Wall clock time and date at job start Tue Mar 31 2020 20:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45197 * 109.47342 * 2 1 4 4 C 1.34231 * 117.00000 * 180.02562 * 3 2 1 5 5 O 1.20817 * 120.00019 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99853 * 179.97438 * 4 3 2 7 7 N 1.46898 * 109.47029 * 186.35154 * 6 4 3 8 8 C 1.46896 * 111.00072 * 200.02312 * 7 6 4 9 9 C 1.50697 * 109.47429 * 169.99713 * 8 7 6 10 10 H 1.08001 * 120.00045 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00382 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99711 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00354 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47055 * 89.99871 * 13 11 9 15 15 H 1.48494 * 109.47342 * 210.00318 * 13 11 9 16 16 H 1.48504 * 109.46834 * 330.00254 * 13 11 9 17 17 C 1.38792 * 111.00229 * 76.06857 * 7 6 4 18 18 N 1.32310 * 119.99429 * 57.58143 * 17 7 6 19 19 C 1.32492 * 122.09570 * 180.02562 * 18 17 7 20 20 Cl 1.73601 * 119.22485 * 180.26706 * 19 18 17 21 21 C 1.37685 * 121.55289 * 359.97438 * 19 18 17 22 22 C 1.39580 * 119.03016 * 0.02562 * 21 19 18 23 23 N 1.37050 * 134.52102 * 180.02562 * 22 21 19 24 24 H 0.96994 * 125.05764 * 359.92063 * 23 22 21 25 25 C 1.37081 * 109.88241 * 179.97438 * 23 22 21 26 26 C 1.34287 * 109.85901 * 0.02562 * 25 23 22 27 27 C 1.40084 * 120.00189 * 237.57627 * 17 7 6 28 28 H 1.08995 * 109.46799 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46582 * 300.00061 * 1 2 3 30 30 H 1.08996 * 109.47040 * 59.99752 * 1 2 3 31 31 H 1.09003 * 109.46729 * 240.00288 * 2 1 3 32 32 H 1.08996 * 109.47040 * 120.00247 * 2 1 3 33 33 H 1.09001 * 109.46942 * 66.34955 * 6 4 3 34 34 H 1.09004 * 109.47041 * 306.34970 * 6 4 3 35 35 H 1.09000 * 109.47413 * 290.00281 * 8 7 6 36 36 H 1.09008 * 109.46896 * 50.00051 * 8 7 6 37 37 H 0.97003 * 119.99838 * 179.97438 * 12 11 9 38 38 H 1.07998 * 120.48473 * 179.97438 * 21 19 18 39 39 H 1.07999 * 125.07289 * 180.02562 * 25 23 22 40 40 H 1.08000 * 126.52902 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9209 2.9373 -0.0012 7 7 5.3799 2.8636 -0.1549 8 6 6.0209 4.1032 0.3038 9 6 7.5135 3.9047 0.3635 10 1 7.9432 2.9529 0.0878 11 6 8.3308 4.9380 0.7700 12 7 7.8077 6.0968 1.1062 13 14 10.1811 4.6921 0.8433 14 1 10.7817 5.0615 -0.4637 15 1 10.7527 5.5510 1.9113 16 1 10.4798 3.2681 1.1405 17 6 5.7281 2.5802 -1.4682 18 7 5.3266 3.3766 -2.4455 19 6 5.6342 3.1454 -3.7133 20 17 5.0736 4.2436 -4.9354 21 6 6.3931 2.0579 -4.0838 22 6 6.8464 1.1806 -3.0974 23 7 7.5987 0.0350 -3.1022 24 1 7.9705 -0.3840 -3.8941 25 6 7.7464 -0.4311 -1.8216 26 6 7.1072 0.3808 -0.9640 27 6 6.5045 1.4510 -1.7589 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.6791 3.4309 0.9402 34 1 3.4966 3.5057 -0.8289 35 1 5.7892 4.9106 -0.3908 36 1 5.6485 4.3592 1.2958 37 1 8.3826 6.8237 1.3926 38 1 6.6333 1.8858 -5.1226 39 1 8.2951 -1.3189 -1.5438 40 1 7.0495 0.2660 0.1083 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:33 Heat of formation + Delta-G solvation = -1.915331 kcal Electronic energy + Delta-G solvation = -27352.355897 eV Core-core repulsion = 23387.550605 eV Total energy + Delta-G solvation = -3964.805292 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.22005 -40.07184 -38.35359 -36.81218 -36.10136 -35.29180 -32.61247 -31.78183 -31.12989 -30.26822 -28.59969 -28.17590 -25.72049 -23.50206 -22.98529 -22.24919 -21.39423 -20.61430 -19.98398 -18.16678 -17.41235 -16.90947 -16.44635 -16.05830 -15.63867 -15.30628 -15.05040 -14.77226 -14.69252 -14.38247 -13.98051 -13.53734 -13.16235 -13.08407 -12.92612 -12.74636 -12.69652 -12.26580 -12.06565 -11.70668 -11.54519 -11.45094 -11.20064 -10.97746 -10.90910 -10.75756 -10.68506 -10.37327 -10.10324 -9.96117 -9.44098 -9.34708 -9.19497 -8.48585 -8.36552 -7.77917 -7.37950 -6.04277 -4.04711 1.21172 1.87293 2.14975 2.65245 2.85415 3.05010 3.32693 3.34554 3.38490 3.42951 4.20751 4.31168 4.50300 4.90577 4.92454 5.07809 5.11571 5.19033 5.25465 5.25847 5.33602 5.43395 5.58124 5.63418 5.68473 5.72850 5.84658 5.86608 5.90554 6.14318 6.36322 6.59873 6.70467 6.92504 7.03086 7.20107 7.32139 7.62752 7.68293 7.98128 8.04155 8.19722 8.28975 8.43030 9.01444 9.58580 11.06750 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.008255 B = 0.005052 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3390.942070 B = 5540.885239 C = 6395.660031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.366 6.366 4 C 0.455 3.545 5 O -0.480 6.480 6 C 0.062 3.938 7 N -0.471 5.471 8 C 0.199 3.801 9 C -0.508 4.508 10 H 0.067 0.933 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.896 3.104 14 H -0.282 1.282 15 H -0.286 1.286 16 H -0.272 1.272 17 C 0.420 3.580 18 N -0.534 5.534 19 C 0.199 3.801 20 Cl -0.050 7.050 21 C -0.187 4.187 22 C 0.132 3.868 23 N -0.589 5.589 24 H 0.413 0.587 25 C 0.013 3.987 26 C -0.121 4.121 27 C -0.114 4.114 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.017 0.983 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.133 0.867 39 H 0.170 0.830 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.195 -12.924 -7.507 17.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.284 6.284 4 C 0.296 3.704 5 O -0.365 6.365 6 C -0.066 4.066 7 N -0.195 5.195 8 C 0.077 3.923 9 C -0.547 4.547 10 H 0.085 0.915 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.724 3.276 14 H -0.209 1.209 15 H -0.212 1.212 16 H -0.196 1.196 17 C 0.185 3.815 18 N -0.250 5.250 19 C 0.039 3.961 20 Cl -0.022 7.022 21 C -0.212 4.212 22 C 0.016 3.984 23 N -0.194 5.194 24 H 0.250 0.750 25 C -0.110 4.110 26 C -0.146 4.146 27 C -0.123 4.123 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.106 0.894 35 H 0.035 0.965 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.151 0.849 39 H 0.188 0.812 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.254 -12.684 -7.134 16.730 hybrid contribution 1.456 -0.235 -1.083 1.829 sum -6.798 -12.918 -8.217 16.752 Atomic orbital electron populations 1.21789 0.93035 1.02565 1.03435 1.22894 0.94961 0.80954 1.02269 1.86503 1.25325 1.31723 1.84822 1.23985 0.80066 0.93364 0.72984 1.90647 1.59933 1.42542 1.43333 1.21648 0.89601 0.89868 1.05496 1.60055 1.04838 1.41192 1.13464 1.20000 0.94521 0.81922 0.95877 1.21092 0.90234 0.98709 1.44664 0.91479 1.24895 0.98871 0.94973 0.95349 1.69944 1.35383 1.02838 1.45236 0.86519 0.85268 0.78241 0.77601 1.20853 1.21173 1.19626 1.18953 0.88326 0.86451 0.87725 1.67026 1.27418 1.31146 0.99447 1.20563 0.96583 0.90487 0.88472 1.98356 1.88669 1.63882 1.51279 1.20199 1.05793 0.96405 0.98835 1.17924 0.96165 0.89386 0.94910 1.41506 1.46872 1.22193 1.08778 0.75027 1.21866 1.05204 1.01504 0.82457 1.21674 0.99794 0.93604 0.99554 1.19542 1.02978 0.97722 0.92049 0.90612 0.91509 0.91622 0.91739 0.91416 0.86198 0.89399 0.96516 0.93937 0.92833 0.84908 0.81245 0.82777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.29 37.16 0.38 -0.94 16 2 C 0.06 0.76 6.19 37.16 0.23 0.99 16 3 O -0.37 -5.57 10.22 -39.26 -0.40 -5.97 16 4 C 0.46 8.06 7.74 36.01 0.28 8.34 16 5 O -0.48 -9.40 15.22 -18.74 -0.29 -9.68 16 6 C 0.06 1.16 5.56 -4.98 -0.03 1.13 16 7 N -0.47 -10.38 4.04 -175.71 -0.71 -11.09 16 8 C 0.20 5.08 4.66 -4.98 -0.02 5.06 16 9 C -0.51 -14.15 8.72 -34.44 -0.30 -14.45 16 10 H 0.07 1.88 7.23 -52.49 -0.38 1.50 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 13 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 C 0.42 9.18 3.90 -154.94 -0.60 8.58 16 18 N -0.53 -11.48 9.17 -9.42 -0.09 -11.57 16 19 C 0.20 3.75 7.25 -17.47 -0.13 3.62 16 20 Cl -0.05 -0.81 29.08 -51.86 -1.51 -2.32 16 21 C -0.19 -3.11 9.87 -39.28 -0.39 -3.50 16 22 C 0.13 2.28 7.34 -84.08 -0.62 1.66 16 23 N -0.59 -7.83 6.05 -10.59 -0.06 -7.90 16 24 H 0.41 3.80 8.96 -40.82 -0.37 3.44 16 25 C 0.01 0.17 11.83 -16.60 -0.20 -0.02 16 26 C -0.12 -2.17 10.89 -37.74 -0.41 -2.58 16 27 C -0.11 -2.30 5.50 -105.01 -0.58 -2.88 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 32 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 33 H 0.12 1.99 7.73 -51.93 -0.40 1.59 16 34 H 0.09 1.61 7.37 -51.93 -0.38 1.23 16 35 H 0.02 0.47 7.83 -51.93 -0.41 0.06 16 36 H 0.04 1.11 7.83 -51.92 -0.41 0.70 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.15 2.84 8.06 -52.49 -0.42 2.42 16 LS Contribution 363.27 15.07 5.47 5.47 Total: -1.00 -33.43 363.27 -9.20 -42.63 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -4.86 Total: 2.48 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -2.48 Total: 6.63 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.12 Total: -56.07 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.69 Total: -15.66 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.51 Total: -2.32 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.43 -9.20 -42.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.717 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds