Wall clock time and date at job start Tue Mar 31 2020 20:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 117.00133 * 2 1 4 4 O 1.20828 * 119.99922 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00371 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.47361 * 179.97438 * 5 3 2 7 7 C 1.37089 * 120.00251 * 97.08040 * 6 5 3 8 8 H 1.08005 * 120.00208 * 222.38982 * 7 6 5 9 9 C 1.38958 * 120.00039 * 42.39557 * 7 6 5 10 10 N 1.31412 * 119.99874 * 199.52485 * 9 7 6 11 11 Si 1.86793 * 119.99747 * 19.51683 * 9 7 6 12 12 H 1.48501 * 109.47674 * 268.44997 * 11 9 7 13 13 H 1.48502 * 109.47596 * 28.45172 * 11 9 7 14 14 H 1.48502 * 109.47100 * 148.45215 * 11 9 7 15 15 C 1.34784 * 119.99898 * 277.08134 * 6 5 3 16 16 O 1.21299 * 119.99974 * 354.78970 * 15 6 5 17 17 C 1.50696 * 119.99913 * 174.78980 * 15 6 5 18 18 H 1.08992 * 109.71092 * 308.75576 * 17 15 6 19 19 C 1.53481 * 109.70976 * 69.35096 * 17 15 6 20 20 O 1.43173 * 108.24058 * 179.45937 * 19 17 15 21 21 C 1.36217 * 116.71862 * 313.85768 * 20 19 17 22 22 C 1.38682 * 119.33693 * 197.06054 * 21 20 19 23 23 C 1.38165 * 120.14305 * 180.17188 * 22 21 20 24 24 C 1.38701 * 120.05530 * 359.97438 * 23 22 21 25 25 O 1.35977 * 120.00751 * 179.97438 * 24 23 22 26 26 C 1.38612 * 119.99237 * 359.94173 * 24 23 22 27 27 C 1.38688 * 120.02969 * 0.02562 * 26 24 23 28 28 O 1.36108 * 119.33712 * 180.18429 * 27 26 24 29 29 H 1.08998 * 109.47280 * 300.00568 * 1 2 3 30 30 H 1.09002 * 109.46953 * 60.00119 * 1 2 3 31 31 H 1.09004 * 109.47046 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46794 * 59.99533 * 5 3 2 33 33 H 1.08998 * 109.47104 * 300.00037 * 5 3 2 34 34 H 0.97002 * 119.99721 * 179.97438 * 10 9 7 35 35 H 1.08994 * 109.71001 * 299.14199 * 19 17 15 36 36 H 1.08993 * 109.70942 * 59.77687 * 19 17 15 37 37 H 1.07999 * 119.92892 * 0.15137 * 22 21 20 38 38 H 1.08002 * 119.97687 * 179.97438 * 23 22 21 39 39 H 0.96709 * 113.99763 * 269.98106 * 25 24 23 40 40 H 1.07997 * 119.98574 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.3159 3.2964 1.1777 8 1 3.9764 4.3023 1.3760 9 6 5.0916 2.6272 2.1166 10 7 5.0994 3.0279 3.3681 11 14 6.1230 1.1582 1.5996 12 1 5.3347 -0.0876 1.7780 13 1 6.5072 1.3007 0.1723 14 1 7.3472 1.0934 2.4377 15 6 4.0353 3.3660 -1.1590 16 8 3.8316 2.7971 -2.2107 17 6 4.3481 4.8401 -1.1478 18 1 3.6914 5.3500 -0.4430 19 6 5.8121 5.0555 -0.7404 20 8 6.0783 6.4622 -0.7524 21 6 5.6392 7.1594 -1.8371 22 6 6.1572 8.4208 -2.0894 23 6 5.7212 9.1440 -3.1829 24 6 4.7637 8.6096 -4.0322 25 8 4.3349 9.3224 -5.1078 26 6 4.2445 7.3484 -3.7849 27 6 4.6815 6.6208 -2.6881 28 8 4.1650 5.3823 -2.4606 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.9564 0.7805 -0.8892 33 1 3.9557 0.7810 0.8908 34 1 5.6406 2.5605 4.0236 35 1 5.9770 4.6588 0.2613 36 1 6.4689 4.5511 -1.4490 37 1 6.9029 8.8389 -1.4294 38 1 6.1261 10.1264 -3.3765 39 1 3.5722 9.8885 -4.9259 40 1 3.4993 6.9322 -4.4465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147601648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:23 Heat of formation + Delta-G solvation = -201.854004 kcal Electronic energy + Delta-G solvation = -29892.325432 eV Core-core repulsion = 25445.848233 eV Total energy + Delta-G solvation = -4446.477199 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.58467 -41.73580 -40.60021 -39.66282 -38.37885 -37.61889 -36.90016 -36.88039 -34.15855 -32.69650 -31.46072 -30.40034 -29.13335 -27.90891 -27.18445 -25.90968 -23.97396 -23.03069 -22.19759 -21.28653 -20.15938 -19.49621 -19.30706 -18.94922 -18.61490 -18.12128 -17.59925 -17.37862 -17.13645 -16.86678 -16.52367 -16.34851 -15.92564 -15.83686 -15.46187 -15.22524 -15.03780 -14.93449 -14.69690 -14.52320 -14.34558 -14.17254 -13.89016 -13.52772 -13.26207 -13.03441 -12.98459 -12.49051 -12.38525 -12.05080 -11.99954 -11.88879 -11.86300 -11.76012 -11.59227 -11.21410 -10.77303 -10.04401 -9.73058 -9.04541 -8.60588 -6.37851 0.11691 0.17711 1.05874 1.08183 1.19926 1.37030 1.45690 1.58299 1.79081 2.06192 2.12266 2.47688 2.62133 2.80250 3.15934 3.33120 3.55819 3.61814 3.68895 3.83610 3.92818 4.09158 4.11707 4.13819 4.26642 4.27405 4.27948 4.34360 4.61812 4.62376 4.75372 4.93679 5.08862 5.11817 5.23693 5.30770 5.47922 5.76989 5.87738 5.99688 6.26191 6.63813 6.72133 6.84925 7.04344 7.37200 8.51299 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.013766 B = 0.003932 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.502924 B = 7119.780220 C = 8567.121451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.452 3.548 4 O -0.527 6.527 5 C 0.100 3.900 6 N -0.446 5.446 7 C -0.366 4.366 8 H 0.081 0.919 9 C 0.046 3.954 10 N -0.875 5.875 11 Si 0.906 3.094 12 H -0.242 1.242 13 H -0.252 1.252 14 H -0.272 1.272 15 C 0.504 3.496 16 O -0.586 6.586 17 C 0.065 3.935 18 H 0.098 0.902 19 C 0.046 3.954 20 O -0.306 6.306 21 C 0.016 3.984 22 C -0.093 4.093 23 C -0.129 4.129 24 C 0.117 3.883 25 O -0.497 6.497 26 C -0.155 4.155 27 C 0.044 3.956 28 O -0.309 6.309 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.142 0.858 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.288 0.712 35 H 0.149 0.851 36 H 0.077 0.923 37 H 0.163 0.837 38 H 0.174 0.826 39 H 0.413 0.587 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 4.240 -6.930 8.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.294 3.706 4 O -0.416 6.416 5 C -0.024 4.024 6 N -0.168 5.168 7 C -0.493 4.493 8 H 0.099 0.901 9 C -0.162 4.162 10 N -0.509 5.509 11 Si 0.728 3.272 12 H -0.167 1.167 13 H -0.175 1.175 14 H -0.197 1.197 15 C 0.293 3.707 16 O -0.469 6.469 17 C 0.005 3.995 18 H 0.116 0.884 19 C -0.029 4.029 20 O -0.221 6.221 21 C -0.029 4.029 22 C -0.111 4.111 23 C -0.148 4.148 24 C 0.072 3.928 25 O -0.311 6.311 26 C -0.174 4.174 27 C -0.001 4.001 28 O -0.224 6.224 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.098 0.902 35 H 0.167 0.833 36 H 0.095 0.905 37 H 0.181 0.819 38 H 0.191 0.809 39 H 0.273 0.727 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.189 3.895 -7.481 8.436 hybrid contribution -0.652 -0.590 0.633 1.083 sum -0.463 3.305 -6.848 7.618 Atomic orbital electron populations 1.23576 0.74748 1.05971 1.02217 1.86482 1.25203 1.32102 1.83976 1.24574 0.92857 0.81700 0.71450 1.90612 1.67367 1.37645 1.45943 1.21590 0.87541 0.86561 1.06721 1.43177 1.58188 1.09302 1.06153 1.18884 1.34305 1.02349 0.93718 0.90133 1.25899 0.96143 1.00178 0.94013 1.69796 1.37083 1.42122 1.01899 0.86420 0.79996 0.80358 0.80456 1.16720 1.17522 1.19699 1.19835 0.79408 0.88003 0.83419 1.90583 1.53950 1.70646 1.31713 1.22485 0.99966 0.93562 0.83478 0.88417 1.23596 0.92523 0.79733 1.07062 1.86353 1.75873 1.20730 1.39128 1.19446 0.96990 0.95706 0.90741 1.20631 1.00725 0.90994 0.98743 1.21466 0.98414 1.01982 0.92895 1.17955 0.96434 0.90012 0.88436 1.84795 1.53530 1.60741 1.32019 1.20778 1.03506 0.95472 0.97623 1.19150 0.96042 0.86514 0.98404 1.86307 1.74965 1.29615 1.31489 0.92296 0.92443 0.83998 0.85350 0.85642 0.90199 0.83311 0.90460 0.81907 0.80891 0.72714 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.91 16 2 O -0.36 -12.30 10.56 -51.39 -0.54 -12.84 16 3 C 0.45 18.94 7.97 71.24 0.57 19.51 16 4 O -0.53 -25.52 16.00 21.96 0.35 -25.16 16 5 C 0.10 4.13 4.50 85.63 0.39 4.52 16 6 N -0.45 -20.68 1.66 -639.58 -1.06 -21.74 16 7 C -0.37 -17.81 7.02 84.04 0.59 -17.22 16 8 H 0.08 4.31 7.16 -2.91 -0.02 4.29 16 9 C 0.05 2.17 5.27 84.93 0.45 2.61 16 10 N -0.88 -44.08 13.96 21.67 0.30 -43.78 16 11 Si 0.91 35.11 25.24 68.60 1.73 36.84 16 12 H -0.24 -8.51 6.59 99.48 0.66 -7.86 16 13 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 14 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 15 C 0.50 24.08 6.79 87.65 0.59 24.68 16 16 O -0.59 -30.21 16.20 15.67 0.25 -29.95 16 17 C 0.06 2.83 2.67 30.01 0.08 2.91 16 18 H 0.10 4.40 7.41 -2.39 -0.02 4.38 16 19 C 0.05 1.82 6.36 72.14 0.46 2.28 16 20 O -0.31 -11.37 10.42 -83.81 -0.87 -12.24 16 21 C 0.02 0.55 6.49 22.55 0.15 0.69 16 22 C -0.09 -2.34 9.95 22.36 0.22 -2.12 16 23 C -0.13 -2.72 9.98 22.36 0.22 -2.49 16 24 C 0.12 2.81 6.70 22.47 0.15 2.96 16 25 O -0.50 -9.44 13.50 -93.29 -1.26 -10.70 16 26 C -0.15 -4.75 9.90 22.47 0.22 -4.53 16 27 C 0.04 1.62 6.49 22.55 0.15 1.77 16 28 O -0.31 -13.51 9.63 -69.03 -0.66 -14.18 16 29 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 30 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 31 H 0.14 2.32 8.14 -2.38 -0.02 2.30 16 32 H 0.13 4.84 7.57 -2.38 -0.02 4.83 16 33 H 0.13 4.88 4.02 -2.39 -0.01 4.87 16 34 H 0.29 13.33 8.31 -92.71 -0.77 12.56 16 35 H 0.15 6.03 6.11 -2.39 -0.01 6.02 16 36 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 38 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 39 H 0.41 3.52 9.07 -74.05 -0.67 2.85 16 40 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -69.18 345.03 4.07 -65.11 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.40 Total: 31.19 kcal Atomic # 6 Polarization: 32.03 SS G_CDS: 5.43 Total: 37.47 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: -0.76 Total: -65.52 kcal Atomic # 8 Polarization: -102.35 SS G_CDS: -2.74 Total: -105.08 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 1.73 Total: 36.84 kcal Total: -69.18 4.07 -65.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147601648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.747 kcal (2) G-P(sol) polarization free energy of solvation -69.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds