Wall clock time and date at job start Tue Mar 31 2020 20:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.38143 * 119.85751 * 2 1 4 4 C 1.32805 * 121.84827 * 179.97438 * 3 2 1 5 5 N 1.38268 * 121.08101 * 0.06757 * 4 3 2 6 6 C 1.34475 * 134.27646 * 179.97438 * 5 4 3 7 7 C 1.50696 * 126.20271 * 359.73336 * 6 5 4 8 8 C 1.53007 * 109.46895 * 90.00377 * 7 6 5 9 9 N 1.46500 * 109.46898 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99994 * 179.97438 * 9 8 7 11 11 O 1.21278 * 119.99807 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99989 * 179.97438 * 10 9 8 13 13 S 1.81002 * 109.46986 * 180.02562 * 12 10 9 14 14 C 1.76203 * 99.99808 * 180.02562 * 13 12 10 15 15 H 1.07993 * 120.00159 * 359.97438 * 14 13 12 16 16 C 1.38800 * 119.99646 * 179.97438 * 14 13 12 17 17 N 1.31635 * 120.00170 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99595 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47213 * 60.00550 * 18 16 14 20 20 H 1.48506 * 109.47026 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47612 * 300.00133 * 18 16 14 22 22 N 1.31270 * 107.59677 * 179.97438 * 6 5 4 23 23 N 1.28801 * 110.03426 * 359.97438 * 22 6 5 24 24 C 1.31388 * 109.26554 * 0.02562 * 23 22 6 25 25 C 1.35150 * 119.85214 * 179.97438 * 2 1 3 26 26 O 1.21743 * 120.78313 * 0.02562 * 25 2 1 27 27 H 1.08999 * 109.47348 * 270.02677 * 1 2 3 28 28 H 1.09006 * 109.46522 * 30.02434 * 1 2 3 29 29 H 1.08992 * 109.47222 * 150.02196 * 1 2 3 30 30 H 1.08003 * 119.07638 * 359.97438 * 3 2 1 31 31 H 1.07996 * 119.46153 * 180.02562 * 4 3 2 32 32 H 1.09006 * 109.47398 * 209.99799 * 7 6 5 33 33 H 1.08993 * 109.47299 * 329.99836 * 7 6 5 34 34 H 1.08999 * 109.47002 * 299.99324 * 8 7 6 35 35 H 1.08998 * 109.47606 * 60.00128 * 8 7 6 36 36 H 0.97007 * 120.00118 * 359.97438 * 9 8 7 37 37 H 1.08997 * 109.47504 * 300.00386 * 12 10 9 38 38 H 1.09005 * 109.46937 * 60.00589 * 12 10 9 39 39 H 0.96994 * 119.99523 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1528 1.1981 0.0000 4 6 3.4801 1.2442 0.0005 5 7 4.2346 0.0855 -0.0003 6 6 5.5537 -0.1758 -0.0006 7 6 6.6631 0.8441 -0.0055 8 6 7.0399 1.1947 1.4354 9 7 8.1189 2.1857 1.4305 10 6 8.6158 2.6466 2.5955 11 8 8.1701 2.2404 3.6478 12 6 9.7261 3.6656 2.5906 13 16 10.1718 4.0805 4.2951 14 6 11.4515 5.2551 3.9994 15 1 11.7299 5.5069 2.9868 16 6 12.1018 5.8566 5.0680 17 7 11.7628 5.5492 6.3022 18 14 13.4589 7.1013 4.7545 19 1 12.9134 8.2433 3.9777 20 1 13.9892 7.5927 6.0517 21 1 14.5535 6.4570 3.9851 22 7 5.6998 -1.4803 -0.0009 23 7 4.5464 -2.0535 -0.0004 24 6 3.6062 -1.1358 -0.0002 25 6 2.1378 -1.1722 0.0005 26 8 1.5408 -2.2332 0.0005 27 1 -0.3634 0.0005 1.0276 28 1 -0.3632 0.8898 -0.5143 29 1 -0.3633 -0.8901 -0.5134 30 1 1.5955 2.1232 -0.0004 31 1 3.9782 2.2024 0.0009 32 1 7.5325 0.4328 -0.5186 33 1 6.3278 1.7431 -0.5225 34 1 6.1706 1.6061 1.9484 35 1 7.3753 0.2957 1.9523 36 1 8.4756 2.5103 0.5889 37 1 10.5953 3.2534 2.0781 38 1 9.3917 4.5647 2.0730 39 1 12.2175 5.9693 7.0489 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133844733.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:31 Heat of formation + Delta-G solvation = 41.959060 kcal Electronic energy + Delta-G solvation = -24946.280988 eV Core-core repulsion = 21017.714690 eV Total energy + Delta-G solvation = -3928.566298 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.16462 -40.93207 -39.29041 -38.03403 -35.85491 -35.37276 -32.96310 -32.45813 -31.00391 -30.39899 -28.86163 -27.93604 -25.54121 -24.86559 -24.33009 -23.76734 -21.60518 -20.55152 -19.47426 -19.09154 -17.92592 -17.55669 -17.41430 -16.45300 -16.33338 -16.28194 -15.67667 -15.60045 -15.08315 -14.83184 -14.62904 -14.29061 -14.05380 -13.93700 -13.68040 -13.29023 -13.11019 -12.98766 -12.59131 -12.49938 -12.41213 -12.23656 -11.70339 -11.39545 -11.22180 -11.08039 -11.06377 -11.04903 -10.80270 -9.93479 -9.85188 -9.51833 -9.10949 -9.04426 -8.78971 -8.28284 -6.54123 -6.24546 -3.95810 0.28340 0.73744 1.60320 1.66041 2.06253 2.66725 2.89463 2.99950 3.20070 3.21203 3.25088 3.27336 3.47931 3.72993 3.96602 4.03816 4.17326 4.19195 4.37659 4.42116 4.62235 4.65952 4.76424 4.92916 4.96669 5.08341 5.09444 5.10594 5.27755 5.45340 5.51521 5.57086 5.73495 5.83016 5.96902 6.07741 6.33812 6.42522 6.96065 7.54882 7.56868 7.96155 8.31822 8.49943 9.20579 10.82782 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.028405 B = 0.001794 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.503359 B =15604.569719 C =15971.102881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.536 5.536 3 C 0.095 3.905 4 C -0.030 4.030 5 N -0.386 5.386 6 C 0.210 3.790 7 C -0.047 4.047 8 C 0.127 3.873 9 N -0.739 5.739 10 C 0.533 3.467 11 O -0.514 6.514 12 C -0.153 4.153 13 S -0.060 6.060 14 C -0.537 4.537 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 N -0.266 5.266 23 N -0.204 5.204 24 C 0.103 3.897 25 C 0.596 3.404 26 O -0.479 6.479 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.189 0.811 31 H 0.186 0.814 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.400 0.600 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.175 -4.521 -18.959 29.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.257 5.257 3 C -0.025 4.025 4 C -0.148 4.148 5 N -0.072 5.072 6 C -0.055 4.055 7 C -0.087 4.087 8 C 0.001 3.999 9 N -0.395 5.395 10 C 0.319 3.681 11 O -0.387 6.387 12 C -0.304 4.304 13 S 0.167 5.833 14 C -0.685 4.685 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.745 3.255 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.199 1.199 22 N -0.109 5.109 23 N -0.050 5.050 24 C -0.159 4.159 25 C 0.383 3.617 26 O -0.348 6.348 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.206 0.794 31 H 0.203 0.797 32 H 0.134 0.866 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.234 0.766 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.648 -7.228 -16.985 29.217 hybrid contribution 0.985 2.767 -1.790 3.439 sum -21.663 -4.461 -18.775 29.012 Atomic orbital electron populations 1.22122 0.75180 1.05233 1.04184 1.45354 1.09233 1.04615 1.66524 1.21479 0.91404 0.90437 0.99164 1.21059 0.90284 0.89993 1.13495 1.43590 1.06930 1.07726 1.48968 1.24556 0.82816 0.95243 1.02878 1.20341 0.94256 0.94996 0.99092 1.21140 0.91198 0.93492 0.94056 1.45913 1.39143 1.45173 1.09257 1.20342 0.82962 0.81733 0.83047 1.90725 1.59497 1.57713 1.30790 1.23529 0.98620 0.99552 1.08665 1.85440 1.46443 1.54300 0.97166 1.22818 1.22293 1.27911 0.95477 0.90925 1.25000 0.97285 0.96879 0.94433 1.70006 1.40610 1.41513 0.98108 0.86217 0.80965 0.80567 0.77705 1.19948 1.20810 1.19915 1.74887 1.15685 1.02097 1.18274 1.74660 0.93484 1.24039 1.12795 1.24577 0.95395 0.82647 1.13299 1.16455 0.83399 0.83971 0.77909 1.90957 1.68362 1.28568 1.46939 0.90417 0.89115 0.88834 0.79371 0.79673 0.86579 0.88509 0.91473 0.90388 0.76572 0.89022 0.89125 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.18 10.42 59.85 0.62 0.80 16 2 N -0.54 -3.03 3.06 -124.90 -0.38 -3.42 16 3 C 0.10 0.27 10.24 -16.57 -0.17 0.10 16 4 C -0.03 -0.13 10.87 -16.51 -0.18 -0.31 16 5 N -0.39 -3.42 2.97 -58.39 -0.17 -3.60 16 6 C 0.21 2.07 7.37 -155.29 -1.14 0.93 16 7 C -0.05 -0.31 5.86 -27.88 -0.16 -0.47 16 8 C 0.13 1.27 5.66 -4.04 -0.02 1.25 16 9 N -0.74 -8.28 5.56 -60.29 -0.33 -8.61 16 10 C 0.53 9.20 7.85 -10.98 -0.09 9.12 16 11 O -0.51 -11.23 15.86 5.56 0.09 -11.14 16 12 C -0.15 -2.89 6.16 36.01 0.22 -2.66 16 13 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 14 C -0.54 -14.92 9.50 30.94 0.29 -14.62 16 15 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 16 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 17 N -0.87 -25.79 13.22 55.49 0.73 -25.06 16 18 Si 0.92 20.97 29.55 -169.99 -5.02 15.95 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 N -0.27 -3.59 12.23 32.73 0.40 -3.19 16 23 N -0.20 -3.00 12.28 32.34 0.40 -2.60 16 24 C 0.10 1.23 8.12 -154.31 -1.25 -0.02 16 25 C 0.60 6.25 7.66 -12.59 -0.10 6.16 16 26 O -0.48 -6.42 16.79 5.15 0.09 -6.33 16 27 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 28 H 0.09 -0.08 8.04 -51.93 -0.42 -0.50 16 29 H 0.09 0.34 7.45 -51.93 -0.39 -0.05 16 30 H 0.19 -0.35 8.05 -52.48 -0.42 -0.77 16 31 H 0.19 0.20 8.06 -52.49 -0.42 -0.22 16 32 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.40 3.02 8.47 -40.82 -0.35 2.68 16 37 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 38 H 0.09 1.53 8.14 -51.91 -0.42 1.11 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -41.18 361.80 -7.54 -48.72 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: -4.50 Total: -4.60 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -2.07 Total: 2.23 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.64 Total: -46.48 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.17 Total: -17.47 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -41.18 -7.54 -48.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133844733.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.682 kcal (2) G-P(sol) polarization free energy of solvation -41.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds