Wall clock time and date at job start Tue Mar 31 2020 19:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00157 * 2 1 4 4 H 1.48508 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47273 * 300.00281 * 3 2 1 6 6 H 1.48508 * 109.47074 * 60.00652 * 3 2 1 7 7 C 1.38955 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99596 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99993 * 179.72799 * 9 7 2 11 11 O 1.21297 * 119.99994 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99956 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47159 * 179.97438 * 12 10 9 14 14 C 1.34779 * 120.00150 * 179.97438 * 13 12 10 15 15 O 1.21281 * 119.99957 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99832 * 180.02562 * 14 13 12 17 17 H 1.09000 * 109.60268 * 5.24613 * 16 14 13 18 18 C 1.52919 * 109.60448 * 125.74177 * 16 14 13 19 19 N 1.45743 * 110.48992 * 170.50674 * 18 16 14 20 20 C 1.33356 * 124.10833 * 340.92581 * 19 18 16 21 21 O 1.21278 * 118.25016 * 182.19918 * 20 19 18 22 22 C 1.50181 * 123.50705 * 2.22213 * 20 19 18 23 23 C 1.53067 * 109.88853 * 342.41704 * 22 20 19 24 24 H 1.08997 * 109.70595 * 289.14880 * 23 22 20 25 25 C 1.53004 * 109.67027 * 168.63598 * 23 22 20 26 26 F 1.39902 * 109.47240 * 295.09949 * 25 23 22 27 27 F 1.39889 * 109.47349 * 55.10569 * 25 23 22 28 28 F 1.39908 * 109.46923 * 175.10456 * 25 23 22 29 29 H 0.96997 * 119.99869 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00038 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47418 * 299.99681 * 12 10 9 32 32 H 1.09004 * 109.46866 * 59.99916 * 12 10 9 33 33 H 0.97007 * 119.99787 * 359.97438 * 13 12 10 34 34 H 1.08999 * 109.29489 * 290.82414 * 18 16 14 35 35 H 1.08997 * 109.29792 * 50.19464 * 18 16 14 36 36 H 0.97003 * 117.95157 * 160.92155 * 19 18 16 37 37 H 1.09000 * 109.39880 * 222.29143 * 22 20 19 38 38 H 1.08998 * 109.33336 * 102.50343 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0016 10 6 1.9972 -3.5579 -0.0077 11 8 3.2101 -3.5579 -0.0127 12 6 1.2437 -4.8629 -0.0082 13 7 2.1956 -5.9765 -0.0159 14 6 1.7463 -7.2472 -0.0172 15 8 0.5539 -7.4688 -0.0126 16 6 2.7257 -8.3926 -0.0246 17 1 3.7409 -8.0063 0.0659 18 6 2.4247 -9.3324 1.1436 19 7 3.2080 -10.5561 1.0288 20 6 3.7732 -10.9788 -0.1027 21 8 4.3690 -12.0350 -0.0871 22 6 3.7116 -10.2167 -1.3953 23 6 2.5889 -9.1781 -1.3345 24 1 1.6218 -9.6802 -1.3620 25 6 2.7068 -8.2219 -2.5232 26 9 3.8941 -7.4898 -2.4168 27 9 2.7171 -8.9568 -3.7135 28 9 1.6168 -7.3448 -2.5260 29 1 -0.4850 0.8400 0.0004 30 1 0.3533 -2.3906 -0.0016 31 1 0.6207 -4.9232 0.8841 32 1 0.6133 -4.9181 -0.8958 33 1 3.1493 -5.7992 -0.0200 34 1 2.6715 -8.8331 2.0805 35 1 1.3637 -9.5823 1.1407 36 1 3.3259 -11.0969 1.8253 37 1 3.5203 -10.9091 -2.2151 38 1 4.6631 -9.7119 -1.5623 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128705084.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:49 Heat of formation + Delta-G solvation = -292.777930 kcal Electronic energy + Delta-G solvation = -30291.686353 eV Core-core repulsion = 25331.702407 eV Total energy + Delta-G solvation = -4959.983946 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.23875 -48.72143 -48.69133 -41.90086 -40.76712 -39.91102 -37.58408 -36.24521 -35.32032 -34.85282 -33.36833 -31.58966 -29.22658 -28.12121 -26.60338 -25.20544 -23.50157 -21.87454 -21.39701 -20.62190 -20.07616 -19.57667 -19.49855 -19.08578 -18.64286 -17.80722 -17.38660 -17.25472 -17.00699 -16.55692 -16.45444 -16.10940 -15.74622 -15.68672 -15.54821 -15.36898 -15.15033 -15.06420 -14.92504 -14.79412 -14.72666 -14.50855 -14.24260 -13.93377 -13.57391 -13.54793 -13.23108 -13.02036 -12.91713 -12.55332 -12.47256 -12.43741 -12.11330 -11.57119 -11.12450 -11.08317 -10.54703 -10.24972 -10.17996 -10.07386 -8.50804 -6.00467 1.32639 1.35872 1.43412 1.46518 1.53954 1.56856 1.80783 1.92135 2.20616 2.31204 2.58001 2.66501 2.84182 3.11810 3.16888 3.33372 3.40454 3.47528 3.62937 3.74749 3.89634 4.08936 4.23443 4.44371 4.45209 4.47397 4.50387 4.61141 4.76408 5.21146 5.39408 5.70640 5.92600 6.14445 6.39720 6.50042 7.03328 7.05189 7.06814 7.45564 7.95761 8.66276 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.021441 B = 0.002767 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.603165 B =10117.140111 C =10500.290962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.086 0.914 9 N -0.561 5.561 10 C 0.432 3.568 11 O -0.623 6.623 12 C 0.122 3.878 13 N -0.700 5.700 14 C 0.519 3.481 15 O -0.554 6.554 16 C -0.119 4.119 17 H 0.130 0.870 18 C 0.133 3.867 19 N -0.703 5.703 20 C 0.530 3.470 21 O -0.590 6.590 22 C -0.126 4.126 23 C -0.115 4.115 24 H 0.145 0.855 25 C 0.447 3.553 26 F -0.180 7.180 27 F -0.178 7.178 28 F -0.185 7.185 29 H 0.279 0.721 30 H 0.399 0.601 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.413 0.587 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.415 0.585 37 H 0.132 0.868 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.056 -19.245 0.153 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.818 3.182 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.104 0.896 9 N -0.196 5.196 10 C 0.219 3.781 11 O -0.511 6.511 12 C -0.005 4.005 13 N -0.354 5.354 14 C 0.305 3.695 15 O -0.432 6.432 16 C -0.141 4.141 17 H 0.148 0.852 18 C 0.008 3.992 19 N -0.355 5.355 20 C 0.318 3.682 21 O -0.471 6.471 22 C -0.166 4.166 23 C -0.135 4.135 24 H 0.162 0.838 25 C 0.393 3.607 26 F -0.162 7.162 27 F -0.159 7.159 28 F -0.167 7.167 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.252 0.748 34 H 0.135 0.865 35 H 0.111 0.889 36 H 0.253 0.747 37 H 0.151 0.849 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.123 -19.577 -0.053 19.825 hybrid contribution 0.105 1.315 -0.114 1.324 sum 3.228 -18.262 -0.167 18.546 Atomic orbital electron populations 1.69677 1.06959 1.29516 1.49475 1.26091 0.96504 1.02600 0.95890 0.84846 0.78189 0.76917 0.78254 1.19430 1.19829 1.19623 1.19752 0.92926 0.83568 1.50171 0.89609 1.41852 1.09590 1.04651 1.63509 1.20474 0.88160 0.85988 0.83441 1.90485 1.15158 1.87538 1.57917 1.20784 0.91610 0.83716 1.04425 1.45743 1.11435 1.04588 1.73631 1.20324 0.89398 0.83534 0.76266 1.90726 1.17236 1.84809 1.50467 1.21659 1.02080 0.94299 0.96048 0.85214 1.21262 0.97209 0.83379 0.97301 1.45336 1.52668 1.25356 1.12103 1.19895 0.77573 0.85008 0.85770 1.90799 1.45266 1.24893 1.86133 1.21760 0.99855 0.97723 0.97258 1.22554 1.05872 0.95243 0.89803 0.83758 1.20713 0.73688 0.81025 0.85264 1.93214 1.47586 1.79227 1.96132 1.93194 1.96180 1.76634 1.49908 1.93249 1.55395 1.71617 1.96411 0.91118 0.76719 0.87977 0.89110 0.74842 0.86525 0.88904 0.74663 0.84947 0.85395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.73 13.05 21.66 0.28 -47.45 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 3 Si 0.99 41.04 29.55 68.60 2.03 43.07 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.33 -17.99 9.68 84.04 0.81 -17.18 16 8 H 0.09 4.87 7.16 -2.91 -0.02 4.85 16 9 N -0.56 -27.12 5.29 -306.98 -1.62 -28.75 16 10 C 0.43 18.86 7.85 87.66 0.69 19.55 16 11 O -0.62 -30.66 15.24 -3.08 -0.05 -30.70 16 12 C 0.12 4.03 6.15 85.63 0.53 4.55 16 13 N -0.70 -19.39 5.51 -466.78 -2.57 -21.96 16 14 C 0.52 12.07 4.16 87.66 0.36 12.44 16 15 O -0.55 -15.72 16.23 -3.03 -0.05 -15.77 16 16 C -0.12 -1.75 1.95 -11.45 -0.02 -1.77 16 17 H 0.13 1.56 7.70 -2.39 -0.02 1.54 16 18 C 0.13 1.34 6.44 86.49 0.56 1.90 16 19 N -0.70 -7.66 5.45 -467.34 -2.55 -10.21 16 20 C 0.53 8.40 7.71 87.71 0.68 9.08 16 21 O -0.59 -14.41 17.78 -3.02 -0.05 -14.46 16 22 C -0.13 -1.55 5.02 29.71 0.15 -1.41 16 23 C -0.11 -1.65 1.93 -10.65 -0.02 -1.67 16 24 H 0.14 1.85 8.13 -2.39 -0.02 1.83 16 25 C 0.45 8.98 2.56 71.98 0.18 9.16 16 26 F -0.18 -3.88 16.26 44.97 0.73 -3.15 16 27 F -0.18 -3.49 16.84 44.97 0.76 -2.73 16 28 F -0.19 -4.91 14.72 44.97 0.66 -4.25 16 29 H 0.28 13.60 8.31 -92.71 -0.77 12.83 16 30 H 0.40 18.54 7.90 -92.71 -0.73 17.80 16 31 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.09 2.95 8.14 -2.38 -0.02 2.93 16 33 H 0.41 11.55 7.29 -92.70 -0.68 10.88 16 34 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 1.00 7.74 -2.39 -0.02 0.98 16 36 H 0.42 3.60 8.80 -92.71 -0.82 2.78 16 37 H 0.13 1.42 8.04 -2.39 -0.02 1.40 16 38 H 0.13 1.36 7.69 -2.39 -0.02 1.35 16 Total: -1.00 -70.34 339.37 0.91 -69.42 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: -1.05 Total: 32.33 kcal Atomic # 6 Polarization: 30.22 SS G_CDS: 4.38 Total: 34.60 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -6.46 Total: -108.36 kcal Atomic # 8 Polarization: -60.78 SS G_CDS: -0.15 Total: -60.93 kcal Atomic # 9 Polarization: -12.28 SS G_CDS: 2.15 Total: -10.13 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -70.34 0.91 -69.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128705084.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -223.353 kcal (2) G-P(sol) polarization free energy of solvation -70.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -293.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -292.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds