Wall clock time and date at job start Tue Mar 31 2020 19:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.53719 * 2 1 4 4 N 1.47309 * 110.59850 * 237.16427 * 2 1 3 5 5 C 1.34861 * 106.44087 * 241.52072 * 4 2 1 6 6 O 1.21544 * 123.72820 * 179.97438 * 5 4 2 7 7 N 1.33787 * 112.49937 * 359.87131 * 5 4 2 8 8 C 1.46507 * 124.17730 * 180.12117 * 7 5 4 9 9 C 1.50699 * 109.46910 * 269.95613 * 8 7 5 10 10 O 1.21281 * 120.00193 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99837 * 179.97438 * 9 8 7 12 12 C 1.46492 * 119.99978 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47654 * 35.00130 * 12 11 9 14 14 C 1.50705 * 109.47117 * 154.99775 * 12 11 9 15 15 H 1.07995 * 119.99996 * 0.02562 * 14 12 11 16 16 C 1.37881 * 119.99779 * 179.97438 * 14 12 11 17 17 N 1.31508 * 120.00087 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 119.99619 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47449 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47329 * 120.00257 * 18 16 14 21 21 H 1.48497 * 109.47228 * 240.00390 * 18 16 14 22 22 C 1.53002 * 109.47102 * 274.99749 * 12 11 9 23 23 F 1.39902 * 109.46815 * 60.00275 * 22 12 11 24 24 F 1.39898 * 109.47094 * 180.02562 * 22 12 11 25 25 F 1.39904 * 109.47104 * 300.00161 * 22 12 11 26 26 C 1.34767 * 111.64639 * 0.08368 * 7 5 4 27 27 O 1.21237 * 127.15808 * 180.02562 * 26 7 5 28 28 H 1.09001 * 109.47002 * 59.29893 * 1 2 3 29 29 H 1.08993 * 109.46955 * 179.30331 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.30160 * 1 2 3 31 31 H 1.09008 * 109.47157 * 60.69509 * 3 2 1 32 32 H 1.08991 * 109.47304 * 180.70259 * 3 2 1 33 33 H 1.09003 * 109.47101 * 300.70319 * 3 2 1 34 34 H 0.97001 * 126.68625 * 61.45329 * 4 2 1 35 35 H 1.08999 * 109.46913 * 29.95392 * 8 7 5 36 36 H 1.08995 * 109.47189 * 149.95687 * 8 7 5 37 37 H 0.97003 * 119.99508 * 359.97438 * 11 9 8 38 38 H 0.97003 * 119.99521 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 7 2.0483 -0.7477 -1.1586 5 6 2.7600 -1.7791 -0.6600 6 8 3.3291 -2.6023 -1.3497 7 7 2.7715 -1.7938 0.6777 8 6 3.4686 -2.7992 1.4837 9 6 2.5393 -3.9524 1.7621 10 8 1.4064 -3.9364 1.3294 11 7 2.9674 -5.0022 2.4910 12 6 2.0642 -6.1235 2.7611 13 1 1.4158 -6.2834 1.8997 14 6 2.8727 -7.3688 3.0192 15 1 3.9514 -7.3289 2.9857 16 6 2.2352 -8.5589 3.2990 17 7 0.9216 -8.6074 3.3401 18 14 3.2373 -10.1024 3.6195 19 1 4.6840 -9.7838 3.5158 20 1 2.9397 -10.6117 4.9823 21 1 2.8851 -11.1387 2.6159 22 6 1.2104 -5.8059 3.9903 23 9 0.4598 -4.6498 3.7507 24 9 0.3483 -6.8769 4.2486 25 9 2.0428 -5.6007 5.0959 26 6 2.0633 -0.7692 1.1923 27 8 1.8892 -0.5152 2.3650 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3633 -1.0275 -0.0125 30 1 -0.3633 0.5029 0.8962 31 1 1.7232 1.9495 0.8962 32 1 3.1565 1.4125 -0.0126 33 1 1.7029 1.9571 -0.8836 34 1 1.9042 -0.5386 -2.0948 35 1 4.3417 -3.1594 0.9396 36 1 3.7863 -2.3530 2.4260 37 1 3.8739 -5.0155 2.8360 38 1 0.4732 -9.4448 3.5366 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133827731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:18 Heat of formation + Delta-G solvation = -209.990831 kcal Electronic energy + Delta-G solvation = -31082.616679 eV Core-core repulsion = 26126.222651 eV Total energy + Delta-G solvation = -4956.394028 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.36094 -46.01502 -45.62619 -42.60221 -39.03034 -38.63716 -36.65859 -35.33430 -34.60355 -32.64939 -31.64575 -29.61249 -27.84466 -27.57153 -24.60251 -24.28433 -22.54681 -21.46396 -20.60457 -19.91178 -18.13566 -17.83028 -16.96907 -16.89754 -16.64446 -16.45063 -16.16341 -15.83532 -15.74849 -15.33172 -14.91319 -14.63583 -14.42933 -14.18567 -14.00934 -13.53014 -13.09154 -12.95170 -12.93969 -12.59935 -12.55681 -12.54930 -12.41265 -12.30330 -12.12724 -11.99098 -11.89191 -11.82852 -11.20739 -10.90901 -10.84867 -10.81546 -10.45016 -10.31534 -10.18696 -9.68158 -9.66746 -9.17362 -8.75534 -8.35193 -6.25610 -4.49786 1.58694 2.02272 2.91030 2.98517 3.04060 3.17827 3.24946 3.28391 3.69258 3.81570 4.19751 4.26058 4.47372 4.53702 4.88134 4.92007 5.05805 5.12409 5.17381 5.19690 5.26647 5.35726 5.42562 5.59150 5.63270 5.81907 5.84618 5.85233 6.18490 6.65838 6.87745 6.96063 7.06845 7.31059 7.42899 7.60735 8.05076 8.19855 8.46566 8.73752 9.18003 10.66113 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.021194 B = 0.003575 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.826438 B = 7831.192548 C = 8414.734718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.120 3.880 3 C -0.145 4.145 4 N -0.722 5.722 5 C 0.710 3.290 6 O -0.538 6.538 7 N -0.558 5.558 8 C 0.098 3.902 9 C 0.494 3.506 10 O -0.526 6.526 11 N -0.705 5.705 12 C 0.245 3.755 13 H 0.086 0.914 14 C -0.552 4.552 15 H 0.079 0.921 16 C 0.064 3.936 17 N -0.839 5.839 18 Si 0.917 3.083 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.417 3.583 23 F -0.217 7.217 24 F -0.136 7.136 25 F -0.209 7.209 26 C 0.535 3.465 27 O -0.459 6.459 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.438 0.562 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.401 0.599 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.433 17.427 -6.067 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.030 3.970 3 C -0.203 4.203 4 N -0.387 5.387 5 C 0.411 3.589 6 O -0.411 6.411 7 N -0.303 5.303 8 C -0.027 4.027 9 C 0.277 3.723 10 O -0.402 6.402 11 N -0.355 5.355 12 C 0.140 3.860 13 H 0.103 0.897 14 C -0.589 4.589 15 H 0.098 0.902 16 C -0.144 4.144 17 N -0.472 5.472 18 Si 0.743 3.257 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.205 1.205 22 C 0.361 3.639 23 F -0.199 7.199 24 F -0.117 7.117 25 F -0.190 7.190 26 C 0.321 3.679 27 O -0.327 6.327 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.282 0.718 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.235 0.765 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.665 16.925 -5.967 18.143 hybrid contribution 0.561 -0.788 0.273 1.005 sum 3.226 16.136 -5.694 17.413 Atomic orbital electron populations 1.22014 0.90040 1.04556 1.04060 1.21440 0.97449 0.93949 0.84207 1.21997 1.01958 0.92017 1.04358 1.45665 1.55189 1.29046 1.08850 1.15831 0.79639 0.81978 0.81499 1.91022 1.48439 1.40762 1.60839 1.45805 1.49500 1.27268 1.07745 1.21528 0.95445 0.88150 0.97590 1.20611 0.88597 0.83859 0.79239 1.90716 1.19389 1.79200 1.50891 1.45963 1.16966 1.19505 1.53108 1.19765 0.90024 0.84532 0.91700 0.89686 1.20910 0.93705 0.91059 1.53200 0.90250 1.25093 0.95325 0.99814 0.94208 1.70412 1.07314 1.26435 1.43082 0.86134 0.79991 0.81524 0.78047 1.19340 1.20559 1.20544 1.23117 0.80237 0.73476 0.87103 1.93078 1.79052 1.53249 1.94551 1.93407 1.71212 1.52509 1.94606 1.92991 1.72823 1.95080 1.58151 1.20755 0.76849 0.80335 0.89984 1.90806 1.55853 1.69449 1.16600 0.90367 0.90699 0.89812 0.89741 0.91420 0.90278 0.71754 0.85575 0.85903 0.76509 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.98 37.16 0.33 -0.97 16 2 C 0.12 1.16 1.37 -132.09 -0.18 0.98 16 3 C -0.15 -0.91 8.98 37.16 0.33 -0.58 16 4 N -0.72 -7.25 5.93 -52.85 -0.31 -7.57 16 5 C 0.71 10.35 8.63 -87.72 -0.76 9.59 16 6 O -0.54 -9.59 17.48 5.33 0.09 -9.49 16 7 N -0.56 -8.22 2.09 -121.92 -0.26 -8.47 16 8 C 0.10 1.43 6.18 -5.19 -0.03 1.39 16 9 C 0.49 9.78 7.43 -10.98 -0.08 9.69 16 10 O -0.53 -12.50 15.01 5.56 0.08 -12.42 16 11 N -0.71 -14.25 4.99 -54.93 -0.27 -14.52 16 12 C 0.25 6.12 2.21 -69.08 -0.15 5.96 16 13 H 0.09 2.39 7.58 -51.93 -0.39 2.00 16 14 C -0.55 -14.03 8.47 -34.44 -0.29 -14.33 16 15 H 0.08 1.89 7.74 -52.49 -0.41 1.49 16 16 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 17 N -0.84 -23.10 9.50 55.43 0.53 -22.58 16 18 Si 0.92 20.12 29.54 -169.99 -5.02 15.10 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 C 0.42 10.79 2.81 37.16 0.10 10.90 16 23 F -0.22 -5.64 15.68 2.25 0.04 -5.61 16 24 F -0.14 -3.81 12.91 2.25 0.03 -3.78 16 25 F -0.21 -5.16 16.94 2.25 0.04 -5.12 16 26 C 0.53 7.43 6.98 -10.56 -0.07 7.36 16 27 O -0.46 -7.47 17.76 5.59 0.10 -7.37 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.44 3.11 8.96 -40.82 -0.37 2.75 16 35 H 0.13 1.54 7.86 -51.93 -0.41 1.13 16 36 H 0.12 1.47 8.00 -51.93 -0.42 1.05 16 37 H 0.40 6.72 8.54 -40.82 -0.35 6.37 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 342.21 15.07 5.16 5.16 Total: -1.00 -35.04 342.21 -4.70 -39.74 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -4.01 Total: 5.36 kcal Atomic # 6 Polarization: 32.48 SS G_CDS: -0.89 Total: 31.59 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.32 Total: -53.14 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: 0.28 Total: -29.29 kcal Atomic # 9 Polarization: -14.61 SS G_CDS: 0.10 Total: -14.51 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.04 -4.70 -39.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133827731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.255 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds