Wall clock time and date at job start Tue Mar 31 2020 20:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45204 * 109.46981 * 2 1 4 4 C 1.34231 * 117.00034 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99683 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99959 * 179.97438 * 4 3 2 7 7 N 1.46896 * 109.47129 * 174.24299 * 6 4 3 8 8 C 1.46897 * 111.00380 * 287.64384 * 7 6 4 9 9 C 1.50699 * 109.47633 * 160.39536 * 8 7 6 10 10 H 1.08004 * 119.99673 * 4.99404 * 9 8 7 11 11 C 1.37871 * 120.00250 * 184.98837 * 9 8 7 12 12 N 1.31514 * 120.00282 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99978 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47437 * 90.00086 * 13 11 9 15 15 H 1.48505 * 109.46711 * 209.99720 * 13 11 9 16 16 H 1.48504 * 109.47132 * 329.99409 * 13 11 9 17 17 C 1.37201 * 111.00458 * 163.68608 * 7 6 4 18 18 N 1.34966 * 119.36467 * 63.95497 * 17 7 6 19 19 H 0.96996 * 119.72319 * 359.97438 * 18 17 7 20 20 C 1.37823 * 120.54669 * 180.02562 * 18 17 7 21 21 N 1.32358 * 133.27574 * 180.27107 * 20 18 17 22 22 C 1.33362 * 110.61003 * 180.12999 * 21 20 18 23 23 C 1.35992 * 109.72320 * 359.61293 * 22 21 20 24 24 C 1.41326 * 106.30693 * 0.22929 * 23 22 21 25 25 C 1.39995 * 134.37547 * 180.02562 * 24 23 22 26 26 C 1.38075 * 119.01619 * 180.02562 * 25 24 23 27 27 Cl 1.73601 * 119.90962 * 179.97438 * 26 25 24 28 28 H 1.08994 * 109.47471 * 300.00153 * 1 2 3 29 29 H 1.09001 * 109.46485 * 60.00917 * 1 2 3 30 30 H 1.09000 * 109.46809 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47909 * 239.99539 * 2 1 3 32 32 H 1.09009 * 109.46758 * 119.99086 * 2 1 3 33 33 H 1.08996 * 109.46951 * 54.24443 * 6 4 3 34 34 H 1.08999 * 109.47467 * 294.24351 * 6 4 3 35 35 H 1.09002 * 109.46933 * 280.39716 * 8 7 6 36 36 H 1.08999 * 109.47276 * 40.39487 * 8 7 6 37 37 H 0.97001 * 120.00601 * 180.02562 * 12 11 9 38 38 H 1.08008 * 125.13853 * 179.87286 * 22 21 20 39 39 H 1.08001 * 126.84366 * 180.22776 * 23 22 21 40 40 H 1.08000 * 120.49637 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3811 2.8634 0.1397 8 6 5.7604 2.4729 1.5040 9 6 7.1718 1.9447 1.5014 10 1 7.7591 1.9778 0.5956 11 6 7.7133 1.4193 2.6553 12 7 8.9452 0.9587 2.6532 13 14 6.6974 1.3615 4.2219 14 1 5.9533 0.0778 4.2823 15 1 7.5964 1.4684 5.3990 16 1 5.7349 2.4924 4.2297 17 6 5.9698 4.0514 -0.2133 18 7 5.7103 5.1598 0.5118 19 1 5.1117 5.1071 1.2732 20 6 6.2879 6.3659 0.1786 21 7 6.2183 7.5802 0.7005 22 6 6.9718 8.4337 0.0060 23 6 7.5819 7.7789 -1.0180 24 6 7.1596 6.4327 -0.9357 25 6 7.4226 5.2769 -1.6805 26 6 6.8214 4.0903 -1.3103 27 17 7.1306 2.6432 -2.2179 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8935 -0.5138 -0.8898 32 1 1.8933 -0.5137 0.8902 33 1 3.5042 3.5032 0.8334 34 1 3.6701 3.4340 -0.9374 35 1 5.6984 3.3407 2.1608 36 1 5.0830 1.6975 1.8617 37 1 9.3262 0.5887 3.4649 38 1 7.0842 9.4851 0.2262 39 1 8.2549 8.2032 -1.7484 40 1 8.0853 5.3129 -2.5326 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157161634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:36 Heat of formation + Delta-G solvation = 26.651934 kcal Electronic energy + Delta-G solvation = -27068.657257 eV Core-core repulsion = 23105.090735 eV Total energy + Delta-G solvation = -3963.566522 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.69383 -40.44623 -39.18769 -36.72918 -36.21788 -35.42239 -33.32628 -32.77297 -31.92306 -29.37988 -29.03916 -28.36537 -26.24097 -24.13616 -23.27849 -22.27638 -21.60833 -20.86051 -20.26363 -17.88591 -17.63748 -17.45267 -16.86517 -16.69461 -16.36740 -16.11428 -15.44807 -15.30015 -14.66915 -14.27912 -14.16904 -13.92944 -13.74601 -13.31374 -12.98156 -12.82485 -12.64958 -12.38000 -12.20764 -12.14576 -11.84380 -11.76651 -11.71240 -11.59176 -10.90462 -10.88533 -10.56125 -10.48837 -10.43889 -10.20401 -9.91862 -9.61323 -9.18585 -8.81130 -8.66869 -7.72144 -7.43563 -6.23437 -4.23541 0.28233 1.52465 2.12184 2.31991 2.42032 2.85804 3.12500 3.15920 3.21543 3.60802 3.63390 3.77722 4.22208 4.47743 4.60933 4.75141 4.81613 4.84879 4.92189 4.97261 5.04995 5.14100 5.19139 5.23111 5.50893 5.60249 5.71658 5.75807 5.79091 5.94252 5.98113 6.14747 6.26616 6.42347 6.56355 6.58462 6.71905 7.08632 7.21732 7.36699 7.46395 7.89894 8.31252 8.39325 8.88603 9.33104 10.88666 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.008437 B = 0.005064 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3317.756797 B = 5527.843496 C = 6866.437271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.366 6.366 4 C 0.457 3.543 5 O -0.454 6.454 6 C 0.056 3.944 7 N -0.465 5.465 8 C 0.161 3.839 9 C -0.514 4.514 10 H 0.095 0.905 11 C 0.080 3.920 12 N -0.882 5.882 13 Si 0.866 3.134 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.271 1.271 17 C 0.403 3.597 18 N -0.509 5.509 19 H 0.418 0.582 20 C 0.250 3.750 21 N -0.549 5.549 22 C 0.052 3.948 23 C -0.245 4.245 24 C -0.165 4.165 25 C 0.048 3.952 26 C -0.102 4.102 27 Cl -0.016 7.016 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.120 0.880 35 H -0.004 1.004 36 H 0.047 0.953 37 H 0.267 0.733 38 H 0.155 0.845 39 H 0.131 0.869 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.968 4.219 -8.375 16.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.284 6.284 4 C 0.296 3.704 5 O -0.337 6.337 6 C -0.072 4.072 7 N -0.189 5.189 8 C 0.038 3.962 9 C -0.552 4.552 10 H 0.113 0.887 11 C -0.124 4.124 12 N -0.519 5.519 13 Si 0.693 3.307 14 H -0.198 1.198 15 H -0.206 1.206 16 H -0.196 1.196 17 C 0.184 3.816 18 N -0.107 5.107 19 H 0.256 0.744 20 C 0.005 3.995 21 N -0.270 5.270 22 C -0.094 4.094 23 C -0.268 4.268 24 C -0.173 4.173 25 C 0.023 3.977 26 C -0.135 4.135 27 Cl 0.012 6.988 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.138 0.862 35 H 0.014 0.986 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.173 0.827 39 H 0.149 0.851 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.967 3.641 -7.766 15.547 hybrid contribution -0.342 -0.173 1.190 1.250 sum -13.309 3.468 -6.576 15.245 Atomic orbital electron populations 1.21798 0.92769 1.02871 1.03375 1.23005 0.95056 0.80143 1.02908 1.86440 1.24502 1.32558 1.84926 1.23000 0.80647 0.92196 0.74536 1.90812 1.59702 1.41826 1.41325 1.21667 0.87712 0.92721 1.05051 1.59251 1.05466 1.21252 1.32948 1.20637 1.00685 0.95674 0.79191 1.20823 0.94592 1.40584 0.99201 0.88662 1.24792 0.94834 0.94573 0.98250 1.69847 1.13805 1.39695 1.28577 0.87022 0.80670 0.78928 0.84074 1.19780 1.20637 1.19639 1.18855 0.92733 0.80665 0.89336 1.42017 1.36570 1.06189 1.25929 0.74390 1.19126 0.97599 0.86821 0.95951 1.69641 1.27823 0.97812 1.31694 1.22231 0.95779 0.98018 0.93389 1.21267 1.09020 0.91588 1.04907 1.19027 1.04329 0.95222 0.98768 1.21234 0.91579 0.88993 0.95918 1.19608 1.05056 0.90608 0.98237 1.98387 1.94530 1.34723 1.71118 0.91569 0.91547 0.90303 0.91064 0.91118 0.90181 0.86158 0.98642 0.93551 0.92244 0.82733 0.85081 0.83491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.29 37.16 0.38 -0.76 16 2 C 0.06 0.68 6.19 37.16 0.23 0.91 16 3 O -0.37 -4.70 10.22 -39.26 -0.40 -5.10 16 4 C 0.46 6.97 7.37 36.00 0.27 7.24 16 5 O -0.45 -8.77 15.14 -18.75 -0.28 -9.06 16 6 C 0.06 0.75 5.24 -4.98 -0.03 0.73 16 7 N -0.47 -8.23 3.26 -175.84 -0.57 -8.80 16 8 C 0.16 3.43 3.27 -4.98 -0.02 3.41 16 9 C -0.51 -13.58 9.50 -34.44 -0.33 -13.90 16 10 H 0.10 2.74 8.06 -52.48 -0.42 2.31 16 11 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 12 N -0.88 -26.01 13.96 55.43 0.77 -25.23 16 13 Si 0.87 20.43 27.37 -169.99 -4.65 15.78 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.27 -6.01 6.69 56.52 0.38 -5.63 16 17 C 0.40 6.82 4.79 -154.58 -0.74 6.08 16 18 N -0.51 -8.29 4.84 -11.19 -0.05 -8.34 16 19 H 0.42 6.06 7.53 -40.82 -0.31 5.76 16 20 C 0.25 4.49 8.45 -155.23 -1.31 3.18 16 21 N -0.55 -10.24 11.20 -12.28 -0.14 -10.38 16 22 C 0.05 0.85 11.78 -17.69 -0.21 0.64 16 23 C -0.24 -3.85 11.00 -39.21 -0.43 -4.28 16 24 C -0.17 -2.79 6.24 -106.77 -0.67 -3.46 16 25 C 0.05 0.73 9.94 -38.98 -0.39 0.34 16 26 C -0.10 -1.69 6.33 -39.39 -0.25 -1.94 16 27 Cl -0.02 -0.27 28.37 -51.86 -1.47 -1.74 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 32 H 0.07 0.81 8.13 -51.92 -0.42 0.38 16 33 H 0.08 0.89 7.78 -51.93 -0.40 0.48 16 34 H 0.12 1.30 7.96 -51.93 -0.41 0.88 16 35 H 0.00 -0.08 6.24 -51.93 -0.32 -0.40 16 36 H 0.05 1.02 5.78 -51.93 -0.30 0.72 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.16 2.03 8.06 -52.48 -0.42 1.61 16 39 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 40 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -33.40 357.67 -9.71 -43.11 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.71 Total: 4.09 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -3.58 Total: 0.29 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.01 Total: -52.76 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.69 Total: -14.15 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.65 Total: 15.78 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.47 Total: -1.74 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.40 -9.71 -43.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.759 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds