Wall clock time and date at job start Tue Mar 31 2020 19:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 119.99835 * 2 1 4 4 H 1.48504 * 109.47132 * 239.99913 * 3 2 1 5 5 H 1.48503 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47055 * 120.00120 * 3 2 1 7 7 C 1.38946 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99895 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00260 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99962 * 180.02562 * 9 7 2 11 11 O 1.21284 * 120.00196 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99808 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47409 * 180.02562 * 12 10 9 14 14 C 1.34775 * 120.00363 * 180.02562 * 13 12 10 15 15 O 1.21276 * 119.99980 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00047 * 179.97438 * 14 13 12 17 17 H 1.09006 * 109.60547 * 354.43897 * 16 14 13 18 18 C 1.52919 * 109.60320 * 233.94560 * 16 14 13 19 19 N 1.45759 * 110.48970 * 189.48966 * 18 16 14 20 20 C 1.33358 * 124.10304 * 19.05235 * 19 18 16 21 21 O 1.21281 * 118.24462 * 177.82143 * 20 19 18 22 22 C 1.50170 * 123.50925 * 357.82300 * 20 19 18 23 23 C 1.53069 * 109.89962 * 17.54441 * 22 20 19 24 24 H 1.08993 * 109.70610 * 70.86420 * 23 22 20 25 25 C 1.52998 * 109.67649 * 191.38321 * 23 22 20 26 26 F 1.39896 * 109.47659 * 184.81258 * 25 23 22 27 27 F 1.39903 * 109.47174 * 64.81202 * 25 23 22 28 28 F 1.39901 * 109.46856 * 304.81642 * 25 23 22 29 29 H 0.97003 * 120.00244 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00100 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.47485 * 60.00158 * 12 10 9 32 32 H 1.09000 * 109.47486 * 300.00113 * 12 10 9 33 33 H 0.97004 * 119.99369 * 359.97438 * 13 12 10 34 34 H 1.08999 * 109.30084 * 309.80044 * 18 16 14 35 35 H 1.09005 * 109.29801 * 69.38625 * 18 16 14 36 36 H 0.96991 * 117.94847 * 199.07976 * 19 18 16 37 37 H 1.09001 * 109.38478 * 257.41730 * 22 20 19 38 38 H 1.09006 * 109.40957 * 137.68247 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0887 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1957 -5.9765 -0.0004 14 6 1.7464 -7.2471 -0.0013 15 8 0.5541 -7.4687 -0.0022 16 6 2.7257 -8.3925 -0.0011 17 1 3.7403 -8.0063 -0.0997 18 6 2.4155 -9.3329 -1.1663 19 7 3.1998 -10.5566 -1.0571 20 6 3.7742 -10.9785 0.0700 21 8 4.3702 -12.0346 0.0501 22 6 3.7224 -10.2160 1.3627 23 6 2.5993 -9.1774 1.3103 24 1 1.6325 -9.6794 1.3457 25 6 2.7265 -8.2206 2.4974 26 9 1.6376 -7.3424 2.5075 27 9 3.9139 -7.4899 2.3823 28 9 2.7445 -8.9549 3.6881 29 1 -0.4851 0.8400 0.0004 30 1 0.3533 -2.3906 -0.0005 31 1 0.6174 -4.9205 -0.8914 32 1 0.6167 -4.9209 0.8886 33 1 3.1494 -5.7991 0.0000 34 1 1.3546 -9.5828 -1.1550 35 1 2.6585 -8.8354 -2.1053 36 1 3.3113 -11.0978 -1.8543 37 1 4.6751 -9.7113 1.5234 38 1 3.5376 -10.9080 2.1844 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128705086.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:55 Heat of formation + Delta-G solvation = -266.082598 kcal Electronic energy + Delta-G solvation = -30293.071105 eV Core-core repulsion = 25334.244756 eV Total energy + Delta-G solvation = -4958.826349 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.34996 -47.83966 -47.76555 -41.10597 -39.66619 -38.29628 -36.74138 -34.60089 -34.21076 -33.79468 -31.45857 -30.77481 -27.83757 -27.38226 -25.06316 -24.17543 -22.67865 -20.89403 -20.00600 -19.58203 -18.71006 -18.64802 -18.27702 -18.05542 -17.75348 -16.86307 -16.63322 -15.99178 -15.55084 -15.35722 -15.26748 -14.96703 -14.70096 -14.52890 -14.39821 -14.19502 -14.14595 -14.04317 -13.92750 -13.86761 -13.74143 -13.58979 -13.26218 -12.49488 -12.35830 -12.25883 -12.12830 -11.87709 -11.71438 -11.67300 -11.14251 -10.54408 -10.36368 -10.35142 -10.03449 -9.67637 -9.57098 -9.00344 -8.70602 -8.15575 -6.56248 -3.98521 2.13560 2.29561 2.34979 2.69696 3.01693 3.10256 3.18855 3.22860 3.38234 3.40639 3.65325 3.67877 4.04326 4.09211 4.15241 4.26691 4.32776 4.42918 4.67169 4.73969 4.78924 4.99564 5.04910 5.12048 5.15108 5.33754 5.78499 5.86234 5.98165 6.25371 6.45176 6.77423 7.41338 7.51864 7.70062 7.85743 8.13296 8.39299 8.99438 9.33270 9.80803 10.60422 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.021459 B = 0.002768 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.524878 B =10113.283167 C =10496.165388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.547 5.547 10 C 0.426 3.574 11 O -0.597 6.597 12 C 0.109 3.891 13 N -0.695 5.695 14 C 0.514 3.486 15 O -0.532 6.532 16 C -0.123 4.123 17 H 0.114 0.886 18 C 0.128 3.872 19 N -0.716 5.716 20 C 0.528 3.472 21 O -0.548 6.548 22 C -0.133 4.133 23 C -0.125 4.125 24 H 0.135 0.865 25 C 0.452 3.548 26 F -0.165 7.165 27 F -0.175 7.175 28 F -0.179 7.179 29 H 0.275 0.725 30 H 0.396 0.604 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.412 0.588 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.407 0.593 37 H 0.118 0.882 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 -18.595 0.258 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.181 5.181 10 C 0.212 3.788 11 O -0.484 6.484 12 C -0.019 4.019 13 N -0.348 5.348 14 C 0.297 3.703 15 O -0.409 6.409 16 C -0.145 4.145 17 H 0.132 0.868 18 C 0.003 3.997 19 N -0.369 5.369 20 C 0.315 3.685 21 O -0.425 6.425 22 C -0.173 4.173 23 C -0.145 4.145 24 H 0.153 0.847 25 C 0.398 3.602 26 F -0.147 7.147 27 F -0.156 7.156 28 F -0.160 7.160 29 H 0.085 0.915 30 H 0.230 0.770 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.251 0.749 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.244 0.756 37 H 0.136 0.864 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.927 -18.909 0.484 19.140 hybrid contribution 0.196 1.167 -0.053 1.185 sum 3.123 -17.742 0.431 18.020 Atomic orbital electron populations 1.69601 1.06027 1.28718 1.49049 1.25326 0.95665 0.99962 0.96663 0.85871 0.78798 0.80106 0.79198 1.19742 1.20826 1.19738 1.19681 0.93453 0.81974 1.48480 0.87687 1.41781 1.09485 1.04467 1.62413 1.19689 0.88298 0.84947 0.85898 1.90503 1.13645 1.86747 1.57458 1.21008 0.91743 0.85608 1.03500 1.45706 1.11907 1.04429 1.72794 1.19795 0.89092 0.83608 0.77759 1.90730 1.15897 1.84556 1.49700 1.21624 1.02496 0.95431 0.94974 0.86774 1.21235 0.97118 0.83923 0.97450 1.45431 1.53445 1.25533 1.12500 1.19709 0.78147 0.85586 0.85075 1.90807 1.43273 1.23076 1.85379 1.21772 0.99842 0.98067 0.97644 1.22554 1.04857 0.95773 0.91308 0.84690 1.20331 0.74477 0.81033 0.84344 1.93286 1.54413 1.70678 1.96281 1.93225 1.47414 1.79011 1.95993 1.93197 1.96242 1.76885 1.49708 0.91475 0.77026 0.89538 0.89534 0.74903 0.89098 0.88696 0.75596 0.86414 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.36 13.05 55.50 0.72 -22.63 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.14 29.55 -169.99 -5.02 15.11 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.31 -8.12 9.68 -14.94 -0.14 -8.26 16 8 H 0.11 2.89 7.16 -52.49 -0.38 2.52 16 9 N -0.55 -13.08 5.29 -10.97 -0.06 -13.14 16 10 C 0.43 9.29 7.85 -10.99 -0.09 9.20 16 11 O -0.60 -14.60 15.24 5.55 0.08 -14.51 16 12 C 0.11 1.84 6.15 -5.19 -0.03 1.81 16 13 N -0.70 -10.07 5.50 -61.47 -0.34 -10.41 16 14 C 0.51 6.45 4.15 -10.99 -0.05 6.40 16 15 O -0.53 -8.01 16.24 5.56 0.09 -7.92 16 16 C -0.12 -1.05 1.95 -91.63 -0.18 -1.23 16 17 H 0.11 0.84 7.70 -51.93 -0.40 0.44 16 18 C 0.13 0.83 6.44 -4.48 -0.03 0.80 16 19 N -0.72 -4.82 5.45 -61.39 -0.33 -5.15 16 20 C 0.53 4.73 7.71 -11.87 -0.09 4.64 16 21 O -0.55 -7.03 17.78 5.56 0.10 -6.93 16 22 C -0.13 -0.97 5.02 -28.10 -0.14 -1.11 16 23 C -0.12 -1.03 1.93 -90.40 -0.17 -1.20 16 24 H 0.14 1.02 8.13 -51.93 -0.42 0.60 16 25 C 0.45 4.86 2.56 37.16 0.10 4.95 16 26 F -0.17 -2.26 14.71 2.25 0.03 -2.23 16 27 F -0.18 -2.00 16.25 2.25 0.04 -1.96 16 28 F -0.18 -1.88 16.85 2.25 0.04 -1.84 16 29 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.40 9.10 7.90 -40.82 -0.32 8.78 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.41 6.00 7.29 -40.82 -0.30 5.71 16 34 H 0.09 0.63 7.73 -51.93 -0.40 0.22 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.41 2.26 8.80 -40.82 -0.36 1.90 16 37 H 0.12 0.77 7.68 -51.93 -0.40 0.37 16 38 H 0.12 0.79 8.04 -51.93 -0.42 0.37 16 LS Contribution 339.36 15.07 5.11 5.11 Total: -1.00 -32.69 339.36 -4.26 -36.95 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -3.80 Total: 12.97 kcal Atomic # 6 Polarization: 17.51 SS G_CDS: -0.93 Total: 16.59 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.01 Total: -51.34 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: 0.27 Total: -29.36 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.11 Total: -6.03 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.69 -4.26 -36.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128705086.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -229.136 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds