Wall clock time and date at job start Tue Mar 31 2020 19:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.53719 * 2 1 4 4 N 1.47309 * 110.59850 * 237.16427 * 2 1 3 5 5 C 1.34861 * 106.44087 * 241.52072 * 4 2 1 6 6 O 1.21544 * 123.72820 * 179.97438 * 5 4 2 7 7 N 1.33787 * 112.49937 * 359.87131 * 5 4 2 8 8 C 1.46503 * 124.17650 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.46849 * 270.03694 * 8 7 5 10 10 O 1.21289 * 120.00104 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00002 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99907 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47589 * 325.00168 * 12 11 9 14 14 C 1.50704 * 109.47229 * 205.00034 * 12 11 9 15 15 H 1.08005 * 119.99860 * 359.97438 * 14 12 11 16 16 C 1.37876 * 119.99919 * 180.02562 * 14 12 11 17 17 N 1.31511 * 120.00149 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99709 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47503 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46903 * 119.99509 * 18 16 14 21 21 H 1.48492 * 109.47379 * 239.99389 * 18 16 14 22 22 C 1.53005 * 109.46971 * 84.99995 * 12 11 9 23 23 F 1.39899 * 109.46812 * 59.99902 * 22 12 11 24 24 F 1.39896 * 109.46898 * 179.97438 * 22 12 11 25 25 F 1.39900 * 109.47120 * 300.00129 * 22 12 11 26 26 C 1.34767 * 111.64639 * 0.08368 * 7 5 4 27 27 O 1.21237 * 127.15808 * 180.02562 * 26 7 5 28 28 H 1.09001 * 109.47002 * 59.29893 * 1 2 3 29 29 H 1.08993 * 109.46955 * 179.30331 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.30160 * 1 2 3 31 31 H 1.09008 * 109.47157 * 60.69509 * 3 2 1 32 32 H 1.08991 * 109.47304 * 180.70259 * 3 2 1 33 33 H 1.09003 * 109.47101 * 300.70319 * 3 2 1 34 34 H 0.97001 * 126.68625 * 61.45329 * 4 2 1 35 35 H 1.08990 * 109.47360 * 30.03214 * 8 7 5 36 36 H 1.09003 * 109.47348 * 150.04010 * 8 7 5 37 37 H 0.97000 * 120.00173 * 0.02562 * 11 9 8 38 38 H 0.96999 * 120.00095 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 7 2.0483 -0.7477 -1.1586 5 6 2.7600 -1.7791 -0.6600 6 8 3.3291 -2.6023 -1.3497 7 7 2.7715 -1.7938 0.6777 8 6 3.4669 -2.8004 1.4837 9 6 2.5363 -3.9529 1.7604 10 8 1.4034 -3.9351 1.3274 11 7 2.9624 -5.0031 2.4898 12 6 2.0575 -6.1232 2.7593 13 1 1.0413 -5.7483 2.8815 14 6 2.4890 -6.8253 4.0210 15 1 3.3514 -6.4727 4.5673 16 6 1.7835 -7.9185 4.4774 17 7 0.7338 -8.3483 3.8119 18 14 2.3188 -8.7892 6.0409 19 1 3.5198 -8.1153 6.5965 20 1 1.2181 -8.7399 7.0366 21 1 2.6443 -10.2048 5.7327 22 6 2.1007 -7.1068 1.5880 23 9 3.4049 -7.5881 1.4312 24 9 1.2370 -8.1768 1.8456 25 9 1.7001 -6.4550 0.4167 26 6 2.0633 -0.7692 1.1923 27 8 1.8892 -0.5152 2.3650 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3633 -1.0275 -0.0125 30 1 -0.3633 0.5029 0.8962 31 1 1.7232 1.9495 0.8962 32 1 3.1565 1.4125 -0.0126 33 1 1.7029 1.9571 -0.8836 34 1 1.9042 -0.5386 -2.0948 35 1 4.3402 -3.1610 0.9403 36 1 3.7841 -2.3551 2.4267 37 1 3.8680 -5.0169 2.8371 38 1 0.2377 -9.1176 4.1327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133827732.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:21 Heat of formation + Delta-G solvation = -237.219167 kcal Electronic energy + Delta-G solvation = -31059.935371 eV Core-core repulsion = 26102.360634 eV Total energy + Delta-G solvation = -4957.574737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.46384 -48.10095 -47.77302 -43.65368 -40.64010 -39.78751 -37.70934 -36.75990 -36.16658 -34.54413 -32.52015 -31.19070 -29.10478 -28.43402 -26.62510 -25.33580 -24.04534 -22.88062 -21.87313 -21.35181 -19.62070 -19.12196 -18.88164 -18.74938 -18.55897 -17.99978 -17.37254 -17.18204 -16.92936 -16.77513 -16.61080 -16.02820 -15.63707 -15.39739 -15.31449 -15.02019 -14.98489 -14.58441 -14.50261 -14.33723 -14.22653 -14.07315 -13.92689 -13.65140 -13.46879 -13.26674 -13.12207 -13.06063 -12.75700 -12.67662 -12.57141 -12.23359 -12.00250 -11.70670 -11.58891 -11.24494 -10.76753 -10.72495 -10.49900 -10.17556 -8.23814 -6.55065 0.51589 0.95511 1.43006 1.46231 1.48837 1.59988 1.77840 2.09414 2.22443 2.38113 2.49905 2.82778 2.91532 3.50917 3.55176 3.75151 3.78120 3.81482 3.88562 4.08707 4.12698 4.28340 4.43523 4.61082 4.66738 4.75683 4.84163 4.86495 5.10301 5.20922 5.30379 5.49259 5.61610 5.77745 5.91783 6.26687 6.49492 6.56445 7.03229 7.11262 7.22500 8.69355 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.020396 B = 0.003561 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.503795 B = 7860.770726 C = 8395.504679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.126 3.874 3 C -0.138 4.138 4 N -0.700 5.700 5 C 0.701 3.299 6 O -0.578 6.578 7 N -0.566 5.566 8 C 0.103 3.897 9 C 0.487 3.513 10 O -0.572 6.572 11 N -0.698 5.698 12 C 0.252 3.748 13 H 0.046 0.954 14 C -0.560 4.560 15 H 0.097 0.903 16 C 0.013 3.987 17 N -0.876 5.876 18 Si 0.986 3.014 19 H -0.253 1.253 20 H -0.278 1.278 21 H -0.282 1.282 22 C 0.412 3.588 23 F -0.201 7.201 24 F -0.150 7.150 25 F -0.221 7.221 26 C 0.525 3.475 27 O -0.487 6.487 28 H 0.115 0.885 29 H 0.041 0.959 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.453 0.547 35 H 0.147 0.853 36 H 0.158 0.842 37 H 0.419 0.581 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.727 19.332 -5.884 20.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.036 3.964 3 C -0.196 4.196 4 N -0.366 5.366 5 C 0.402 3.598 6 O -0.455 6.455 7 N -0.311 5.311 8 C -0.022 4.022 9 C 0.272 3.728 10 O -0.451 6.451 11 N -0.350 5.350 12 C 0.145 3.855 13 H 0.063 0.937 14 C -0.596 4.596 15 H 0.115 0.885 16 C -0.192 4.192 17 N -0.510 5.510 18 Si 0.809 3.191 19 H -0.176 1.176 20 H -0.204 1.204 21 H -0.208 1.208 22 C 0.356 3.644 23 F -0.183 7.183 24 F -0.132 7.132 25 F -0.203 7.203 26 C 0.313 3.687 27 O -0.357 6.357 28 H 0.133 0.867 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.300 0.700 35 H 0.165 0.835 36 H 0.175 0.825 37 H 0.256 0.744 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.014 18.853 -5.884 20.154 hybrid contribution 0.149 -1.408 0.073 1.418 sum 4.163 17.445 -5.811 18.853 Atomic orbital electron populations 1.22059 0.89049 1.03081 1.06243 1.21660 0.97940 0.95068 0.81706 1.22040 1.02016 0.89274 1.06254 1.45621 1.53450 1.27556 1.09928 1.16086 0.79887 0.82423 0.81416 1.90997 1.50402 1.42476 1.61584 1.45991 1.49778 1.27327 1.07991 1.21624 0.94379 0.86500 0.99659 1.21585 0.88880 0.84635 0.77661 1.90692 1.21845 1.80516 1.52007 1.45807 1.17508 1.18375 1.53287 1.19350 0.93058 0.82533 0.90549 0.93673 1.21273 1.16156 1.15039 1.07163 0.88515 1.26040 0.94768 0.97264 1.01117 1.70543 1.17841 1.24943 1.37672 0.85075 0.78797 0.77744 0.77497 1.17593 1.20364 1.20752 1.23348 0.73009 0.84032 0.83994 1.92988 1.39318 1.89780 1.96244 1.93376 1.69475 1.57769 1.92532 1.93072 1.91006 1.81889 1.54372 1.21535 0.76122 0.80205 0.90806 1.90775 1.56822 1.70231 1.17911 0.86682 0.93963 0.89154 0.89076 0.91334 0.87080 0.69963 0.83508 0.82497 0.74380 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.98 71.98 0.65 -1.58 16 2 C 0.13 2.14 1.37 2.98 0.00 2.15 16 3 C -0.14 -1.22 8.98 71.98 0.65 -0.58 16 4 N -0.70 -13.06 5.93 -439.35 -2.61 -15.66 16 5 C 0.70 20.39 8.63 179.34 1.55 21.94 16 6 O -0.58 -21.26 17.48 -3.85 -0.07 -21.33 16 7 N -0.57 -16.29 2.09 -776.90 -1.63 -17.92 16 8 C 0.10 2.90 6.18 85.63 0.53 3.43 16 9 C 0.49 19.42 7.43 87.66 0.65 20.07 16 10 O -0.57 -28.08 15.01 -3.06 -0.05 -28.13 16 11 N -0.70 -28.21 4.99 -446.06 -2.22 -30.44 16 12 C 0.25 12.84 2.21 44.25 0.10 12.94 16 13 H 0.05 2.67 7.58 -2.39 -0.02 2.65 16 14 C -0.56 -28.25 8.47 25.60 0.22 -28.03 16 15 H 0.10 4.43 7.74 -2.91 -0.02 4.41 16 16 C 0.01 0.69 5.20 84.65 0.44 1.13 16 17 N -0.88 -49.10 9.50 21.45 0.20 -48.90 16 18 Si 0.99 40.60 29.54 68.60 2.03 42.63 16 19 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 20 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 21 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 22 C 0.41 22.00 2.81 71.98 0.20 22.20 16 23 F -0.20 -10.10 16.94 44.97 0.76 -9.34 16 24 F -0.15 -8.69 12.91 44.97 0.58 -8.11 16 25 F -0.22 -12.03 15.68 44.97 0.71 -11.33 16 26 C 0.52 13.80 6.98 87.94 0.61 14.42 16 27 O -0.49 -15.00 17.76 -2.90 -0.05 -15.05 16 28 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.45 5.58 8.96 -92.71 -0.83 4.75 16 35 H 0.15 3.49 7.86 -2.39 -0.02 3.47 16 36 H 0.16 3.33 8.00 -2.39 -0.02 3.31 16 37 H 0.42 13.57 8.54 -92.71 -0.79 12.78 16 38 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -79.14 342.22 2.79 -76.35 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -0.47 Total: 19.12 kcal Atomic # 6 Polarization: 62.49 SS G_CDS: 5.60 Total: 68.09 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -6.25 Total: -112.91 kcal Atomic # 8 Polarization: -64.35 SS G_CDS: -0.16 Total: -64.51 kcal Atomic # 9 Polarization: -30.82 SS G_CDS: 2.05 Total: -28.77 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -79.14 2.79 -76.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133827732.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.864 kcal (2) G-P(sol) polarization free energy of solvation -79.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds