Wall clock time and date at job start Tue Mar 31 2020 19:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 119.99835 * 2 1 4 4 H 1.48504 * 109.47132 * 239.99913 * 3 2 1 5 5 H 1.48503 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47055 * 120.00120 * 3 2 1 7 7 C 1.38946 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99895 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00260 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99962 * 180.02562 * 9 7 2 11 11 O 1.21284 * 120.00196 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99808 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47409 * 180.02562 * 12 10 9 14 14 C 1.34775 * 120.00363 * 180.02562 * 13 12 10 15 15 O 1.21276 * 119.99980 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00047 * 179.97438 * 14 13 12 17 17 H 1.09006 * 109.60547 * 354.43897 * 16 14 13 18 18 C 1.52919 * 109.60320 * 233.94560 * 16 14 13 19 19 N 1.45759 * 110.48970 * 189.48966 * 18 16 14 20 20 C 1.33358 * 124.10304 * 19.05235 * 19 18 16 21 21 O 1.21281 * 118.24462 * 177.82143 * 20 19 18 22 22 C 1.50170 * 123.50925 * 357.82300 * 20 19 18 23 23 C 1.53069 * 109.89962 * 17.54441 * 22 20 19 24 24 H 1.08993 * 109.70610 * 70.86420 * 23 22 20 25 25 C 1.52998 * 109.67649 * 191.38321 * 23 22 20 26 26 F 1.39896 * 109.47659 * 184.81258 * 25 23 22 27 27 F 1.39903 * 109.47174 * 64.81202 * 25 23 22 28 28 F 1.39901 * 109.46856 * 304.81642 * 25 23 22 29 29 H 0.97003 * 120.00244 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00100 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.47485 * 60.00158 * 12 10 9 32 32 H 1.09000 * 109.47486 * 300.00113 * 12 10 9 33 33 H 0.97004 * 119.99369 * 359.97438 * 13 12 10 34 34 H 1.08999 * 109.30084 * 309.80044 * 18 16 14 35 35 H 1.09005 * 109.29801 * 69.38625 * 18 16 14 36 36 H 0.96991 * 117.94847 * 199.07976 * 19 18 16 37 37 H 1.09001 * 109.38478 * 257.41730 * 22 20 19 38 38 H 1.09006 * 109.40957 * 137.68247 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0887 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1957 -5.9765 -0.0004 14 6 1.7464 -7.2471 -0.0013 15 8 0.5541 -7.4687 -0.0022 16 6 2.7257 -8.3925 -0.0011 17 1 3.7403 -8.0063 -0.0997 18 6 2.4155 -9.3329 -1.1663 19 7 3.1998 -10.5566 -1.0571 20 6 3.7742 -10.9785 0.0700 21 8 4.3702 -12.0346 0.0501 22 6 3.7224 -10.2160 1.3627 23 6 2.5993 -9.1774 1.3103 24 1 1.6325 -9.6794 1.3457 25 6 2.7265 -8.2206 2.4974 26 9 1.6376 -7.3424 2.5075 27 9 3.9139 -7.4899 2.3823 28 9 2.7445 -8.9549 3.6881 29 1 -0.4851 0.8400 0.0004 30 1 0.3533 -2.3906 -0.0005 31 1 0.6174 -4.9205 -0.8914 32 1 0.6167 -4.9209 0.8886 33 1 3.1494 -5.7991 0.0000 34 1 1.3546 -9.5828 -1.1550 35 1 2.6585 -8.8354 -2.1053 36 1 3.3113 -11.0978 -1.8543 37 1 4.6751 -9.7113 1.5234 38 1 3.5376 -10.9080 2.1844 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128705086.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:55 Heat of formation + Delta-G solvation = -292.603416 kcal Electronic energy + Delta-G solvation = -30294.221134 eV Core-core repulsion = 25334.244756 eV Total energy + Delta-G solvation = -4959.976378 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.23933 -48.72282 -48.69089 -41.90104 -40.76715 -39.91119 -37.58383 -36.24442 -35.32082 -34.85301 -33.36797 -31.58866 -29.22583 -28.12191 -26.60097 -25.20412 -23.50207 -21.87479 -21.39556 -20.62160 -20.07479 -19.57731 -19.49841 -19.08479 -18.64333 -17.80574 -17.38610 -17.25106 -17.00648 -16.55651 -16.44973 -16.11416 -15.74713 -15.69081 -15.54931 -15.36929 -15.14849 -15.06424 -14.92396 -14.79413 -14.72679 -14.50715 -14.24176 -13.93127 -13.57349 -13.53436 -13.23203 -13.02005 -12.89919 -12.55376 -12.47275 -12.46098 -12.13888 -11.55239 -11.12453 -11.08337 -10.54603 -10.24944 -10.18039 -10.07446 -8.50387 -6.00310 1.32902 1.38760 1.43205 1.46499 1.53142 1.54393 1.80808 1.92590 2.20707 2.31327 2.57986 2.66456 2.84168 3.11980 3.17165 3.33420 3.40371 3.47495 3.62920 3.74750 3.89647 4.08887 4.23548 4.44418 4.45200 4.47432 4.50457 4.61082 4.76342 5.21139 5.39005 5.70660 5.92437 6.14464 6.39772 6.50202 7.03314 7.05096 7.06824 7.45637 7.95881 8.66213 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.021459 B = 0.002768 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.524878 B =10113.283167 C =10496.165388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.994 3.006 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.560 5.560 10 C 0.432 3.568 11 O -0.623 6.623 12 C 0.122 3.878 13 N -0.700 5.700 14 C 0.519 3.481 15 O -0.554 6.554 16 C -0.119 4.119 17 H 0.130 0.870 18 C 0.133 3.867 19 N -0.703 5.703 20 C 0.530 3.470 21 O -0.590 6.590 22 C -0.127 4.127 23 C -0.115 4.115 24 H 0.145 0.855 25 C 0.447 3.553 26 F -0.185 7.185 27 F -0.180 7.180 28 F -0.178 7.178 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.413 0.587 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.415 0.585 37 H 0.128 0.872 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.054 -19.219 -0.209 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.818 3.182 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.196 5.196 10 C 0.219 3.781 11 O -0.511 6.511 12 C -0.005 4.005 13 N -0.354 5.354 14 C 0.305 3.695 15 O -0.432 6.432 16 C -0.141 4.141 17 H 0.148 0.852 18 C 0.009 3.991 19 N -0.355 5.355 20 C 0.318 3.682 21 O -0.471 6.471 22 C -0.166 4.166 23 C -0.135 4.135 24 H 0.162 0.838 25 C 0.393 3.607 26 F -0.167 7.167 27 F -0.162 7.162 28 F -0.159 7.159 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.252 0.748 34 H 0.111 0.889 35 H 0.135 0.865 36 H 0.253 0.747 37 H 0.146 0.854 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.114 -19.547 -0.003 19.794 hybrid contribution 0.122 1.307 0.114 1.317 sum 3.237 -18.240 0.111 18.526 Atomic orbital electron populations 1.69666 1.06966 1.29659 1.49325 1.26087 0.96500 1.02600 0.95840 0.84966 0.77755 0.76424 0.79093 1.19398 1.19721 1.19638 1.19687 0.92958 0.83596 1.50394 0.89577 1.41840 1.09581 1.04636 1.63497 1.20468 0.88163 0.85983 0.83480 1.90480 1.15154 1.87530 1.57936 1.20784 0.91612 0.83722 1.04417 1.45741 1.11434 1.04590 1.73630 1.20318 0.89399 0.83533 0.76263 1.90724 1.17241 1.84807 1.50474 1.21660 1.02086 0.94304 0.96045 0.85212 1.21279 0.97142 0.83353 0.97362 1.45345 1.52431 1.25375 1.12330 1.19891 0.77584 0.85008 0.85760 1.90800 1.45377 1.24904 1.86018 1.21756 0.99854 0.97725 0.97269 1.22553 1.05857 0.95239 0.89822 0.83757 1.20712 0.73707 0.81033 0.85238 1.93245 1.55461 1.71545 1.96415 1.93214 1.47598 1.79299 1.96046 1.93198 1.96177 1.76670 1.49880 0.91096 0.76721 0.87988 0.89115 0.74846 0.88873 0.86533 0.74663 0.85394 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.78 13.05 21.66 0.28 -47.50 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 3 Si 0.99 41.01 29.55 68.60 2.03 43.03 16 4 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 6 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.34 -18.11 9.68 84.04 0.81 -17.30 16 8 H 0.09 4.87 7.16 -2.91 -0.02 4.84 16 9 N -0.56 -27.12 5.29 -307.00 -1.62 -28.74 16 10 C 0.43 18.86 7.85 87.66 0.69 19.54 16 11 O -0.62 -30.64 15.24 -3.04 -0.05 -30.69 16 12 C 0.12 4.03 6.15 85.63 0.53 4.56 16 13 N -0.70 -19.40 5.50 -466.79 -2.57 -21.97 16 14 C 0.52 12.08 4.15 87.66 0.36 12.45 16 15 O -0.55 -15.73 16.24 -3.02 -0.05 -15.78 16 16 C -0.12 -1.75 1.95 -11.45 -0.02 -1.77 16 17 H 0.13 1.56 7.70 -2.38 -0.02 1.54 16 18 C 0.13 1.35 6.44 86.49 0.56 1.90 16 19 N -0.70 -7.67 5.45 -467.31 -2.55 -10.21 16 20 C 0.53 8.41 7.71 87.71 0.68 9.08 16 21 O -0.59 -14.41 17.78 -3.03 -0.05 -14.47 16 22 C -0.13 -1.56 5.02 29.70 0.15 -1.41 16 23 C -0.11 -1.65 1.93 -10.65 -0.02 -1.67 16 24 H 0.14 1.85 8.13 -2.39 -0.02 1.83 16 25 C 0.45 8.98 2.56 71.98 0.18 9.17 16 26 F -0.19 -4.91 14.71 44.97 0.66 -4.25 16 27 F -0.18 -3.88 16.25 44.97 0.73 -3.15 16 28 F -0.18 -3.50 16.85 44.97 0.76 -2.74 16 29 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 30 H 0.40 18.55 7.90 -92.71 -0.73 17.82 16 31 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.09 2.95 8.14 -2.39 -0.02 2.94 16 33 H 0.41 11.56 7.29 -92.71 -0.68 10.89 16 34 H 0.09 1.01 7.73 -2.39 -0.02 0.99 16 35 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.42 3.60 8.80 -92.72 -0.82 2.78 16 37 H 0.13 1.37 7.68 -2.39 -0.02 1.35 16 38 H 0.13 1.42 8.04 -2.38 -0.02 1.40 16 Total: -1.00 -70.24 339.36 0.91 -69.33 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: -1.05 Total: 32.60 kcal Atomic # 6 Polarization: 30.15 SS G_CDS: 4.38 Total: 34.54 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -6.45 Total: -108.42 kcal Atomic # 8 Polarization: -60.78 SS G_CDS: -0.15 Total: -60.93 kcal Atomic # 9 Polarization: -12.29 SS G_CDS: 2.15 Total: -10.14 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.03 kcal Total: -70.24 0.91 -69.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128705086.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -223.278 kcal (2) G-P(sol) polarization free energy of solvation -70.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -293.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -292.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds