -11.29791 -11.16615 -10.95744 -10.83527 -10.34030 -10.27830 -10.12724 -8.99858 -8.66513 -8.35704 -6.13107 -0.68412 0.16879 1.17551 1.26815 1.40340 1.46430 1.57394 1.61853 1.72587 1.87007 2.24274 2.28501 2.41604 2.78718 2.98604 3.24845 3.31054 3.32340 3.34993 3.65361 3.79035 3.93789 3.97117 4.06756 4.27034 4.31248 4.38432 4.50895 4.63922 4.67039 4.67394 4.93728 5.10782 5.38698 5.41540 5.56783 6.11086 6.19252 6.22852 6.40114 6.45491 6.75363 6.96710 7.06130 7.23439 8.73665 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011076 B = 0.002457 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.270645 B =11391.907081 C =13300.167257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.288 3.712 3 C 0.183 3.817 4 C 0.045 3.955 5 N -0.406 5.406 6 C 0.035 3.965 7 C 0.366 3.634 8 N -0.698 5.698 9 C 0.148 3.852 10 H 0.139 0.861 11 C 0.060 3.940 12 O -0.590 6.590 13 C 0.118 3.882 14 N -0.712 5.712 15 C 0.536 3.464 16 O -0.562 6.562 17 C -0.132 4.132 18 S -0.148 6.148 19 C -0.546 4.546 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 0.997 3.003 24 H -0.258 1.258 25 H -0.272 1.272 26 H -0.275 1.275 27 N -0.504 5.504 28 H 0.202 0.798 29 H 0.206 0.794 30 H 0.408 0.592 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.397 0.603 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.413 0.587 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.786 17.435 -25.614 30.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.029 4.029 3 C 0.043 3.957 4 C -0.117 4.117 5 N -0.118 5.118 6 C -0.137 4.137 7 C 0.123 3.877 8 N -0.330 5.330 9 C 0.043 3.957 10 H 0.157 0.843 11 C -0.019 4.019 12 O -0.399 6.399 13 C -0.006 4.006 14 N -0.367 5.367 15 C 0.322 3.678 16 O -0.440 6.440 17 C -0.283 4.283 18 S 0.079 5.921 19 C -0.693 4.693 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.182 1.182 25 H -0.198 1.198 26 H -0.201 1.201 27 N -0.229 5.229 28 H 0.218 0.782 29 H 0.223 0.777 30 H 0.245 0.755 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.247 0.753 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.250 0.750 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.264 17.691 -23.988 29.833 hybrid contribution -1.258 -1.067 -0.144 1.656 sum -2.521 16.624 -24.131 29.412 Atomic orbital electron populations 1.81302 1.12555 1.08185 1.07632 1.24984 0.91596 0.93399 0.92966 1.16993 0.85986 1.01744 0.90973 1.23685 0.90460 0.99592 0.97958 1.68514 1.07921 1.06979 1.28363 1.23981 1.03102 1.00619 0.85974 1.19347 0.87512 0.91765 0.89039 1.44684 1.05515 1.77640 1.05138 1.21716 0.78099 0.97390 0.98459 0.84340 1.22753 1.00384 0.89303 0.89501 1.86481 1.82272 1.26455 1.44683 1.21585 0.99249 0.82833 0.96953 1.45686 1.49547 1.19997 1.21431 1.19951 0.80484 0.85987 0.81422 1.90709 1.36818 1.68825 1.47609 1.23382 1.04561 0.97199 1.03154 1.85538 1.62929 1.21834 1.21832 1.23223 1.32448 1.04108 1.09558 0.90105 1.26099 0.95986 1.02960 0.94072 1.70178 1.36667 1.38733 1.09113 0.84926 0.77964 0.76490 0.78697 1.18188 1.19776 1.20055 1.67642 1.08438 1.17502 1.29343 0.78177 0.77729 0.75514 0.89552 0.91202 0.75263 0.89233 0.91606 0.75037 0.87793 0.87187 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -9.55 18.54 19.00 0.35 -9.19 16 2 C 0.29 5.23 15.56 88.33 1.37 6.60 16 3 C 0.18 2.67 6.58 40.47 0.27 2.94 16 4 C 0.04 0.44 10.92 84.93 0.93 1.37 16 5 N -0.41 -4.12 10.48 -193.56 -2.03 -6.15 16 6 C 0.04 0.26 10.02 84.99 0.85 1.12 16 7 C 0.37 4.25 7.65 133.17 1.02 5.26 16 8 N -0.70 -7.28 4.63 -324.18 -1.50 -8.78 16 9 C 0.15 1.00 2.22 44.99 0.10 1.10 16 10 H 0.14 0.06 6.46 -2.39 -0.02 0.05 16 11 C 0.06 0.25 6.78 71.98 0.49 0.74 16 12 O -0.59 -5.71 12.64 -148.98 -1.88 -7.59 16 13 C 0.12 1.85 5.12 86.38 0.44 2.30 16 14 N -0.71 -14.76 5.39 -463.06 -2.49 -17.25 16 15 C 0.54 18.27 7.85 87.66 0.69 18.95 16 16 O -0.56 -24.54 15.86 -3.05 -0.05 -24.59 16 17 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 18 S -0.15 -8.13 20.57 -56.49 -1.16 -9.29 16 19 C -0.55 -31.01 9.50 67.95 0.65 -30.37 16 20 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 21 C 0.01 0.77 5.49 84.86 0.47 1.24 16 22 N -0.91 -55.71 13.22 21.65 0.29 -55.42 16 23 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 24 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 27 N -0.50 -8.40 10.46 -186.03 -1.95 -10.35 16 28 H 0.20 0.83 8.06 -2.91 -0.02 0.81 16 29 H 0.21 0.06 6.19 -2.91 -0.02 0.04 16 30 H 0.41 5.96 8.73 -92.70 -0.81 5.15 16 31 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.07 0.12 7.79 -2.39 -0.02 0.10 16 33 H 0.40 0.90 9.12 -74.06 -0.68 0.22 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.40 7.39 -2.39 -0.02 1.39 16 36 H 0.41 6.37 8.14 -92.71 -0.75 5.61 16 37 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 38 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 39 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -85.24 367.05 -1.77 -87.01 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -1.08 Total: 9.29 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 7.71 Total: 6.64 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -7.33 Total: -107.15 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.93 Total: -32.18 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -85.24 -1.77 -87.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121085783.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.843 kcal (2) G-P(sol) polarization free energy of solvation -85.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds