Wall clock time and date at job start Tue Mar 31 2020 19:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.53719 * 2 1 4 4 N 1.47309 * 110.59850 * 237.16427 * 2 1 3 5 5 C 1.34861 * 106.44087 * 241.52072 * 4 2 1 6 6 O 1.21544 * 123.72820 * 179.97438 * 5 4 2 7 7 N 1.33787 * 112.49937 * 359.87131 * 5 4 2 8 8 C 1.46507 * 124.17730 * 180.12117 * 7 5 4 9 9 C 1.50699 * 109.46910 * 269.95613 * 8 7 5 10 10 O 1.21281 * 120.00193 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99837 * 179.97438 * 9 8 7 12 12 C 1.46492 * 119.99978 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47654 * 35.00130 * 12 11 9 14 14 C 1.50705 * 109.47117 * 154.99775 * 12 11 9 15 15 H 1.07995 * 119.99996 * 0.02562 * 14 12 11 16 16 C 1.37881 * 119.99779 * 179.97438 * 14 12 11 17 17 N 1.31508 * 120.00087 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 119.99619 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47449 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47329 * 120.00257 * 18 16 14 21 21 H 1.48497 * 109.47228 * 240.00390 * 18 16 14 22 22 C 1.53002 * 109.47102 * 274.99749 * 12 11 9 23 23 F 1.39902 * 109.46815 * 60.00275 * 22 12 11 24 24 F 1.39898 * 109.47094 * 180.02562 * 22 12 11 25 25 F 1.39904 * 109.47104 * 300.00161 * 22 12 11 26 26 C 1.34767 * 111.64639 * 0.08368 * 7 5 4 27 27 O 1.21237 * 127.15808 * 180.02562 * 26 7 5 28 28 H 1.09001 * 109.47002 * 59.29893 * 1 2 3 29 29 H 1.08993 * 109.46955 * 179.30331 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.30160 * 1 2 3 31 31 H 1.09008 * 109.47157 * 60.69509 * 3 2 1 32 32 H 1.08991 * 109.47304 * 180.70259 * 3 2 1 33 33 H 1.09003 * 109.47101 * 300.70319 * 3 2 1 34 34 H 0.97001 * 126.68625 * 61.45329 * 4 2 1 35 35 H 1.08999 * 109.46913 * 29.95392 * 8 7 5 36 36 H 1.08995 * 109.47189 * 149.95687 * 8 7 5 37 37 H 0.97003 * 119.99508 * 359.97438 * 11 9 8 38 38 H 0.97003 * 119.99521 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 7 2.0483 -0.7477 -1.1586 5 6 2.7600 -1.7791 -0.6600 6 8 3.3291 -2.6023 -1.3497 7 7 2.7715 -1.7938 0.6777 8 6 3.4686 -2.7992 1.4837 9 6 2.5393 -3.9524 1.7621 10 8 1.4064 -3.9364 1.3294 11 7 2.9674 -5.0022 2.4910 12 6 2.0642 -6.1235 2.7611 13 1 1.4158 -6.2834 1.8997 14 6 2.8727 -7.3688 3.0192 15 1 3.9514 -7.3289 2.9857 16 6 2.2352 -8.5589 3.2990 17 7 0.9216 -8.6074 3.3401 18 14 3.2373 -10.1024 3.6195 19 1 4.6840 -9.7838 3.5158 20 1 2.9397 -10.6117 4.9823 21 1 2.8851 -11.1387 2.6159 22 6 1.2104 -5.8059 3.9903 23 9 0.4598 -4.6498 3.7507 24 9 0.3483 -6.8769 4.2486 25 9 2.0428 -5.6007 5.0959 26 6 2.0633 -0.7692 1.1923 27 8 1.8892 -0.5152 2.3650 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3633 -1.0275 -0.0125 30 1 -0.3633 0.5029 0.8962 31 1 1.7232 1.9495 0.8962 32 1 3.1565 1.4125 -0.0126 33 1 1.7029 1.9571 -0.8836 34 1 1.9042 -0.5386 -2.0948 35 1 4.3417 -3.1594 0.9396 36 1 3.7863 -2.3530 2.4260 37 1 3.8739 -5.0155 2.8360 38 1 0.4732 -9.4448 3.5366 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133827731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:18 Heat of formation + Delta-G solvation = -237.182499 kcal Electronic energy + Delta-G solvation = -31083.795798 eV Core-core repulsion = 26126.222651 eV Total energy + Delta-G solvation = -4957.573147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.46377 -48.09966 -47.77203 -43.65478 -40.64221 -39.79033 -37.70991 -36.76126 -36.16765 -34.54606 -32.52156 -31.19236 -29.10645 -28.44021 -26.62647 -25.34501 -24.03632 -22.88797 -21.87104 -21.35422 -19.61922 -19.12247 -18.90318 -18.75318 -18.53708 -17.96116 -17.47278 -17.16722 -16.87936 -16.77778 -16.61098 -16.03130 -15.64308 -15.40551 -15.31694 -15.02024 -14.98517 -14.58608 -14.50274 -14.33853 -14.23093 -14.07226 -13.92757 -13.65762 -13.46666 -13.26441 -13.12911 -13.06971 -12.75740 -12.67978 -12.57630 -12.23676 -11.99815 -11.70731 -11.59127 -11.24787 -10.76626 -10.72707 -10.50042 -10.17510 -8.24091 -6.55243 0.51377 0.95752 1.42971 1.46001 1.48741 1.59684 1.77541 2.08822 2.22388 2.37865 2.49365 2.82388 2.91303 3.50792 3.54730 3.75163 3.77531 3.81490 3.88350 4.08721 4.13333 4.27050 4.44095 4.60463 4.66050 4.75143 4.84240 4.85880 5.09766 5.20374 5.30322 5.49309 5.61470 5.78007 5.91719 6.26555 6.49304 6.56329 7.03588 7.11130 7.22353 8.69044 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.021194 B = 0.003575 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.826438 B = 7831.192548 C = 8414.734718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.127 3.873 3 C -0.138 4.138 4 N -0.699 5.699 5 C 0.703 3.297 6 O -0.577 6.577 7 N -0.566 5.566 8 C 0.103 3.897 9 C 0.487 3.513 10 O -0.572 6.572 11 N -0.698 5.698 12 C 0.252 3.748 13 H 0.044 0.956 14 C -0.560 4.560 15 H 0.096 0.904 16 C 0.013 3.987 17 N -0.876 5.876 18 Si 0.985 3.015 19 H -0.253 1.253 20 H -0.281 1.281 21 H -0.279 1.279 22 C 0.414 3.586 23 F -0.221 7.221 24 F -0.150 7.150 25 F -0.201 7.201 26 C 0.523 3.477 27 O -0.489 6.489 28 H 0.116 0.884 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.453 0.547 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.419 0.581 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.962 18.975 -6.608 20.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.037 3.963 3 C -0.196 4.196 4 N -0.365 5.365 5 C 0.403 3.597 6 O -0.453 6.453 7 N -0.311 5.311 8 C -0.022 4.022 9 C 0.272 3.728 10 O -0.451 6.451 11 N -0.350 5.350 12 C 0.144 3.856 13 H 0.062 0.938 14 C -0.597 4.597 15 H 0.114 0.886 16 C -0.192 4.192 17 N -0.510 5.510 18 Si 0.809 3.191 19 H -0.176 1.176 20 H -0.206 1.206 21 H -0.204 1.204 22 C 0.358 3.642 23 F -0.203 7.203 24 F -0.131 7.131 25 F -0.183 7.183 26 C 0.311 3.689 27 O -0.359 6.359 28 H 0.134 0.866 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.130 0.870 34 H 0.301 0.699 35 H 0.170 0.830 36 H 0.170 0.830 37 H 0.256 0.744 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.218 18.539 -6.527 20.101 hybrid contribution 0.017 -1.213 0.443 1.291 sum 4.235 17.326 -6.083 18.845 Atomic orbital electron populations 1.22058 0.89111 1.03081 1.06201 1.21642 0.97891 0.95071 0.81707 1.22040 1.02040 0.89279 1.06231 1.45609 1.53442 1.27552 1.09885 1.16051 0.79858 0.82437 0.81311 1.90991 1.50359 1.42438 1.61507 1.45995 1.49714 1.27335 1.08064 1.21621 0.94516 0.86464 0.99560 1.21582 0.88787 0.84550 0.77835 1.90690 1.21723 1.80188 1.52456 1.45805 1.17182 1.18646 1.53348 1.19341 0.90100 0.86404 0.89715 0.93791 1.21274 0.94521 0.91186 1.52711 0.88572 1.26036 0.96255 1.03079 0.93808 1.70542 1.09083 1.27222 1.44128 0.85078 0.79172 0.77341 0.77546 1.17643 1.20643 1.20424 1.23293 0.80206 0.73009 0.87728 1.93067 1.79241 1.53351 1.94609 1.93378 1.71762 1.53253 1.94754 1.92991 1.72471 1.95010 1.57795 1.21578 0.76171 0.80304 0.90811 1.90781 1.56818 1.70257 1.18076 0.86558 0.93961 0.89353 0.89215 0.91284 0.86991 0.69897 0.82970 0.83043 0.74381 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.98 71.98 0.65 -1.65 16 2 C 0.13 2.18 1.37 2.98 0.00 2.19 16 3 C -0.14 -1.26 8.98 71.98 0.65 -0.61 16 4 N -0.70 -12.77 5.93 -439.35 -2.61 -15.37 16 5 C 0.70 19.96 8.63 179.34 1.55 21.51 16 6 O -0.58 -20.44 17.48 -3.85 -0.07 -20.51 16 7 N -0.57 -16.30 2.09 -776.90 -1.63 -17.93 16 8 C 0.10 2.91 6.18 85.63 0.53 3.43 16 9 C 0.49 19.44 7.43 87.66 0.65 20.09 16 10 O -0.57 -28.10 15.01 -3.03 -0.05 -28.14 16 11 N -0.70 -28.24 4.99 -446.10 -2.22 -30.46 16 12 C 0.25 12.82 2.21 44.25 0.10 12.91 16 13 H 0.04 2.61 7.58 -2.39 -0.02 2.59 16 14 C -0.56 -28.40 8.47 25.60 0.22 -28.19 16 15 H 0.10 4.44 7.74 -2.91 -0.02 4.42 16 16 C 0.01 0.70 5.20 84.66 0.44 1.14 16 17 N -0.88 -49.15 9.50 21.45 0.20 -48.94 16 18 Si 0.99 40.78 29.54 68.60 2.03 42.81 16 19 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 20 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 22 C 0.41 21.87 2.81 71.98 0.20 22.07 16 23 F -0.22 -11.77 15.68 44.97 0.71 -11.06 16 24 F -0.15 -8.64 12.91 44.97 0.58 -8.06 16 25 F -0.20 -9.93 16.94 44.97 0.76 -9.17 16 26 C 0.52 14.11 6.98 87.94 0.61 14.72 16 27 O -0.49 -15.72 17.76 -2.90 -0.05 -15.78 16 28 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.11 0.34 8.14 -2.39 -0.02 0.33 16 34 H 0.45 5.33 8.96 -92.71 -0.83 4.50 16 35 H 0.15 3.47 7.86 -2.39 -0.02 3.45 16 36 H 0.15 3.36 8.00 -2.39 -0.02 3.34 16 37 H 0.42 13.59 8.54 -92.71 -0.79 12.79 16 38 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -78.90 342.21 2.79 -76.12 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -0.47 Total: 18.87 kcal Atomic # 6 Polarization: 62.02 SS G_CDS: 5.60 Total: 67.62 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -6.25 Total: -112.70 kcal Atomic # 8 Polarization: -64.26 SS G_CDS: -0.16 Total: -64.42 kcal Atomic # 9 Polarization: -30.33 SS G_CDS: 2.05 Total: -28.28 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -78.90 2.79 -76.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133827731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.066 kcal (2) G-P(sol) polarization free energy of solvation -78.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds