Wall clock time and date at job start Tue Mar 31 2020 20:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 117.00133 * 2 1 4 4 O 1.20828 * 119.99922 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00371 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.47361 * 179.97438 * 5 3 2 7 7 C 1.37089 * 120.00251 * 97.08040 * 6 5 3 8 8 H 1.08005 * 120.00208 * 222.38982 * 7 6 5 9 9 C 1.38958 * 120.00039 * 42.39557 * 7 6 5 10 10 N 1.31412 * 119.99874 * 199.52485 * 9 7 6 11 11 Si 1.86793 * 119.99747 * 19.51683 * 9 7 6 12 12 H 1.48501 * 109.47674 * 268.44997 * 11 9 7 13 13 H 1.48502 * 109.47596 * 28.45172 * 11 9 7 14 14 H 1.48502 * 109.47100 * 148.45215 * 11 9 7 15 15 C 1.34784 * 119.99898 * 277.08134 * 6 5 3 16 16 O 1.21299 * 119.99974 * 354.78970 * 15 6 5 17 17 C 1.50696 * 119.99913 * 174.78980 * 15 6 5 18 18 H 1.08992 * 109.71092 * 308.75576 * 17 15 6 19 19 C 1.53481 * 109.70976 * 69.35096 * 17 15 6 20 20 O 1.43173 * 108.24058 * 179.45937 * 19 17 15 21 21 C 1.36217 * 116.71862 * 313.85768 * 20 19 17 22 22 C 1.38682 * 119.33693 * 197.06054 * 21 20 19 23 23 C 1.38165 * 120.14305 * 180.17188 * 22 21 20 24 24 C 1.38701 * 120.05530 * 359.97438 * 23 22 21 25 25 O 1.35977 * 120.00751 * 179.97438 * 24 23 22 26 26 C 1.38612 * 119.99237 * 359.94173 * 24 23 22 27 27 C 1.38688 * 120.02969 * 0.02562 * 26 24 23 28 28 O 1.36108 * 119.33712 * 180.18429 * 27 26 24 29 29 H 1.08998 * 109.47280 * 300.00568 * 1 2 3 30 30 H 1.09002 * 109.46953 * 60.00119 * 1 2 3 31 31 H 1.09004 * 109.47046 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46794 * 59.99533 * 5 3 2 33 33 H 1.08998 * 109.47104 * 300.00037 * 5 3 2 34 34 H 0.97002 * 119.99721 * 179.97438 * 10 9 7 35 35 H 1.08994 * 109.71001 * 299.14199 * 19 17 15 36 36 H 1.08993 * 109.70942 * 59.77687 * 19 17 15 37 37 H 1.07999 * 119.92892 * 0.15137 * 22 21 20 38 38 H 1.08002 * 119.97687 * 179.97438 * 23 22 21 39 39 H 0.96709 * 113.99763 * 269.98106 * 25 24 23 40 40 H 1.07997 * 119.98574 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.3159 3.2964 1.1777 8 1 3.9764 4.3023 1.3760 9 6 5.0916 2.6272 2.1166 10 7 5.0994 3.0279 3.3681 11 14 6.1230 1.1582 1.5996 12 1 5.3347 -0.0876 1.7780 13 1 6.5072 1.3007 0.1723 14 1 7.3472 1.0934 2.4377 15 6 4.0353 3.3660 -1.1590 16 8 3.8316 2.7971 -2.2107 17 6 4.3481 4.8401 -1.1478 18 1 3.6914 5.3500 -0.4430 19 6 5.8121 5.0555 -0.7404 20 8 6.0783 6.4622 -0.7524 21 6 5.6392 7.1594 -1.8371 22 6 6.1572 8.4208 -2.0894 23 6 5.7212 9.1440 -3.1829 24 6 4.7637 8.6096 -4.0322 25 8 4.3349 9.3224 -5.1078 26 6 4.2445 7.3484 -3.7849 27 6 4.6815 6.6208 -2.6881 28 8 4.1650 5.3823 -2.4606 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.9564 0.7805 -0.8892 33 1 3.9557 0.7810 0.8908 34 1 5.6406 2.5605 4.0236 35 1 5.9770 4.6588 0.2613 36 1 6.4689 4.5511 -1.4490 37 1 6.9029 8.8389 -1.4294 38 1 6.1261 10.1264 -3.3765 39 1 3.5722 9.8885 -4.9259 40 1 3.4993 6.9322 -4.4465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147601648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:23 Heat of formation + Delta-G solvation = -180.070350 kcal Electronic energy + Delta-G solvation = -29891.380822 eV Core-core repulsion = 25445.848233 eV Total energy + Delta-G solvation = -4445.532589 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.17084 -40.14437 -39.11321 -38.39038 -36.93601 -36.05395 -35.75184 -35.10428 -32.32390 -31.22987 -30.23396 -28.96319 -27.84792 -26.53777 -25.44359 -24.41555 -22.80995 -21.57079 -20.79140 -19.57542 -18.79518 -17.95364 -17.89354 -17.43363 -17.13491 -16.70504 -16.17105 -15.91171 -15.55266 -15.34921 -15.10734 -14.87633 -14.61229 -14.32683 -14.09741 -13.76529 -13.66722 -13.49136 -13.25144 -13.06410 -12.91855 -12.64297 -12.38543 -12.06903 -11.95564 -11.71371 -11.27503 -11.03124 -10.86219 -10.72635 -10.68981 -10.46203 -10.34681 -10.26354 -10.05761 -9.50227 -8.99877 -8.53768 -8.22470 -7.80025 -6.78540 -4.50908 1.25750 1.34219 2.67489 2.72172 2.80419 3.00956 3.05202 3.12478 3.31427 3.47474 3.66073 3.82551 4.10883 4.38582 4.47892 4.62282 4.94625 5.13398 5.22672 5.27301 5.30117 5.30143 5.34887 5.37163 5.48582 5.58172 5.69622 5.74478 5.77067 5.93574 6.01508 6.11210 6.27050 6.40348 6.52250 6.71200 6.88996 7.15246 7.53057 7.66719 7.67685 7.89855 8.23557 8.54358 8.87733 9.18141 10.29906 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.013766 B = 0.003932 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.502924 B = 7119.780220 C = 8567.121451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.367 6.367 3 C 0.450 3.550 4 O -0.491 6.491 5 C 0.109 3.891 6 N -0.444 5.444 7 C -0.367 4.367 8 H 0.109 0.891 9 C 0.075 3.925 10 N -0.839 5.839 11 Si 0.859 3.141 12 H -0.265 1.265 13 H -0.253 1.253 14 H -0.276 1.276 15 C 0.511 3.489 16 O -0.560 6.560 17 C 0.060 3.940 18 H 0.111 0.889 19 C 0.033 3.967 20 O -0.300 6.300 21 C 0.044 3.956 22 C -0.101 4.101 23 C -0.146 4.146 24 C 0.101 3.899 25 O -0.496 6.496 26 C -0.142 4.142 27 C 0.077 3.923 28 O -0.285 6.285 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.282 0.718 35 H 0.159 0.841 36 H 0.074 0.926 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.388 0.612 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.710 3.898 -5.999 7.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.291 3.709 4 O -0.376 6.376 5 C -0.015 4.015 6 N -0.167 5.167 7 C -0.493 4.493 8 H 0.127 0.873 9 C -0.136 4.136 10 N -0.471 5.471 11 Si 0.684 3.316 12 H -0.191 1.191 13 H -0.177 1.177 14 H -0.202 1.202 15 C 0.299 3.701 16 O -0.440 6.440 17 C 0.000 4.000 18 H 0.129 0.871 19 C -0.042 4.042 20 O -0.214 6.214 21 C -0.002 4.002 22 C -0.119 4.119 23 C -0.165 4.165 24 C 0.056 3.944 25 O -0.305 6.305 26 C -0.161 4.161 27 C 0.031 3.969 28 O -0.198 6.198 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.092 0.908 35 H 0.176 0.824 36 H 0.092 0.908 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.243 0.757 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.517 3.553 -6.554 7.473 hybrid contribution -0.300 -0.635 0.445 0.832 sum -0.817 2.918 -6.109 6.819 Atomic orbital electron populations 1.23160 0.77295 1.02971 1.02332 1.86511 1.22841 1.34246 1.84826 1.24637 0.92758 0.81301 0.72249 1.90624 1.66627 1.36301 1.44057 1.21418 0.87063 0.87547 1.05510 1.43155 1.58388 1.08535 1.06668 1.19135 1.33741 1.02985 0.93420 0.87328 1.25407 0.95864 0.97835 0.94512 1.69736 1.36118 1.40401 1.00864 0.87175 0.81156 0.82465 0.80803 1.19135 1.17667 1.20186 1.19455 0.79874 0.87099 0.83694 1.90626 1.52566 1.69858 1.30992 1.22684 0.99046 0.95045 0.83193 0.87148 1.23843 0.93743 0.78815 1.07770 1.86399 1.75573 1.21359 1.38024 1.19083 0.95956 0.94421 0.90709 1.20253 1.01016 0.92538 0.98119 1.21063 0.99946 1.00978 0.94505 1.17911 0.97067 0.90890 0.88527 1.84852 1.52175 1.60618 1.32877 1.20596 1.03033 0.94431 0.98088 1.18802 0.94513 0.86900 0.96703 1.86369 1.73873 1.27753 1.31851 0.92132 0.92251 0.88594 0.87018 0.86604 0.90779 0.82411 0.90809 0.84364 0.84801 0.75725 0.84336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.57 16 2 O -0.37 -6.48 10.56 -39.25 -0.41 -6.90 16 3 C 0.45 9.42 7.97 36.01 0.29 9.70 16 4 O -0.49 -11.60 16.00 -18.75 -0.30 -11.90 16 5 C 0.11 2.27 4.50 -5.20 -0.02 2.25 16 6 N -0.44 -10.05 1.66 -116.09 -0.19 -10.24 16 7 C -0.37 -8.61 7.02 -14.93 -0.10 -8.71 16 8 H 0.11 2.72 7.16 -52.48 -0.38 2.35 16 9 C 0.07 1.74 5.27 -17.46 -0.09 1.65 16 10 N -0.84 -20.81 13.96 55.50 0.77 -20.04 16 11 Si 0.86 17.45 25.24 -169.99 -4.29 13.16 16 12 H -0.27 -5.11 6.59 56.52 0.37 -4.74 16 13 H -0.25 -5.11 7.11 56.52 0.40 -4.71 16 14 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 15 C 0.51 11.73 6.79 -10.98 -0.07 11.65 16 16 O -0.56 -13.99 16.20 -14.08 -0.23 -14.22 16 17 C 0.06 1.23 2.67 -27.64 -0.07 1.16 16 18 H 0.11 2.28 7.41 -51.93 -0.39 1.89 16 19 C 0.03 0.63 6.36 37.41 0.24 0.87 16 20 O -0.30 -5.42 10.42 -33.21 -0.35 -5.77 16 21 C 0.04 0.75 6.49 -39.15 -0.25 0.49 16 22 C -0.10 -1.39 9.95 -39.44 -0.39 -1.78 16 23 C -0.15 -1.80 9.98 -39.44 -0.39 -2.19 16 24 C 0.10 1.34 6.70 -39.27 -0.26 1.07 16 25 O -0.50 -5.54 13.50 -19.67 -0.27 -5.81 16 26 C -0.14 -2.21 9.90 -39.28 -0.39 -2.60 16 27 C 0.08 1.38 6.49 -39.15 -0.25 1.13 16 28 O -0.29 -5.92 9.63 -47.00 -0.45 -6.37 16 29 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.11 2.15 7.57 -51.92 -0.39 1.75 16 33 H 0.12 2.32 4.02 -51.93 -0.21 2.11 16 34 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 35 H 0.16 3.03 6.11 -51.93 -0.32 2.72 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.39 2.37 9.07 45.56 0.41 2.78 16 40 H 0.14 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 345.03 15.07 5.20 5.20 Total: -1.00 -31.01 345.03 -4.63 -35.64 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -3.39 Total: 10.98 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: -0.72 Total: 16.26 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: 0.58 Total: -30.28 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -2.01 Total: -50.96 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -4.29 Total: 13.16 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.01 -4.63 -35.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147601648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.429 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds