Wall clock time and date at job start Tue Mar 31 2020 20:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.38143 * 119.85751 * 2 1 4 4 C 1.32805 * 121.84827 * 179.97438 * 3 2 1 5 5 N 1.38268 * 121.08101 * 0.06757 * 4 3 2 6 6 C 1.34475 * 134.27646 * 179.97438 * 5 4 3 7 7 C 1.50696 * 126.20271 * 359.73336 * 6 5 4 8 8 C 1.53007 * 109.46895 * 90.00377 * 7 6 5 9 9 N 1.46500 * 109.46898 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99994 * 179.97438 * 9 8 7 11 11 O 1.21278 * 119.99807 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99989 * 179.97438 * 10 9 8 13 13 S 1.81002 * 109.46986 * 180.02562 * 12 10 9 14 14 C 1.76203 * 99.99808 * 180.02562 * 13 12 10 15 15 H 1.07993 * 120.00159 * 359.97438 * 14 13 12 16 16 C 1.38800 * 119.99646 * 179.97438 * 14 13 12 17 17 N 1.31635 * 120.00170 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99595 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47213 * 60.00550 * 18 16 14 20 20 H 1.48506 * 109.47026 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47612 * 300.00133 * 18 16 14 22 22 N 1.31270 * 107.59677 * 179.97438 * 6 5 4 23 23 N 1.28801 * 110.03426 * 359.97438 * 22 6 5 24 24 C 1.31388 * 109.26554 * 0.02562 * 23 22 6 25 25 C 1.35150 * 119.85214 * 179.97438 * 2 1 3 26 26 O 1.21743 * 120.78313 * 0.02562 * 25 2 1 27 27 H 1.08999 * 109.47348 * 270.02677 * 1 2 3 28 28 H 1.09006 * 109.46522 * 30.02434 * 1 2 3 29 29 H 1.08992 * 109.47222 * 150.02196 * 1 2 3 30 30 H 1.08003 * 119.07638 * 359.97438 * 3 2 1 31 31 H 1.07996 * 119.46153 * 180.02562 * 4 3 2 32 32 H 1.09006 * 109.47398 * 209.99799 * 7 6 5 33 33 H 1.08993 * 109.47299 * 329.99836 * 7 6 5 34 34 H 1.08999 * 109.47002 * 299.99324 * 8 7 6 35 35 H 1.08998 * 109.47606 * 60.00128 * 8 7 6 36 36 H 0.97007 * 120.00118 * 359.97438 * 9 8 7 37 37 H 1.08997 * 109.47504 * 300.00386 * 12 10 9 38 38 H 1.09005 * 109.46937 * 60.00589 * 12 10 9 39 39 H 0.96994 * 119.99523 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1528 1.1981 0.0000 4 6 3.4801 1.2442 0.0005 5 7 4.2346 0.0855 -0.0003 6 6 5.5537 -0.1758 -0.0006 7 6 6.6631 0.8441 -0.0055 8 6 7.0399 1.1947 1.4354 9 7 8.1189 2.1857 1.4305 10 6 8.6158 2.6466 2.5955 11 8 8.1701 2.2404 3.6478 12 6 9.7261 3.6656 2.5906 13 16 10.1718 4.0805 4.2951 14 6 11.4515 5.2551 3.9994 15 1 11.7299 5.5069 2.9868 16 6 12.1018 5.8566 5.0680 17 7 11.7628 5.5492 6.3022 18 14 13.4589 7.1013 4.7545 19 1 12.9134 8.2433 3.9777 20 1 13.9892 7.5927 6.0517 21 1 14.5535 6.4570 3.9851 22 7 5.6998 -1.4803 -0.0009 23 7 4.5464 -2.0535 -0.0004 24 6 3.6062 -1.1358 -0.0002 25 6 2.1378 -1.1722 0.0005 26 8 1.5408 -2.2332 0.0005 27 1 -0.3634 0.0005 1.0276 28 1 -0.3632 0.8898 -0.5143 29 1 -0.3633 -0.8901 -0.5134 30 1 1.5955 2.1232 -0.0004 31 1 3.9782 2.2024 0.0009 32 1 7.5325 0.4328 -0.5186 33 1 6.3278 1.7431 -0.5225 34 1 6.1706 1.6061 1.9484 35 1 7.3753 0.2957 1.9523 36 1 8.4756 2.5103 0.5889 37 1 10.5953 3.2534 2.0781 38 1 9.3917 4.5647 2.0730 39 1 12.2175 5.9693 7.0489 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133844733.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:30 Heat of formation + Delta-G solvation = 10.380350 kcal Electronic energy + Delta-G solvation = -24947.650344 eV Core-core repulsion = 21017.714690 eV Total energy + Delta-G solvation = -3929.935654 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.89624 -41.55849 -40.60568 -38.69376 -36.81425 -36.05520 -34.55622 -33.90446 -31.54313 -31.43415 -29.84739 -28.58174 -27.63204 -25.48992 -24.97078 -24.56598 -22.30148 -21.77786 -20.14245 -19.82563 -19.70144 -18.27971 -18.00751 -17.69343 -17.27605 -17.02258 -16.84960 -16.64354 -16.46512 -15.96392 -15.53083 -15.31431 -15.00971 -14.72727 -14.47689 -14.44983 -14.19477 -13.60491 -13.54156 -13.32966 -13.24428 -13.13956 -13.05396 -12.84899 -12.69362 -12.60376 -11.98409 -11.89874 -11.82881 -11.72678 -11.10094 -11.02267 -10.73894 -10.23506 -10.16975 -9.23696 -8.63704 -8.31863 -6.09718 -0.35808 0.14353 1.01763 1.10825 1.28168 1.37420 1.46231 1.50703 1.59607 1.63299 1.98432 2.21850 2.30842 2.69857 3.01528 3.02417 3.32988 3.41462 3.57766 3.73066 3.86186 4.03705 4.08606 4.18940 4.26989 4.37593 4.40715 4.47981 4.55898 4.57724 4.70491 4.82423 4.85017 4.89008 5.11546 5.35626 5.44849 5.45855 5.83516 6.22511 6.32175 6.52384 7.09623 7.15424 7.26926 8.76923 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.028405 B = 0.001794 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.503359 B =15604.569719 C =15971.102881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.524 5.524 3 C 0.112 3.888 4 C -0.057 4.057 5 N -0.374 5.374 6 C 0.209 3.791 7 C -0.031 4.031 8 C 0.131 3.869 9 N -0.706 5.706 10 C 0.535 3.465 11 O -0.568 6.568 12 C -0.128 4.128 13 S -0.158 6.158 14 C -0.544 4.544 15 H 0.086 0.914 16 C 0.011 3.989 17 N -0.912 5.912 18 Si 0.998 3.002 19 H -0.260 1.260 20 H -0.282 1.282 21 H -0.263 1.263 22 N -0.307 5.307 23 N -0.260 5.260 24 C 0.084 3.916 25 C 0.584 3.416 26 O -0.527 6.527 27 H 0.085 0.915 28 H 0.137 0.863 29 H 0.075 0.925 30 H 0.250 0.750 31 H 0.228 0.772 32 H 0.129 0.871 33 H 0.144 0.856 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.424 0.576 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.792 -0.883 -21.777 31.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.244 5.244 3 C -0.007 4.007 4 C -0.173 4.173 5 N -0.058 5.058 6 C -0.057 4.057 7 C -0.071 4.071 8 C 0.005 3.995 9 N -0.361 5.361 10 C 0.321 3.679 11 O -0.446 6.446 12 C -0.279 4.279 13 S 0.069 5.931 14 C -0.692 4.692 15 H 0.104 0.896 16 C -0.193 4.193 17 N -0.549 5.549 18 Si 0.820 3.180 19 H -0.184 1.184 20 H -0.207 1.207 21 H -0.188 1.188 22 N -0.150 5.150 23 N -0.107 5.107 24 C -0.179 4.179 25 C 0.371 3.629 26 O -0.401 6.401 27 H 0.104 0.896 28 H 0.155 0.845 29 H 0.094 0.906 30 H 0.265 0.735 31 H 0.244 0.756 32 H 0.147 0.853 33 H 0.162 0.838 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.262 0.738 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.285 -3.542 -19.883 30.823 hybrid contribution 1.004 1.654 -0.998 2.177 sum -22.281 -1.888 -20.881 30.595 Atomic orbital electron populations 1.22458 0.72986 1.06678 1.05201 1.45585 1.10594 1.04091 1.64086 1.22525 0.91352 0.90838 0.95998 1.22040 0.91018 0.89810 1.14433 1.43801 1.06651 1.08132 1.47264 1.24967 0.83914 0.94720 1.02105 1.20397 0.93835 0.95997 0.96834 1.21108 0.90301 0.91705 0.96373 1.45499 1.38297 1.43890 1.08426 1.20091 0.82582 0.81411 0.83818 1.90719 1.61202 1.59587 1.33129 1.23367 1.00121 1.01388 1.03030 1.85661 1.47285 1.55089 1.05097 1.23179 1.22157 1.27658 0.96175 0.89609 1.26138 1.00032 0.99109 0.94041 1.70185 1.42282 1.43148 0.99280 0.85009 0.77461 0.77839 0.77726 1.18403 1.20728 1.18761 1.74728 1.16037 1.04361 1.19920 1.74512 0.94586 1.26138 1.15448 1.24847 0.96106 0.83632 1.13348 1.16638 0.83003 0.85028 0.78192 1.90915 1.68905 1.30495 1.49741 0.89610 0.84457 0.90611 0.73452 0.75564 0.85288 0.83795 0.91558 0.93389 0.73784 0.87008 0.86395 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.15 10.42 127.77 1.33 1.48 16 2 N -0.52 -4.74 3.06 -667.07 -2.04 -6.78 16 3 C 0.11 0.11 10.24 82.52 0.84 0.95 16 4 C -0.06 -0.27 10.87 82.50 0.90 0.63 16 5 N -0.37 -6.08 2.97 -338.66 -1.01 -7.08 16 6 C 0.21 3.91 7.37 138.08 1.02 4.93 16 7 C -0.03 -0.31 5.86 29.85 0.17 -0.13 16 8 C 0.13 2.36 5.66 86.38 0.49 2.85 16 9 N -0.71 -13.60 5.56 -463.05 -2.57 -16.17 16 10 C 0.54 17.66 7.85 87.66 0.69 18.35 16 11 O -0.57 -25.11 15.86 -3.02 -0.05 -25.16 16 12 C -0.13 -4.58 6.16 71.24 0.44 -4.14 16 13 S -0.16 -8.49 20.57 -56.49 -1.16 -9.65 16 14 C -0.54 -30.00 9.50 67.95 0.65 -29.35 16 15 H 0.09 4.32 7.80 -2.91 -0.02 4.30 16 16 C 0.01 0.64 5.49 84.86 0.47 1.10 16 17 N -0.91 -55.29 13.22 21.65 0.29 -55.01 16 18 Si 1.00 42.40 29.55 68.60 2.03 44.43 16 19 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 20 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 22 N -0.31 -8.70 12.23 -50.37 -0.62 -9.31 16 23 N -0.26 -8.28 12.28 -51.59 -0.63 -8.91 16 24 C 0.08 2.08 8.12 135.97 1.10 3.19 16 25 C 0.58 12.58 7.66 86.45 0.66 13.24 16 26 O -0.53 -15.25 16.79 -4.49 -0.08 -15.33 16 27 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.14 -0.95 8.04 -2.38 -0.02 -0.97 16 29 H 0.08 0.50 7.45 -2.39 -0.02 0.49 16 30 H 0.25 -2.79 8.05 -2.91 -0.02 -2.82 16 31 H 0.23 -0.94 8.06 -2.91 -0.02 -0.96 16 32 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.14 0.11 8.14 -2.39 -0.02 0.10 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 35 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.42 4.36 8.47 -92.70 -0.79 3.57 16 37 H 0.11 3.57 8.14 -2.40 -0.02 3.55 16 38 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 39 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -100.90 361.80 3.24 -97.66 By element: Atomic # 1 Polarization: -2.10 SS G_CDS: 0.32 Total: -1.78 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 8.76 Total: 13.10 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -6.59 Total: -103.27 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -0.12 Total: -40.48 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -100.90 3.24 -97.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133844733.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.045 kcal (2) G-P(sol) polarization free energy of solvation -100.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds