Wall clock time and date at job start Tue Mar 31 2020 20:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00247 * 2 1 4 4 O 1.20823 * 119.99643 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00201 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.46703 * 180.02562 * 5 3 2 7 7 C 1.37093 * 120.00024 * 90.00755 * 6 5 3 8 8 H 1.08000 * 119.99845 * 215.34701 * 7 6 5 9 9 C 1.38949 * 120.00509 * 35.06555 * 7 6 5 10 10 N 1.31408 * 120.00148 * 204.36506 * 9 7 6 11 11 Si 1.86800 * 119.99668 * 24.36618 * 9 7 6 12 12 H 1.48497 * 109.47163 * 3.67626 * 11 9 7 13 13 H 1.48504 * 109.46958 * 123.67712 * 11 9 7 14 14 H 1.48505 * 109.47138 * 243.67168 * 11 9 7 15 15 C 1.34779 * 119.99993 * 269.99714 * 6 5 3 16 16 O 1.21290 * 119.99871 * 354.22977 * 15 6 5 17 17 C 1.50701 * 120.00068 * 174.23277 * 15 6 5 18 18 H 1.09000 * 109.70585 * 43.63642 * 17 15 6 19 19 C 1.53458 * 109.70901 * 283.04671 * 17 15 6 20 20 O 1.43178 * 108.23641 * 180.55969 * 19 17 15 21 21 C 1.36209 * 116.70087 * 46.23388 * 20 19 17 22 22 C 1.38682 * 119.33516 * 162.74371 * 21 20 19 23 23 C 1.38177 * 120.13904 * 179.86330 * 22 21 20 24 24 C 1.38695 * 120.05412 * 359.96837 * 23 22 21 25 25 O 1.35982 * 119.99965 * 180.02562 * 24 23 22 26 26 C 1.38606 * 119.99475 * 0.07800 * 24 23 22 27 27 C 1.38686 * 120.03180 * 0.02794 * 26 24 23 28 28 O 1.36111 * 119.34490 * 179.67215 * 27 26 24 29 29 H 1.08994 * 109.47422 * 60.00220 * 1 2 3 30 30 H 1.09001 * 109.47214 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47033 * 299.99772 * 1 2 3 32 32 H 1.09003 * 109.47138 * 59.99817 * 5 3 2 33 33 H 1.08993 * 109.46983 * 300.00128 * 5 3 2 34 34 H 0.97003 * 119.99808 * 179.97438 * 10 9 7 35 35 H 1.08997 * 109.71552 * 300.24522 * 19 17 15 36 36 H 1.09004 * 109.71408 * 60.83193 * 19 17 15 37 37 H 1.08003 * 119.93140 * 359.84472 * 22 21 20 38 38 H 1.08000 * 119.97055 * 179.97438 * 23 22 21 39 39 H 0.96706 * 113.99441 * 90.00862 * 25 24 23 40 40 H 1.08001 * 119.98244 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.1766 3.3362 1.1878 8 1 3.9216 4.3821 1.2748 9 6 4.6969 2.6548 2.2812 10 7 4.4544 3.0842 3.4992 11 14 5.7411 1.1281 2.0197 12 1 5.9384 0.9067 0.5646 13 1 7.0605 1.3125 2.6758 14 1 5.0545 -0.0485 2.6109 15 6 4.1723 3.3267 -1.1667 16 8 4.1025 2.7202 -2.2148 17 6 4.4721 4.8036 -1.1692 18 1 5.2024 5.0317 -0.3929 19 6 3.1817 5.5940 -0.9144 20 8 3.4996 6.9899 -0.9363 21 6 4.2851 7.4227 -1.9615 22 6 4.3364 8.7775 -2.2530 23 6 5.1300 9.2351 -3.2875 24 6 5.8783 8.3398 -4.0372 25 8 6.6593 8.7913 -5.0547 26 6 5.8293 6.9847 -3.7498 27 6 5.0317 6.5234 -2.7133 28 8 4.9888 5.1892 -2.4475 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9558 0.7808 -0.8908 33 1 3.9564 0.7805 0.8891 34 1 4.8173 2.6082 4.2625 35 1 2.4535 5.3706 -1.6941 36 1 2.7719 5.3250 0.0592 37 1 3.7546 9.4765 -1.6704 38 1 5.1675 10.2907 -3.5124 39 1 7.5611 9.0170 -4.7879 40 1 6.4125 6.2878 -4.3334 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147601649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:26 Heat of formation + Delta-G solvation = -197.165093 kcal Electronic energy + Delta-G solvation = -29884.727992 eV Core-core repulsion = 25438.454119 eV Total energy + Delta-G solvation = -4446.273873 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.60519 -41.73288 -40.59916 -39.67665 -38.40154 -37.62706 -36.90389 -36.86377 -34.16243 -32.72756 -31.46839 -30.46072 -29.15380 -27.94665 -27.16732 -25.99053 -23.98286 -23.02956 -22.24843 -21.20166 -20.22342 -19.56394 -19.19855 -19.04376 -18.66964 -18.13195 -17.58994 -17.39327 -17.14357 -17.01347 -16.55480 -16.29264 -15.90944 -15.73799 -15.51920 -15.27329 -15.03591 -14.90620 -14.78180 -14.52234 -14.44132 -14.16468 -13.86237 -13.52432 -13.33990 -13.01573 -12.86774 -12.58342 -12.44061 -12.07938 -11.97251 -11.87668 -11.84390 -11.70418 -11.59261 -11.28406 -10.77238 -10.10713 -9.72591 -9.06069 -8.64231 -6.28999 0.10902 0.17858 1.02929 1.10370 1.21632 1.32025 1.41345 1.42217 1.90093 1.98520 2.09652 2.46893 2.58774 2.84092 3.11137 3.33098 3.53275 3.59553 3.66779 3.81768 3.85167 4.04872 4.09787 4.13536 4.26138 4.28856 4.29644 4.33772 4.42355 4.63836 4.74044 4.93290 5.03302 5.10424 5.23949 5.30721 5.47146 5.72165 5.85896 5.98964 6.23466 6.64730 6.70763 6.86044 7.05463 7.36393 8.48204 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.014663 B = 0.003650 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.125301 B = 7668.414372 C = 8285.259594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.450 3.550 4 O -0.519 6.519 5 C 0.112 3.888 6 N -0.441 5.441 7 C -0.369 4.369 8 H 0.094 0.906 9 C 0.039 3.961 10 N -0.872 5.872 11 Si 0.905 3.095 12 H -0.249 1.249 13 H -0.273 1.273 14 H -0.251 1.251 15 C 0.497 3.503 16 O -0.589 6.589 17 C 0.061 3.939 18 H 0.114 0.886 19 C 0.053 3.947 20 O -0.306 6.306 21 C 0.013 3.987 22 C -0.092 4.092 23 C -0.130 4.130 24 C 0.119 3.881 25 O -0.497 6.497 26 C -0.153 4.153 27 C 0.047 3.953 28 O -0.306 6.306 29 H 0.059 0.941 30 H 0.141 0.859 31 H 0.058 0.942 32 H 0.131 0.869 33 H 0.109 0.891 34 H 0.286 0.714 35 H 0.071 0.929 36 H 0.132 0.868 37 H 0.162 0.838 38 H 0.173 0.827 39 H 0.414 0.586 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.916 4.408 -7.313 8.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.292 3.708 4 O -0.407 6.407 5 C -0.012 4.012 6 N -0.162 5.162 7 C -0.495 4.495 8 H 0.112 0.888 9 C -0.169 4.169 10 N -0.506 5.506 11 Si 0.727 3.273 12 H -0.172 1.172 13 H -0.199 1.199 14 H -0.176 1.176 15 C 0.286 3.714 16 O -0.473 6.473 17 C 0.002 3.998 18 H 0.131 0.869 19 C -0.024 4.024 20 O -0.221 6.221 21 C -0.032 4.032 22 C -0.110 4.110 23 C -0.149 4.149 24 C 0.074 3.926 25 O -0.311 6.311 26 C -0.172 4.172 27 C 0.002 3.998 28 O -0.220 6.220 29 H 0.078 0.922 30 H 0.159 0.841 31 H 0.077 0.923 32 H 0.149 0.851 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.149 0.851 37 H 0.180 0.820 38 H 0.191 0.809 39 H 0.274 0.726 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.137 4.242 -7.899 8.967 hybrid contribution 0.490 -0.860 0.869 1.317 sum 0.627 3.382 -7.029 7.826 Atomic orbital electron populations 1.23580 0.74646 1.05959 1.02321 1.86481 1.25274 1.32131 1.84004 1.24494 0.92670 0.81835 0.71790 1.90598 1.67168 1.37405 1.45493 1.21377 0.87604 0.86399 1.05828 1.43192 1.58151 1.09327 1.05552 1.19063 1.45848 0.97659 0.86901 0.88818 1.25854 0.96095 1.00928 0.94033 1.69850 1.39510 1.42272 0.98991 0.86394 0.80262 0.80195 0.80431 1.17224 1.19939 1.17568 1.19641 0.79894 0.88370 0.83457 1.90581 1.55840 1.68631 1.32226 1.22577 0.98460 0.93593 0.85184 0.86853 1.23316 0.94593 0.78736 1.05706 1.86334 1.65739 1.24906 1.45115 1.19432 0.95842 0.95024 0.92862 1.20623 1.00771 0.91159 0.98484 1.21465 0.97616 1.01659 0.94114 1.17956 0.95850 0.89403 0.89435 1.84798 1.28382 1.85747 1.32150 1.20779 1.01204 0.96922 0.98322 1.19138 0.99007 0.82540 0.99118 1.86286 1.80208 1.20627 1.34926 0.92189 0.84124 0.92301 0.85096 0.87360 0.90368 0.91094 0.85055 0.82028 0.80914 0.72635 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.56 113.37 1.20 1.90 16 2 O -0.36 -12.25 10.57 -51.39 -0.54 -12.79 16 3 C 0.45 18.64 8.02 71.24 0.57 19.21 16 4 O -0.52 -24.24 16.18 21.97 0.36 -23.89 16 5 C 0.11 4.70 4.47 85.63 0.38 5.08 16 6 N -0.44 -20.55 1.70 -639.61 -1.09 -21.64 16 7 C -0.37 -18.22 8.64 84.04 0.73 -17.49 16 8 H 0.09 4.89 5.75 -2.91 -0.02 4.87 16 9 C 0.04 1.89 5.28 84.93 0.45 2.34 16 10 N -0.87 -45.09 13.96 21.66 0.30 -44.79 16 11 Si 0.90 36.59 25.10 68.60 1.72 38.31 16 12 H -0.25 -9.82 6.40 99.48 0.64 -9.18 16 13 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 14 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 15 C 0.50 23.55 6.93 87.66 0.61 24.15 16 16 O -0.59 -30.06 16.14 15.32 0.25 -29.82 16 17 C 0.06 2.64 2.59 30.00 0.08 2.72 16 18 H 0.11 4.88 7.32 -2.39 -0.02 4.86 16 19 C 0.05 2.11 6.33 72.14 0.46 2.56 16 20 O -0.31 -11.42 10.42 -83.71 -0.87 -12.29 16 21 C 0.01 0.44 6.49 22.55 0.15 0.59 16 22 C -0.09 -2.31 9.96 22.36 0.22 -2.09 16 23 C -0.13 -2.69 9.98 22.36 0.22 -2.47 16 24 C 0.12 2.77 6.70 22.47 0.15 2.92 16 25 O -0.50 -9.10 13.50 -93.34 -1.26 -10.36 16 26 C -0.15 -4.56 9.90 22.46 0.22 -4.34 16 27 C 0.05 1.70 6.49 22.55 0.15 1.85 16 28 O -0.31 -13.03 9.66 -69.26 -0.67 -13.70 16 29 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 30 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 32 H 0.13 5.09 7.35 -2.39 -0.02 5.07 16 33 H 0.11 4.33 3.40 -2.39 -0.01 4.32 16 34 H 0.29 13.60 8.31 -92.71 -0.77 12.83 16 35 H 0.07 2.86 8.14 -2.39 -0.02 2.85 16 36 H 0.13 5.46 6.51 -2.38 -0.02 5.44 16 37 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 38 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.41 3.21 9.06 -74.05 -0.67 2.54 16 40 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -68.82 344.63 4.16 -64.66 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.39 Total: 29.37 kcal Atomic # 6 Polarization: 31.36 SS G_CDS: 5.58 Total: 36.94 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -0.79 Total: -66.43 kcal Atomic # 8 Polarization: -100.10 SS G_CDS: -2.74 Total: -102.85 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 1.72 Total: 38.31 kcal Total: -68.82 4.16 -64.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147601649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.501 kcal (2) G-P(sol) polarization free energy of solvation -68.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds