Wall clock time and date at job start Tue Mar 31 2020 20:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45201 * 109.46895 * 2 1 4 4 C 1.34226 * 117.00054 * 180.02562 * 3 2 1 5 5 O 1.20834 * 119.99912 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00490 * 180.02562 * 4 3 2 7 7 N 1.46901 * 109.47334 * 183.77729 * 6 4 3 8 8 C 1.46896 * 110.99838 * 64.24597 * 7 6 4 9 9 C 1.50700 * 109.47453 * 71.66055 * 8 7 6 10 10 H 1.08003 * 119.99565 * 355.48617 * 9 8 7 11 11 C 1.37877 * 119.99739 * 175.48247 * 9 8 7 12 12 N 1.31518 * 119.99592 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00335 * 0.02562 * 11 9 8 14 14 H 1.48492 * 109.47179 * 89.99500 * 13 11 9 15 15 H 1.48502 * 109.46948 * 209.99882 * 13 11 9 16 16 H 1.48498 * 109.47117 * 329.99448 * 13 11 9 17 17 C 1.38395 * 111.00018 * 300.28853 * 7 6 4 18 18 N 1.32379 * 119.81495 * 109.16599 * 17 7 6 19 19 C 1.31996 * 121.75884 * 180.02562 * 18 17 7 20 20 Cl 1.73598 * 119.40167 * 179.97438 * 19 18 17 21 21 C 1.38533 * 121.18863 * 359.72292 * 19 18 17 22 22 C 1.38279 * 119.49313 * 0.57835 * 21 19 18 23 23 C 1.50704 * 120.80768 * 179.71355 * 22 21 19 24 24 C 1.40022 * 118.38481 * 359.43795 * 22 21 19 25 25 C 1.43199 * 120.59996 * 180.29776 * 24 22 21 26 26 N 6.63138 * 120.54686 * 27.66969 * 2 1 3 27 27 H 1.08996 * 109.46896 * 60.00063 * 1 2 3 28 28 H 1.08994 * 109.47025 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46889 * 299.99844 * 1 2 3 30 30 H 1.08994 * 109.47078 * 240.00243 * 2 1 3 31 31 H 1.08996 * 109.46896 * 119.99937 * 2 1 3 32 32 H 1.08997 * 109.47192 * 63.77182 * 6 4 3 33 33 H 1.09005 * 109.47063 * 303.77615 * 6 4 3 34 34 H 1.09001 * 109.46332 * 191.66021 * 8 7 6 35 35 H 1.09000 * 109.47146 * 311.65098 * 8 7 6 36 36 H 0.97002 * 119.99920 * 179.97438 * 12 11 9 37 37 H 1.08002 * 120.25204 * 180.28893 * 21 19 18 38 38 H 1.09001 * 109.46973 * 269.71733 * 23 22 21 39 39 H 1.09005 * 109.47315 * 149.72439 * 23 22 21 40 40 H 1.08996 * 109.47685 * 29.71787 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3849 2.8618 -0.0920 8 6 5.8022 2.2716 -1.3708 9 6 5.5448 3.2532 -2.4849 10 1 5.0479 4.1891 -2.2759 11 6 5.9438 2.9565 -3.7709 12 7 5.7188 3.8130 -4.7433 13 14 6.8028 1.3376 -4.1324 14 1 5.7909 0.3058 -4.4736 15 1 7.7334 1.5156 -5.2759 16 1 7.5670 0.9046 -2.9350 17 6 5.9131 2.1569 0.9755 18 7 6.4285 0.9535 0.7791 19 6 6.9418 0.2475 1.7693 20 17 7.6010 -1.3249 1.4426 21 6 6.9687 0.7409 3.0635 22 6 6.4380 1.9904 3.3269 23 6 6.4459 2.5532 4.7248 24 6 5.8985 2.7224 2.2621 25 6 5.3423 4.0238 2.4801 26 7 4.9004 5.0579 2.6521 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6404 3.4463 0.9223 33 1 3.5312 3.4921 -0.8537 34 1 6.8658 2.0363 -1.3323 35 1 5.2345 1.3589 -1.5522 36 1 5.9998 3.6045 -5.6480 37 1 7.3967 0.1523 3.8615 38 1 5.5278 2.2660 5.2373 39 1 6.5112 3.6404 4.6785 40 1 7.3043 2.1606 5.2699 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157151160.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:44 Heat of formation + Delta-G solvation = -0.313086 kcal Electronic energy + Delta-G solvation = -27501.989852 eV Core-core repulsion = 23537.254039 eV Total energy + Delta-G solvation = -3964.735813 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.20113 -39.98585 -37.53498 -36.82597 -36.25509 -35.75628 -33.79266 -32.66025 -31.78025 -30.67751 -28.99287 -28.08455 -26.75363 -24.07901 -23.10808 -22.58563 -21.35289 -20.11486 -18.90409 -17.89761 -17.26532 -17.19029 -16.52290 -16.28562 -15.81700 -15.37990 -15.08837 -14.39155 -14.15075 -13.97728 -13.92155 -13.49070 -13.23929 -13.17304 -13.11604 -12.92034 -12.79767 -12.55359 -12.43475 -12.27354 -12.05754 -11.73591 -11.55552 -11.48062 -11.37325 -11.26881 -10.82933 -10.70298 -10.48614 -10.34962 -9.89053 -9.78259 -9.62799 -9.45026 -9.08005 -8.62981 -7.97914 -6.12839 -4.13010 0.45444 1.04617 1.76434 2.45685 2.74298 2.82324 2.98483 3.30609 3.37112 3.46876 3.62835 3.82168 3.92301 4.36108 4.40030 4.72024 4.85210 4.87930 4.91422 4.93026 5.02817 5.17419 5.22635 5.26548 5.26941 5.32163 5.50751 5.61052 5.66358 5.74280 5.76178 5.88621 5.91866 6.08446 6.49199 6.59249 6.86148 7.25202 7.30425 7.52719 7.65585 7.87693 8.01260 8.44649 8.89725 9.46976 10.99024 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.007722 B = 0.005542 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3624.945729 B = 5051.547670 C = 5739.181727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.360 6.360 4 C 0.428 3.572 5 O -0.480 6.480 6 C 0.075 3.925 7 N -0.444 5.444 8 C 0.158 3.842 9 C -0.527 4.527 10 H 0.082 0.918 11 C 0.078 3.922 12 N -0.894 5.894 13 Si 0.868 3.132 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.258 1.258 17 C 0.391 3.609 18 N -0.470 5.470 19 C 0.232 3.768 20 Cl -0.030 7.030 21 C -0.193 4.193 22 C 0.029 3.971 23 C -0.120 4.120 24 C -0.106 4.106 25 C 0.272 3.728 26 N -0.410 5.410 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.147 0.853 34 H 0.047 0.953 35 H 0.030 0.970 36 H 0.266 0.734 37 H 0.150 0.850 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.126 -9.118 18.058 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.276 6.276 4 C 0.268 3.732 5 O -0.366 6.366 6 C -0.053 4.053 7 N -0.160 5.160 8 C 0.034 3.966 9 C -0.565 4.565 10 H 0.100 0.900 11 C -0.125 4.125 12 N -0.531 5.531 13 Si 0.695 3.305 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.182 1.182 17 C 0.157 3.843 18 N -0.185 5.185 19 C 0.063 3.937 20 Cl -0.002 7.002 21 C -0.215 4.215 22 C 0.018 3.982 23 C -0.176 4.176 24 C -0.114 4.114 25 C -0.044 4.044 26 N -0.086 5.086 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.164 0.836 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.168 0.832 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.375 -7.770 17.183 19.158 hybrid contribution 0.608 -1.993 -0.016 2.084 sum -2.767 -9.763 17.167 19.942 Atomic orbital electron populations 1.21790 0.92867 1.02651 1.03479 1.22950 0.95125 0.80765 1.02402 1.86517 1.24867 1.31999 1.84237 1.25056 0.80931 0.94200 0.73032 1.90784 1.59434 1.42552 1.43802 1.22076 0.85412 0.90780 1.07051 1.59697 1.06049 1.45910 1.04293 1.20530 0.97952 0.95299 0.82815 1.20985 1.40192 1.04786 0.90523 0.89966 1.24767 0.95171 0.96633 0.95944 1.69882 1.46896 1.35512 1.00860 0.86937 0.80471 0.84387 0.78710 1.20145 1.21088 1.18238 1.19847 0.90361 0.85019 0.89118 1.67359 1.11900 1.04800 1.34420 1.21717 0.93254 0.89089 0.89662 1.98407 1.82719 1.22661 1.96395 1.21400 1.06862 0.96956 0.96301 1.20067 0.90937 0.92053 0.95117 1.20914 1.03834 1.01795 0.91089 1.16466 1.10171 0.90854 0.93956 1.24964 0.93663 0.92270 0.93474 1.81301 1.09119 1.10324 1.07859 0.91329 0.90531 0.91684 0.91204 0.91702 0.87724 0.83570 0.93464 0.95242 0.92455 0.83190 0.89577 0.90660 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 37.16 0.38 -1.07 16 2 C 0.06 0.81 6.19 37.16 0.23 1.04 16 3 O -0.36 -5.75 10.22 -39.25 -0.40 -6.15 16 4 C 0.43 7.76 7.20 36.00 0.26 8.02 16 5 O -0.48 -9.67 11.50 -18.76 -0.22 -9.89 16 6 C 0.07 1.35 5.55 -4.98 -0.03 1.32 16 7 N -0.44 -9.14 4.25 -175.67 -0.75 -9.89 16 8 C 0.16 3.84 2.80 -4.98 -0.01 3.82 16 9 C -0.53 -14.52 9.16 -34.44 -0.32 -14.84 16 10 H 0.08 2.40 7.60 -52.48 -0.40 2.00 16 11 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 12 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 13 Si 0.87 21.85 27.56 -169.99 -4.68 17.17 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 16 H -0.26 -6.43 6.41 56.52 0.36 -6.06 16 17 C 0.39 7.18 4.75 -155.09 -0.74 6.45 16 18 N -0.47 -8.86 7.01 -9.28 -0.07 -8.92 16 19 C 0.23 3.51 7.27 -17.37 -0.13 3.38 16 20 Cl -0.03 -0.42 29.10 -51.86 -1.51 -1.93 16 21 C -0.19 -2.21 9.55 -39.46 -0.38 -2.59 16 22 C 0.03 0.33 5.95 -103.94 -0.62 -0.29 16 23 C -0.12 -0.93 9.68 36.01 0.35 -0.59 16 24 C -0.11 -1.59 5.66 -106.43 -0.60 -2.19 16 25 C 0.27 4.18 11.51 -22.42 -0.26 3.92 16 26 N -0.41 -6.74 18.55 41.90 0.78 -5.96 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 31 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 32 H 0.10 1.66 6.19 -51.93 -0.32 1.34 16 33 H 0.15 2.74 7.08 -51.93 -0.37 2.37 16 34 H 0.05 1.21 6.33 -51.93 -0.33 0.89 16 35 H 0.03 0.75 5.40 -51.93 -0.28 0.47 16 36 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.64 7.19 -51.93 -0.37 0.27 16 40 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -32.75 356.88 -7.27 -40.02 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -4.62 Total: -2.26 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -1.95 Total: 8.53 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 0.74 Total: -50.87 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.62 Total: -16.03 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.68 Total: 17.17 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.51 Total: -1.93 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.75 -7.27 -40.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157151160.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.711 kcal (2) G-P(sol) polarization free energy of solvation -32.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds