Wall clock time and date at job start Tue Mar 31 2020 19:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.53719 * 2 1 4 4 N 1.47309 * 110.59850 * 237.16427 * 2 1 3 5 5 C 1.34861 * 106.44087 * 241.52072 * 4 2 1 6 6 O 1.21544 * 123.72820 * 179.97438 * 5 4 2 7 7 N 1.33787 * 112.49937 * 359.87131 * 5 4 2 8 8 C 1.46503 * 124.17650 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.46849 * 270.03694 * 8 7 5 10 10 O 1.21289 * 120.00104 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00002 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99907 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47589 * 325.00168 * 12 11 9 14 14 C 1.50704 * 109.47229 * 205.00034 * 12 11 9 15 15 H 1.08005 * 119.99860 * 359.97438 * 14 12 11 16 16 C 1.37876 * 119.99919 * 180.02562 * 14 12 11 17 17 N 1.31511 * 120.00149 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99709 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47503 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46903 * 119.99509 * 18 16 14 21 21 H 1.48492 * 109.47379 * 239.99389 * 18 16 14 22 22 C 1.53005 * 109.46971 * 84.99995 * 12 11 9 23 23 F 1.39899 * 109.46812 * 59.99902 * 22 12 11 24 24 F 1.39896 * 109.46898 * 179.97438 * 22 12 11 25 25 F 1.39900 * 109.47120 * 300.00129 * 22 12 11 26 26 C 1.34767 * 111.64639 * 0.08368 * 7 5 4 27 27 O 1.21237 * 127.15808 * 180.02562 * 26 7 5 28 28 H 1.09001 * 109.47002 * 59.29893 * 1 2 3 29 29 H 1.08993 * 109.46955 * 179.30331 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.30160 * 1 2 3 31 31 H 1.09008 * 109.47157 * 60.69509 * 3 2 1 32 32 H 1.08991 * 109.47304 * 180.70259 * 3 2 1 33 33 H 1.09003 * 109.47101 * 300.70319 * 3 2 1 34 34 H 0.97001 * 126.68625 * 61.45329 * 4 2 1 35 35 H 1.08990 * 109.47360 * 30.03214 * 8 7 5 36 36 H 1.09003 * 109.47348 * 150.04010 * 8 7 5 37 37 H 0.97000 * 120.00173 * 0.02562 * 11 9 8 38 38 H 0.96999 * 120.00095 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 7 2.0483 -0.7477 -1.1586 5 6 2.7600 -1.7791 -0.6600 6 8 3.3291 -2.6023 -1.3497 7 7 2.7715 -1.7938 0.6777 8 6 3.4669 -2.8004 1.4837 9 6 2.5363 -3.9529 1.7604 10 8 1.4034 -3.9351 1.3274 11 7 2.9624 -5.0031 2.4898 12 6 2.0575 -6.1232 2.7593 13 1 1.0413 -5.7483 2.8815 14 6 2.4890 -6.8253 4.0210 15 1 3.3514 -6.4727 4.5673 16 6 1.7835 -7.9185 4.4774 17 7 0.7338 -8.3483 3.8119 18 14 2.3188 -8.7892 6.0409 19 1 3.5198 -8.1153 6.5965 20 1 1.2181 -8.7399 7.0366 21 1 2.6443 -10.2048 5.7327 22 6 2.1007 -7.1068 1.5880 23 9 3.4049 -7.5881 1.4312 24 9 1.2370 -8.1768 1.8456 25 9 1.7001 -6.4550 0.4167 26 6 2.0633 -0.7692 1.1923 27 8 1.8892 -0.5152 2.3650 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3633 -1.0275 -0.0125 30 1 -0.3633 0.5029 0.8962 31 1 1.7232 1.9495 0.8962 32 1 3.1565 1.4125 -0.0126 33 1 1.7029 1.9571 -0.8836 34 1 1.9042 -0.5386 -2.0948 35 1 4.3402 -3.1610 0.9403 36 1 3.7841 -2.3551 2.4267 37 1 3.8680 -5.0169 2.8371 38 1 0.2377 -9.1176 4.1327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133827732.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:22 Heat of formation + Delta-G solvation = -209.925861 kcal Electronic energy + Delta-G solvation = -31058.751845 eV Core-core repulsion = 26102.360634 eV Total energy + Delta-G solvation = -4956.391210 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.34353 -45.99510 -45.61316 -42.60218 -39.02984 -38.63885 -36.65745 -35.33411 -34.60311 -32.65068 -31.64444 -29.61147 -27.84996 -27.57103 -24.60249 -24.27720 -22.55385 -21.45216 -20.60640 -19.91038 -18.14004 -17.82479 -16.94707 -16.88809 -16.64943 -16.49253 -16.07919 -15.84191 -15.75800 -15.35581 -14.90240 -14.62357 -14.45687 -14.18785 -13.99844 -13.52944 -13.08890 -12.95811 -12.91922 -12.60248 -12.57020 -12.52668 -12.39125 -12.29315 -12.13678 -11.98193 -11.89606 -11.81893 -11.20510 -10.90441 -10.84583 -10.81289 -10.45148 -10.31573 -10.19293 -9.68236 -9.65943 -9.17475 -8.75678 -8.35128 -6.25690 -4.49989 1.57831 2.02258 2.91257 2.99236 3.03969 3.17476 3.24668 3.28034 3.68707 3.81805 4.19491 4.25664 4.46974 4.55282 4.87935 4.92076 5.05772 5.12077 5.17117 5.19309 5.26358 5.34969 5.42234 5.59153 5.63086 5.82747 5.83681 5.86309 6.19552 6.66841 6.87534 6.96379 7.06842 7.29916 7.42547 7.60479 8.06049 8.19855 8.46268 8.73635 9.17803 10.66006 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.020396 B = 0.003561 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.503795 B = 7860.770726 C = 8395.504679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.120 3.880 3 C -0.145 4.145 4 N -0.722 5.722 5 C 0.709 3.291 6 O -0.536 6.536 7 N -0.558 5.558 8 C 0.098 3.902 9 C 0.494 3.506 10 O -0.526 6.526 11 N -0.705 5.705 12 C 0.245 3.755 13 H 0.085 0.915 14 C -0.552 4.552 15 H 0.079 0.921 16 C 0.064 3.936 17 N -0.839 5.839 18 Si 0.916 3.084 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.417 3.583 23 F -0.208 7.208 24 F -0.137 7.137 25 F -0.216 7.216 26 C 0.535 3.465 27 O -0.461 6.461 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.438 0.562 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.401 0.599 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.512 17.327 -6.227 18.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.029 3.971 3 C -0.203 4.203 4 N -0.388 5.388 5 C 0.410 3.590 6 O -0.408 6.408 7 N -0.303 5.303 8 C -0.027 4.027 9 C 0.277 3.723 10 O -0.402 6.402 11 N -0.355 5.355 12 C 0.140 3.860 13 H 0.103 0.897 14 C -0.589 4.589 15 H 0.097 0.903 16 C -0.144 4.144 17 N -0.472 5.472 18 Si 0.743 3.257 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.206 1.206 22 C 0.360 3.640 23 F -0.190 7.190 24 F -0.118 7.118 25 F -0.198 7.198 26 C 0.322 3.678 27 O -0.329 6.329 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.283 0.717 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.235 0.765 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.777 16.779 -6.213 18.107 hybrid contribution 0.580 -0.818 0.222 1.027 sum 3.357 15.961 -5.992 17.376 Atomic orbital electron populations 1.22015 0.90052 1.04542 1.04058 1.21438 0.97439 0.93948 0.84232 1.21997 1.01965 0.92017 1.04350 1.45665 1.55219 1.29049 1.08845 1.15841 0.79693 0.81981 0.81516 1.91032 1.48327 1.40652 1.60807 1.45806 1.49512 1.27198 1.07771 1.21528 0.95468 0.88130 0.97593 1.20613 0.88704 0.83912 0.79084 1.90718 1.19530 1.79520 1.50440 1.45965 1.17268 1.19286 1.53021 1.19766 0.93905 0.81575 0.90748 0.89711 1.20908 1.15765 1.15077 1.07144 0.90261 1.25093 0.94905 0.96453 0.97987 1.70412 1.16571 1.24402 1.35836 0.86137 0.78731 0.79250 0.81587 1.19347 1.20549 1.20556 1.23101 0.73037 0.84055 0.83768 1.92990 1.39958 1.89832 1.96255 1.93404 1.68920 1.57024 1.92420 1.93085 1.90897 1.81844 1.54012 1.20750 0.76800 0.80308 0.89973 1.90797 1.56013 1.69540 1.16590 0.90366 0.90704 0.89820 0.89744 0.91421 0.90283 0.71749 0.85688 0.85780 0.76507 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.98 37.16 0.33 -0.94 16 2 C 0.12 1.14 1.37 -132.09 -0.18 0.96 16 3 C -0.15 -0.90 8.98 37.16 0.33 -0.56 16 4 N -0.72 -7.36 5.93 -52.85 -0.31 -7.67 16 5 C 0.71 10.53 8.63 -87.72 -0.76 9.77 16 6 O -0.54 -9.84 17.48 5.33 0.09 -9.74 16 7 N -0.56 -8.21 2.09 -121.92 -0.26 -8.47 16 8 C 0.10 1.42 6.18 -5.19 -0.03 1.39 16 9 C 0.49 9.77 7.43 -10.98 -0.08 9.69 16 10 O -0.53 -12.50 15.01 5.55 0.08 -12.42 16 11 N -0.71 -14.25 4.99 -54.92 -0.27 -14.52 16 12 C 0.25 6.12 2.21 -69.08 -0.15 5.97 16 13 H 0.09 2.37 7.58 -51.93 -0.39 1.98 16 14 C -0.55 -14.00 8.47 -34.44 -0.29 -14.29 16 15 H 0.08 1.88 7.74 -52.48 -0.41 1.48 16 16 C 0.06 1.68 5.20 -17.82 -0.09 1.58 16 17 N -0.84 -23.08 9.50 55.43 0.53 -22.55 16 18 Si 0.92 20.06 29.54 -169.99 -5.02 15.04 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 C 0.42 10.88 2.81 37.16 0.10 10.98 16 23 F -0.21 -5.22 16.94 2.25 0.04 -5.18 16 24 F -0.14 -3.84 12.91 2.25 0.03 -3.81 16 25 F -0.22 -5.71 15.68 2.25 0.04 -5.68 16 26 C 0.54 7.29 6.98 -10.56 -0.07 7.22 16 27 O -0.46 -7.25 17.76 5.59 0.10 -7.15 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.44 3.20 8.96 -40.82 -0.37 2.83 16 35 H 0.13 1.57 7.86 -51.93 -0.41 1.17 16 36 H 0.12 1.44 8.00 -51.93 -0.42 1.02 16 37 H 0.40 6.72 8.54 -40.82 -0.35 6.37 16 38 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 LS Contribution 342.22 15.07 5.16 5.16 Total: -1.00 -35.13 342.22 -4.70 -39.83 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -4.01 Total: 5.39 kcal Atomic # 6 Polarization: 32.66 SS G_CDS: -0.89 Total: 31.77 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.32 Total: -53.21 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: 0.28 Total: -29.31 kcal Atomic # 9 Polarization: -14.77 SS G_CDS: 0.10 Total: -14.67 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.13 -4.70 -39.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133827732.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.091 kcal (2) G-P(sol) polarization free energy of solvation -35.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds