Wall clock time and date at job start Tue Mar 31 2020 20:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45197 * 109.47342 * 2 1 4 4 C 1.34231 * 117.00000 * 180.02562 * 3 2 1 5 5 O 1.20817 * 120.00019 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99853 * 179.97438 * 4 3 2 7 7 N 1.46898 * 109.47029 * 186.35154 * 6 4 3 8 8 C 1.46896 * 111.00072 * 200.02312 * 7 6 4 9 9 C 1.50697 * 109.47429 * 169.99713 * 8 7 6 10 10 H 1.08001 * 120.00045 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00382 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99711 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00354 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47055 * 89.99871 * 13 11 9 15 15 H 1.48494 * 109.47342 * 210.00318 * 13 11 9 16 16 H 1.48504 * 109.46834 * 330.00254 * 13 11 9 17 17 C 1.38792 * 111.00229 * 76.06857 * 7 6 4 18 18 N 1.32310 * 119.99429 * 57.58143 * 17 7 6 19 19 C 1.32492 * 122.09570 * 180.02562 * 18 17 7 20 20 Cl 1.73601 * 119.22485 * 180.26706 * 19 18 17 21 21 C 1.37685 * 121.55289 * 359.97438 * 19 18 17 22 22 C 1.39580 * 119.03016 * 0.02562 * 21 19 18 23 23 N 1.37050 * 134.52102 * 180.02562 * 22 21 19 24 24 H 0.96994 * 125.05764 * 359.92063 * 23 22 21 25 25 C 1.37081 * 109.88241 * 179.97438 * 23 22 21 26 26 C 1.34287 * 109.85901 * 0.02562 * 25 23 22 27 27 C 1.40084 * 120.00189 * 237.57627 * 17 7 6 28 28 H 1.08995 * 109.46799 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46582 * 300.00061 * 1 2 3 30 30 H 1.08996 * 109.47040 * 59.99752 * 1 2 3 31 31 H 1.09003 * 109.46729 * 240.00288 * 2 1 3 32 32 H 1.08996 * 109.47040 * 120.00247 * 2 1 3 33 33 H 1.09001 * 109.46942 * 66.34955 * 6 4 3 34 34 H 1.09004 * 109.47041 * 306.34970 * 6 4 3 35 35 H 1.09000 * 109.47413 * 290.00281 * 8 7 6 36 36 H 1.09008 * 109.46896 * 50.00051 * 8 7 6 37 37 H 0.97003 * 119.99838 * 179.97438 * 12 11 9 38 38 H 1.07998 * 120.48473 * 179.97438 * 21 19 18 39 39 H 1.07999 * 125.07289 * 180.02562 * 25 23 22 40 40 H 1.08000 * 126.52902 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9209 2.9373 -0.0012 7 7 5.3799 2.8636 -0.1549 8 6 6.0209 4.1032 0.3038 9 6 7.5135 3.9047 0.3635 10 1 7.9432 2.9529 0.0878 11 6 8.3308 4.9380 0.7700 12 7 7.8077 6.0968 1.1062 13 14 10.1811 4.6921 0.8433 14 1 10.7817 5.0615 -0.4637 15 1 10.7527 5.5510 1.9113 16 1 10.4798 3.2681 1.1405 17 6 5.7281 2.5802 -1.4682 18 7 5.3266 3.3766 -2.4455 19 6 5.6342 3.1454 -3.7133 20 17 5.0736 4.2436 -4.9354 21 6 6.3931 2.0579 -4.0838 22 6 6.8464 1.1806 -3.0974 23 7 7.5987 0.0350 -3.1022 24 1 7.9705 -0.3840 -3.8941 25 6 7.7464 -0.4311 -1.8216 26 6 7.1072 0.3808 -0.9640 27 6 6.5045 1.4510 -1.7589 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.6791 3.4309 0.9402 34 1 3.4966 3.5057 -0.8289 35 1 5.7892 4.9106 -0.3908 36 1 5.6485 4.3592 1.2958 37 1 8.3826 6.8237 1.3926 38 1 6.6333 1.8858 -5.1226 39 1 8.2951 -1.3189 -1.5438 40 1 7.0495 0.2660 0.1083 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157159602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:32 Heat of formation + Delta-G solvation = -23.321337 kcal Electronic energy + Delta-G solvation = -27353.284131 eV Core-core repulsion = 23387.550605 eV Total energy + Delta-G solvation = -3965.733526 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.54706 -41.42337 -39.76422 -38.20448 -37.43240 -36.78599 -34.69678 -32.80125 -32.40902 -31.61333 -30.21556 -29.71114 -27.41499 -25.09527 -24.18361 -23.61445 -22.91901 -21.94611 -21.29626 -19.50469 -18.94635 -18.47893 -17.86044 -17.58630 -17.08233 -16.74180 -16.64625 -16.18052 -16.13917 -15.96364 -15.27125 -14.98100 -14.49520 -14.41530 -14.26944 -14.11380 -13.89618 -13.58874 -13.50781 -13.34477 -12.79448 -12.77220 -12.66246 -12.60944 -12.47142 -12.27431 -12.22095 -12.04223 -11.61420 -11.48431 -11.25848 -10.85174 -10.63293 -10.59107 -9.71553 -9.51627 -8.67096 -8.19682 -6.27066 -0.16646 0.46534 0.80422 1.23908 1.38860 1.39979 1.50836 1.58072 1.81091 2.20404 2.40403 2.74640 2.88905 3.15500 3.74058 3.81259 3.94427 3.97859 4.01825 4.12332 4.18999 4.20235 4.35584 4.37771 4.43465 4.49894 4.79314 4.83817 4.93546 5.00402 5.10686 5.14592 5.22665 5.31863 5.46086 5.59665 5.67835 5.88644 5.93340 6.22969 6.42207 6.69799 6.82953 6.83720 6.94615 7.40175 8.91852 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.008255 B = 0.005052 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3390.942070 B = 5540.885239 C = 6395.660031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.464 3.536 5 O -0.500 6.500 6 C 0.059 3.941 7 N -0.473 5.473 8 C 0.218 3.782 9 C -0.516 4.516 10 H 0.061 0.939 11 C 0.010 3.990 12 N -0.929 5.929 13 Si 0.960 3.040 14 H -0.281 1.281 15 H -0.278 1.278 16 H -0.262 1.262 17 C 0.384 3.616 18 N -0.560 5.560 19 C 0.167 3.833 20 Cl -0.035 7.035 21 C -0.166 4.166 22 C 0.121 3.879 23 N -0.565 5.565 24 H 0.438 0.562 25 C 0.062 3.938 26 C -0.176 4.176 27 C -0.138 4.138 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.131 0.869 34 H 0.085 0.915 35 H -0.017 1.017 36 H 0.027 0.973 37 H 0.264 0.736 38 H 0.172 0.828 39 H 0.223 0.777 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.153 -15.610 -9.007 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.019 4.019 3 O -0.283 6.283 4 C 0.306 3.694 5 O -0.386 6.386 6 C -0.069 4.069 7 N -0.197 5.197 8 C 0.095 3.905 9 C -0.555 4.555 10 H 0.079 0.921 11 C -0.189 4.189 12 N -0.569 5.569 13 Si 0.785 3.215 14 H -0.207 1.207 15 H -0.203 1.203 16 H -0.186 1.186 17 C 0.150 3.850 18 N -0.277 5.277 19 C 0.007 3.993 20 Cl -0.007 7.007 21 C -0.190 4.190 22 C 0.004 3.996 23 N -0.172 5.172 24 H 0.279 0.721 25 C -0.063 4.063 26 C -0.201 4.201 27 C -0.147 4.147 28 H 0.121 0.879 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.148 0.852 34 H 0.103 0.897 35 H 0.000 1.000 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.190 0.810 39 H 0.240 0.760 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.234 -15.400 -8.677 19.099 hybrid contribution 1.061 0.480 -0.704 1.361 sum -6.172 -14.920 -9.382 18.674 Atomic orbital electron populations 1.21816 0.90135 1.04430 1.03660 1.23265 0.97162 0.79143 1.02289 1.86489 1.23603 1.33973 1.84231 1.23604 0.80817 0.92458 0.72569 1.90629 1.60641 1.42922 1.44441 1.21663 0.88249 0.91103 1.05882 1.59878 1.06315 1.38715 1.14825 1.19532 0.94109 0.82809 0.94087 1.21313 0.91447 0.98459 1.44254 0.92052 1.25737 1.03503 0.94642 0.94985 1.70063 1.37023 1.03632 1.46192 0.85517 0.79668 0.78683 0.77647 1.20684 1.20338 1.18564 1.19024 0.90603 0.88032 0.87348 1.66885 1.28166 1.31968 1.00708 1.20910 0.98179 0.92071 0.88111 1.98345 1.88654 1.63586 1.50126 1.20547 1.03301 0.94663 1.00515 1.18044 0.96926 0.90781 0.93865 1.41527 1.45207 1.20591 1.09832 0.72073 1.22539 1.01541 1.00797 0.81435 1.21683 1.03422 0.95385 0.99642 1.19896 1.02816 0.97843 0.94180 0.87861 0.91109 0.91561 0.92018 0.91170 0.85157 0.89747 0.99962 0.95528 0.92690 0.81047 0.76034 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 10.29 71.98 0.74 -1.52 16 2 C 0.05 1.29 6.19 71.98 0.45 1.73 16 3 O -0.37 -11.26 10.22 -51.42 -0.53 -11.79 16 4 C 0.46 17.01 7.74 71.24 0.55 17.56 16 5 O -0.50 -20.14 15.22 21.99 0.33 -19.81 16 6 C 0.06 2.33 5.56 85.56 0.48 2.81 16 7 N -0.47 -22.06 4.04 -709.84 -2.87 -24.93 16 8 C 0.22 11.86 4.66 85.56 0.40 12.26 16 9 C -0.52 -29.77 8.72 25.60 0.22 -29.55 16 10 H 0.06 3.55 7.23 -2.91 -0.02 3.53 16 11 C 0.01 0.57 5.46 84.65 0.46 1.03 16 12 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 13 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 17 C 0.38 17.42 3.90 133.39 0.52 17.94 16 18 N -0.56 -24.99 9.17 -183.70 -1.68 -26.67 16 19 C 0.17 6.27 7.25 84.46 0.61 6.89 16 20 Cl -0.04 -1.14 29.08 -2.72 -0.08 -1.21 16 21 C -0.17 -5.20 9.87 22.46 0.22 -4.98 16 22 C 0.12 3.93 7.34 39.27 0.29 4.22 16 23 N -0.57 -12.80 6.05 -187.42 -1.13 -13.93 16 24 H 0.44 5.77 8.96 -92.71 -0.83 4.94 16 25 C 0.06 1.46 11.83 82.97 0.98 2.45 16 26 C -0.18 -6.21 10.89 23.47 0.26 -5.95 16 27 C -0.14 -5.60 5.50 -20.11 -0.11 -5.71 16 28 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 32 H 0.07 1.61 8.13 -2.39 -0.02 1.60 16 33 H 0.13 4.66 7.73 -2.39 -0.02 4.64 16 34 H 0.08 3.34 7.37 -2.38 -0.02 3.32 16 35 H -0.02 -1.05 7.83 -2.39 -0.02 -1.07 16 36 H 0.03 1.49 7.83 -2.38 -0.02 1.47 16 37 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 38 H 0.17 3.87 8.06 -2.91 -0.02 3.84 16 39 H 0.22 2.89 8.06 -2.91 -0.02 2.86 16 40 H 0.14 5.19 8.06 -2.91 -0.02 5.17 16 Total: -1.00 -76.62 363.27 2.67 -73.95 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.26 Total: 13.85 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 6.07 Total: 19.17 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -5.40 Total: -121.38 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.19 Total: -31.59 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.21 kcal Total: -76.62 2.67 -73.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.625 kcal (2) G-P(sol) polarization free energy of solvation -76.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds