Wall clock time and date at job start Tue Mar 31 2020 19:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00157 * 2 1 4 4 H 1.48508 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47273 * 300.00281 * 3 2 1 6 6 H 1.48508 * 109.47074 * 60.00652 * 3 2 1 7 7 C 1.38955 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99596 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99993 * 179.72799 * 9 7 2 11 11 O 1.21297 * 119.99994 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99956 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47159 * 179.97438 * 12 10 9 14 14 C 1.34779 * 120.00150 * 179.97438 * 13 12 10 15 15 O 1.21281 * 119.99957 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99832 * 180.02562 * 14 13 12 17 17 H 1.09000 * 109.60268 * 5.24613 * 16 14 13 18 18 C 1.52919 * 109.60448 * 125.74177 * 16 14 13 19 19 N 1.45743 * 110.48992 * 170.50674 * 18 16 14 20 20 C 1.33356 * 124.10833 * 340.92581 * 19 18 16 21 21 O 1.21278 * 118.25016 * 182.19918 * 20 19 18 22 22 C 1.50181 * 123.50705 * 2.22213 * 20 19 18 23 23 C 1.53067 * 109.88853 * 342.41704 * 22 20 19 24 24 H 1.08997 * 109.70595 * 289.14880 * 23 22 20 25 25 C 1.53004 * 109.67027 * 168.63598 * 23 22 20 26 26 F 1.39902 * 109.47240 * 295.09949 * 25 23 22 27 27 F 1.39889 * 109.47349 * 55.10569 * 25 23 22 28 28 F 1.39908 * 109.46923 * 175.10456 * 25 23 22 29 29 H 0.96997 * 119.99869 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00038 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47418 * 299.99681 * 12 10 9 32 32 H 1.09004 * 109.46866 * 59.99916 * 12 10 9 33 33 H 0.97007 * 119.99787 * 359.97438 * 13 12 10 34 34 H 1.08999 * 109.29489 * 290.82414 * 18 16 14 35 35 H 1.08997 * 109.29792 * 50.19464 * 18 16 14 36 36 H 0.97003 * 117.95157 * 160.92155 * 19 18 16 37 37 H 1.09000 * 109.39880 * 222.29143 * 22 20 19 38 38 H 1.08998 * 109.33336 * 102.50343 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0016 10 6 1.9972 -3.5579 -0.0077 11 8 3.2101 -3.5579 -0.0127 12 6 1.2437 -4.8629 -0.0082 13 7 2.1956 -5.9765 -0.0159 14 6 1.7463 -7.2472 -0.0172 15 8 0.5539 -7.4688 -0.0126 16 6 2.7257 -8.3926 -0.0246 17 1 3.7409 -8.0063 0.0659 18 6 2.4247 -9.3324 1.1436 19 7 3.2080 -10.5561 1.0288 20 6 3.7732 -10.9788 -0.1027 21 8 4.3690 -12.0350 -0.0871 22 6 3.7116 -10.2167 -1.3953 23 6 2.5889 -9.1781 -1.3345 24 1 1.6218 -9.6802 -1.3620 25 6 2.7068 -8.2219 -2.5232 26 9 3.8941 -7.4898 -2.4168 27 9 2.7171 -8.9568 -3.7135 28 9 1.6168 -7.3448 -2.5260 29 1 -0.4850 0.8400 0.0004 30 1 0.3533 -2.3906 -0.0016 31 1 0.6207 -4.9232 0.8841 32 1 0.6133 -4.9181 -0.8958 33 1 3.1493 -5.7992 -0.0200 34 1 2.6715 -8.8331 2.0805 35 1 1.3637 -9.5823 1.1407 36 1 3.3259 -11.0969 1.8253 37 1 3.5203 -10.9091 -2.2151 38 1 4.6631 -9.7119 -1.5623 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128705084.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:50 Heat of formation + Delta-G solvation = -266.214932 kcal Electronic energy + Delta-G solvation = -30290.534495 eV Core-core repulsion = 25331.702407 eV Total energy + Delta-G solvation = -4958.832088 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.35029 -47.84153 -47.76429 -41.10662 -39.66656 -38.29723 -36.74220 -34.60182 -34.21070 -33.79573 -31.45924 -30.77633 -27.83901 -27.38212 -25.06515 -24.17808 -22.67875 -20.89433 -20.00713 -19.58443 -18.71028 -18.64859 -18.27864 -18.05691 -17.75364 -16.86487 -16.63476 -15.99370 -15.55136 -15.35881 -15.26953 -14.96691 -14.70232 -14.52931 -14.39886 -14.19472 -14.14104 -14.04417 -13.92731 -13.86801 -13.74372 -13.59067 -13.26450 -12.49470 -12.35995 -12.26333 -12.12934 -11.87823 -11.71496 -11.67970 -11.18269 -10.44777 -10.37487 -10.35221 -10.03497 -9.69948 -9.57148 -9.00464 -8.70763 -8.15761 -6.56669 -3.98735 2.13509 2.29466 2.34971 2.69615 3.01592 3.06622 3.19769 3.26374 3.38172 3.40618 3.65222 3.67530 4.04203 4.09214 4.15127 4.26662 4.32720 4.42911 4.67120 4.73867 4.78707 4.99410 5.04949 5.11832 5.15134 5.33718 5.78324 5.86057 5.97950 6.25295 6.45047 6.77352 7.41542 7.51738 7.69978 7.85967 8.13209 8.39002 8.99448 9.33183 9.80559 10.60162 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.021441 B = 0.002767 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.603165 B =10117.140111 C =10500.290962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.547 5.547 10 C 0.426 3.574 11 O -0.597 6.597 12 C 0.109 3.891 13 N -0.695 5.695 14 C 0.514 3.486 15 O -0.532 6.532 16 C -0.123 4.123 17 H 0.114 0.886 18 C 0.127 3.873 19 N -0.716 5.716 20 C 0.528 3.472 21 O -0.547 6.547 22 C -0.133 4.133 23 C -0.125 4.125 24 H 0.135 0.865 25 C 0.452 3.548 26 F -0.175 7.175 27 F -0.179 7.179 28 F -0.166 7.166 29 H 0.274 0.726 30 H 0.396 0.604 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.413 0.587 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.407 0.593 37 H 0.122 0.878 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.879 -18.634 -0.309 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.182 5.182 10 C 0.212 3.788 11 O -0.483 6.483 12 C -0.019 4.019 13 N -0.348 5.348 14 C 0.297 3.703 15 O -0.409 6.409 16 C -0.145 4.145 17 H 0.132 0.868 18 C 0.003 3.997 19 N -0.369 5.369 20 C 0.315 3.685 21 O -0.425 6.425 22 C -0.173 4.173 23 C -0.145 4.145 24 H 0.153 0.847 25 C 0.398 3.602 26 F -0.156 7.156 27 F -0.160 7.160 28 F -0.147 7.147 29 H 0.084 0.916 30 H 0.230 0.770 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.251 0.749 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.244 0.756 37 H 0.140 0.860 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.969 -18.953 -0.534 19.192 hybrid contribution 0.170 1.176 0.051 1.189 sum 3.139 -17.777 -0.483 18.059 Atomic orbital electron populations 1.69617 1.06031 1.28500 1.49218 1.25333 0.95668 0.99976 0.96707 0.85759 0.79706 0.80775 0.77865 1.19098 1.20581 1.20585 1.19781 0.93499 0.81939 1.48226 0.87582 1.41796 1.09494 1.04488 1.62429 1.19696 0.88300 0.84951 0.85858 1.90508 1.13639 1.86755 1.57427 1.21008 0.91746 0.85607 1.03504 1.45708 1.11907 1.04428 1.72797 1.19801 0.89092 0.83608 0.77760 1.90731 1.15892 1.84558 1.49691 1.21623 1.02493 0.95424 0.94974 0.86774 1.21219 0.97172 0.83947 0.97403 1.45423 1.53681 1.25514 1.12272 1.19713 0.78141 0.85585 0.85080 1.90806 1.43157 1.23066 1.85499 1.21776 0.99842 0.98065 0.97636 1.22555 1.04871 0.95776 0.91289 0.84687 1.20332 0.74460 0.81025 0.84368 1.93224 1.47404 1.78938 1.96078 1.93193 1.96245 1.76851 1.49739 1.93290 1.54344 1.70753 1.96277 0.91587 0.77032 0.89531 0.89531 0.74899 0.88687 0.89131 0.75596 0.85984 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.34 13.05 55.50 0.72 -22.61 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.12 29.55 -169.99 -5.02 15.09 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.31 -8.07 9.68 -14.93 -0.14 -8.22 16 8 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.55 -13.09 5.29 -10.96 -0.06 -13.14 16 10 C 0.43 9.28 7.85 -10.99 -0.09 9.20 16 11 O -0.60 -14.59 15.24 5.54 0.08 -14.50 16 12 C 0.11 1.83 6.15 -5.20 -0.03 1.80 16 13 N -0.70 -10.06 5.51 -61.47 -0.34 -10.40 16 14 C 0.51 6.44 4.16 -10.98 -0.05 6.39 16 15 O -0.53 -8.00 16.23 5.56 0.09 -7.91 16 16 C -0.12 -1.05 1.95 -91.63 -0.18 -1.23 16 17 H 0.11 0.84 7.70 -51.93 -0.40 0.44 16 18 C 0.13 0.83 6.44 -4.49 -0.03 0.80 16 19 N -0.72 -4.81 5.45 -61.40 -0.33 -5.15 16 20 C 0.53 4.72 7.71 -11.87 -0.09 4.63 16 21 O -0.55 -7.03 17.78 5.56 0.10 -6.93 16 22 C -0.13 -0.97 5.02 -28.10 -0.14 -1.11 16 23 C -0.12 -1.03 1.93 -90.40 -0.17 -1.20 16 24 H 0.14 1.02 8.13 -51.93 -0.42 0.60 16 25 C 0.45 4.86 2.56 37.16 0.10 4.95 16 26 F -0.18 -2.00 16.26 2.25 0.04 -1.96 16 27 F -0.18 -1.87 16.84 2.25 0.04 -1.84 16 28 F -0.17 -2.26 14.72 2.25 0.03 -2.23 16 29 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.40 9.09 7.90 -40.82 -0.32 8.77 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.41 6.00 7.29 -40.82 -0.30 5.70 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.62 7.74 -51.93 -0.40 0.22 16 36 H 0.41 2.26 8.80 -40.82 -0.36 1.90 16 37 H 0.12 0.78 8.04 -51.93 -0.42 0.37 16 38 H 0.12 0.77 7.69 -51.93 -0.40 0.37 16 LS Contribution 339.37 15.07 5.11 5.11 Total: -1.00 -32.73 339.37 -4.26 -36.99 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -3.80 Total: 12.89 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: -0.92 Total: 16.59 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.01 Total: -51.31 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: 0.27 Total: -29.34 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.11 Total: -6.03 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.73 -4.26 -36.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128705084.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -229.229 kcal (2) G-P(sol) polarization free energy of solvation -32.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds