Wall clock time and date at job start Tue Mar 31 2020 20:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45201 * 109.46895 * 2 1 4 4 C 1.34226 * 117.00054 * 180.02562 * 3 2 1 5 5 O 1.20834 * 119.99912 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00490 * 180.02562 * 4 3 2 7 7 N 1.46901 * 109.47334 * 183.77729 * 6 4 3 8 8 C 1.46896 * 110.99838 * 64.24597 * 7 6 4 9 9 C 1.50700 * 109.47453 * 71.66055 * 8 7 6 10 10 H 1.08003 * 119.99565 * 355.48617 * 9 8 7 11 11 C 1.37877 * 119.99739 * 175.48247 * 9 8 7 12 12 N 1.31518 * 119.99592 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00335 * 0.02562 * 11 9 8 14 14 H 1.48492 * 109.47179 * 89.99500 * 13 11 9 15 15 H 1.48502 * 109.46948 * 209.99882 * 13 11 9 16 16 H 1.48498 * 109.47117 * 329.99448 * 13 11 9 17 17 C 1.38395 * 111.00018 * 300.28853 * 7 6 4 18 18 N 1.32379 * 119.81495 * 109.16599 * 17 7 6 19 19 C 1.31996 * 121.75884 * 180.02562 * 18 17 7 20 20 Cl 1.73598 * 119.40167 * 179.97438 * 19 18 17 21 21 C 1.38533 * 121.18863 * 359.72292 * 19 18 17 22 22 C 1.38279 * 119.49313 * 0.57835 * 21 19 18 23 23 C 1.50704 * 120.80768 * 179.71355 * 22 21 19 24 24 C 1.40022 * 118.38481 * 359.43795 * 22 21 19 25 25 C 1.43199 * 120.59996 * 180.29776 * 24 22 21 26 26 N 6.63138 * 120.54686 * 27.66969 * 2 1 3 27 27 H 1.08996 * 109.46896 * 60.00063 * 1 2 3 28 28 H 1.08994 * 109.47025 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46889 * 299.99844 * 1 2 3 30 30 H 1.08994 * 109.47078 * 240.00243 * 2 1 3 31 31 H 1.08996 * 109.46896 * 119.99937 * 2 1 3 32 32 H 1.08997 * 109.47192 * 63.77182 * 6 4 3 33 33 H 1.09005 * 109.47063 * 303.77615 * 6 4 3 34 34 H 1.09001 * 109.46332 * 191.66021 * 8 7 6 35 35 H 1.09000 * 109.47146 * 311.65098 * 8 7 6 36 36 H 0.97002 * 119.99920 * 179.97438 * 12 11 9 37 37 H 1.08002 * 120.25204 * 180.28893 * 21 19 18 38 38 H 1.09001 * 109.46973 * 269.71733 * 23 22 21 39 39 H 1.09005 * 109.47315 * 149.72439 * 23 22 21 40 40 H 1.08996 * 109.47685 * 29.71787 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3849 2.8618 -0.0920 8 6 5.8022 2.2716 -1.3708 9 6 5.5448 3.2532 -2.4849 10 1 5.0479 4.1891 -2.2759 11 6 5.9438 2.9565 -3.7709 12 7 5.7188 3.8130 -4.7433 13 14 6.8028 1.3376 -4.1324 14 1 5.7909 0.3058 -4.4736 15 1 7.7334 1.5156 -5.2759 16 1 7.5670 0.9046 -2.9350 17 6 5.9131 2.1569 0.9755 18 7 6.4285 0.9535 0.7791 19 6 6.9418 0.2475 1.7693 20 17 7.6010 -1.3249 1.4426 21 6 6.9687 0.7409 3.0635 22 6 6.4380 1.9904 3.3269 23 6 6.4459 2.5532 4.7248 24 6 5.8985 2.7224 2.2621 25 6 5.3423 4.0238 2.4801 26 7 4.9004 5.0579 2.6521 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6404 3.4463 0.9223 33 1 3.5312 3.4921 -0.8537 34 1 6.8658 2.0363 -1.3323 35 1 5.2345 1.3589 -1.5522 36 1 5.9998 3.6045 -5.6480 37 1 7.3967 0.1523 3.8615 38 1 5.5278 2.2660 5.2373 39 1 6.5112 3.6404 4.6785 40 1 7.3043 2.1606 5.2699 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157151160.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:43 Heat of formation + Delta-G solvation = -20.629541 kcal Electronic energy + Delta-G solvation = -27502.870840 eV Core-core repulsion = 23537.254039 eV Total energy + Delta-G solvation = -3965.616801 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.51954 -41.25622 -38.85972 -37.99377 -37.44124 -37.14556 -34.99793 -34.67396 -32.79051 -31.99627 -30.58270 -29.06462 -28.32987 -25.23041 -24.40058 -24.04491 -22.66043 -21.51765 -20.11793 -19.45625 -18.80528 -18.47649 -18.05519 -17.67040 -17.10642 -16.74170 -16.37198 -16.15214 -15.51138 -15.30653 -15.06372 -14.72264 -14.55259 -14.40434 -14.23240 -13.95602 -13.90319 -13.77448 -13.62332 -13.58022 -13.27152 -13.01135 -12.88647 -12.77228 -12.62911 -12.51816 -12.46378 -12.28696 -12.00229 -11.85276 -11.66607 -11.55164 -10.94278 -10.78580 -10.65784 -10.43697 -9.39404 -8.35342 -6.38598 -0.69537 -0.00958 0.67153 1.03327 1.28677 1.30931 1.44730 1.51807 1.57742 1.77516 2.28335 2.31156 2.61547 2.73939 2.99467 3.33881 3.58039 3.64676 3.77287 3.94209 3.95657 3.99706 4.06276 4.25450 4.29785 4.35063 4.47022 4.73639 4.76263 4.79163 4.88790 4.90662 4.99345 5.03821 5.09570 5.28941 5.35549 5.39456 5.47506 5.82931 6.30750 6.35930 6.58017 6.64270 6.70357 7.24579 8.79865 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.007722 B = 0.005542 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3624.945729 B = 5051.547670 C = 5739.181727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.430 3.570 5 O -0.500 6.500 6 C 0.076 3.924 7 N -0.459 5.459 8 C 0.183 3.817 9 C -0.525 4.525 10 H 0.053 0.947 11 C 0.027 3.973 12 N -0.934 5.934 13 Si 0.927 3.073 14 H -0.272 1.272 15 H -0.275 1.275 16 H -0.256 1.256 17 C 0.365 3.635 18 N -0.512 5.512 19 C 0.212 3.788 20 Cl -0.025 7.025 21 C -0.166 4.166 22 C 0.045 3.955 23 C -0.118 4.118 24 C -0.109 4.109 25 C 0.284 3.716 26 N -0.432 5.432 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.032 0.968 35 H 0.017 0.983 36 H 0.269 0.731 37 H 0.196 0.804 38 H 0.107 0.893 39 H 0.068 0.932 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.831 -10.929 21.143 23.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.271 3.729 5 O -0.387 6.387 6 C -0.052 4.052 7 N -0.175 5.175 8 C 0.058 3.942 9 C -0.563 4.563 10 H 0.072 0.928 11 C -0.172 4.172 12 N -0.574 5.574 13 Si 0.752 3.248 14 H -0.197 1.197 15 H -0.201 1.201 16 H -0.180 1.180 17 C 0.131 3.869 18 N -0.227 5.227 19 C 0.045 3.955 20 Cl 0.004 6.996 21 C -0.187 4.187 22 C 0.035 3.965 23 C -0.174 4.174 24 C -0.118 4.118 25 C -0.030 4.030 26 N -0.108 5.108 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.050 0.950 35 H 0.035 0.965 36 H 0.078 0.922 37 H 0.214 0.786 38 H 0.125 0.875 39 H 0.087 0.913 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.089 -9.592 20.303 22.666 hybrid contribution 0.472 -1.465 -0.834 1.750 sum -2.617 -11.056 19.470 22.542 Atomic orbital electron populations 1.21816 0.89935 1.04487 1.03746 1.23284 0.97380 0.79173 1.02165 1.86513 1.23574 1.33979 1.83695 1.24939 0.81535 0.93799 0.72617 1.90766 1.60062 1.43049 1.44847 1.22042 0.84749 0.91126 1.07284 1.59585 1.07303 1.47049 1.03574 1.19966 0.96649 0.93688 0.83908 1.21215 1.38987 1.04301 0.91822 0.92839 1.25514 0.96055 0.99731 0.95920 1.69995 1.48553 1.37479 1.01403 0.86002 0.79611 0.80545 0.78678 1.19733 1.20066 1.17999 1.19748 0.92032 0.85670 0.89436 1.67143 1.13329 1.05536 1.36683 1.22119 0.93669 0.89275 0.90480 1.98405 1.82575 1.22129 1.96529 1.21870 1.04444 0.96666 0.95730 1.20555 0.88544 0.91437 0.96004 1.21086 1.06372 1.01333 0.88648 1.16562 1.10705 0.90807 0.93704 1.25014 0.93096 0.92153 0.92779 1.81313 1.09915 1.10884 1.08713 0.91721 0.87861 0.90730 0.92459 0.90977 0.85728 0.85158 0.94999 0.96491 0.92187 0.78649 0.87485 0.91323 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 10.29 71.98 0.74 -1.76 16 2 C 0.05 1.37 6.19 71.98 0.45 1.81 16 3 O -0.36 -11.59 10.22 -51.38 -0.53 -12.12 16 4 C 0.43 15.92 7.20 71.24 0.51 16.43 16 5 O -0.50 -20.43 11.50 21.94 0.25 -20.18 16 6 C 0.08 2.84 5.55 85.56 0.47 3.31 16 7 N -0.46 -19.47 4.25 -709.70 -3.02 -22.48 16 8 C 0.18 9.20 2.80 85.56 0.24 9.44 16 9 C -0.52 -30.18 9.16 25.60 0.23 -29.94 16 10 H 0.05 3.31 7.60 -2.91 -0.02 3.29 16 11 C 0.03 1.59 5.47 84.65 0.46 2.06 16 12 N -0.93 -57.89 13.96 21.45 0.30 -57.59 16 13 Si 0.93 46.10 27.56 68.60 1.89 47.99 16 14 H -0.27 -13.25 7.11 99.48 0.71 -12.55 16 15 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 16 H -0.26 -12.54 6.41 99.48 0.64 -11.90 16 17 C 0.36 13.39 4.75 133.62 0.64 14.02 16 18 N -0.51 -19.09 7.01 -183.27 -1.29 -20.38 16 19 C 0.21 6.01 7.27 84.74 0.62 6.63 16 20 Cl -0.03 -0.65 29.10 -2.72 -0.08 -0.72 16 21 C -0.17 -3.16 9.55 22.35 0.21 -2.95 16 22 C 0.04 0.88 5.95 -19.42 -0.12 0.77 16 23 C -0.12 -1.28 9.68 71.24 0.69 -0.59 16 24 C -0.11 -3.13 5.66 -21.04 -0.12 -3.24 16 25 C 0.28 8.49 11.51 88.31 1.02 9.51 16 26 N -0.43 -13.93 18.55 19.02 0.35 -13.58 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 31 H 0.07 1.73 8.13 -2.39 -0.02 1.71 16 32 H 0.13 4.05 6.19 -2.39 -0.01 4.03 16 33 H 0.13 5.22 7.08 -2.38 -0.02 5.20 16 34 H 0.03 1.69 6.33 -2.39 -0.02 1.67 16 35 H 0.02 0.90 5.40 -2.39 -0.01 0.89 16 36 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 37 H 0.20 1.92 8.06 -2.91 -0.02 1.89 16 38 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.91 7.19 -2.38 -0.02 0.90 16 40 H 0.12 0.57 8.10 -2.39 -0.02 0.55 16 Total: -1.00 -74.48 356.88 4.96 -69.52 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 1.02 Total: 4.06 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: 6.05 Total: 25.49 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -3.65 Total: -114.03 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.27 Total: -32.30 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.89 Total: 47.99 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.72 kcal Total: -74.48 4.96 -69.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157151160.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.890 kcal (2) G-P(sol) polarization free energy of solvation -74.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds