Wall clock time and date at job start Tue Mar 31 2020 20:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45204 * 109.46981 * 2 1 4 4 C 1.34231 * 117.00034 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99683 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99959 * 179.97438 * 4 3 2 7 7 N 1.46896 * 109.47129 * 174.24299 * 6 4 3 8 8 C 1.46897 * 111.00380 * 287.64384 * 7 6 4 9 9 C 1.50699 * 109.47633 * 160.39536 * 8 7 6 10 10 H 1.08004 * 119.99673 * 4.99404 * 9 8 7 11 11 C 1.37871 * 120.00250 * 184.98837 * 9 8 7 12 12 N 1.31514 * 120.00282 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99978 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47437 * 90.00086 * 13 11 9 15 15 H 1.48505 * 109.46711 * 209.99720 * 13 11 9 16 16 H 1.48504 * 109.47132 * 329.99409 * 13 11 9 17 17 C 1.37201 * 111.00458 * 163.68608 * 7 6 4 18 18 N 1.34966 * 119.36467 * 63.95497 * 17 7 6 19 19 H 0.96996 * 119.72319 * 359.97438 * 18 17 7 20 20 C 1.37823 * 120.54669 * 180.02562 * 18 17 7 21 21 N 1.32358 * 133.27574 * 180.27107 * 20 18 17 22 22 C 1.33362 * 110.61003 * 180.12999 * 21 20 18 23 23 C 1.35992 * 109.72320 * 359.61293 * 22 21 20 24 24 C 1.41326 * 106.30693 * 0.22929 * 23 22 21 25 25 C 1.39995 * 134.37547 * 180.02562 * 24 23 22 26 26 C 1.38075 * 119.01619 * 180.02562 * 25 24 23 27 27 Cl 1.73601 * 119.90962 * 179.97438 * 26 25 24 28 28 H 1.08994 * 109.47471 * 300.00153 * 1 2 3 29 29 H 1.09001 * 109.46485 * 60.00917 * 1 2 3 30 30 H 1.09000 * 109.46809 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47909 * 239.99539 * 2 1 3 32 32 H 1.09009 * 109.46758 * 119.99086 * 2 1 3 33 33 H 1.08996 * 109.46951 * 54.24443 * 6 4 3 34 34 H 1.08999 * 109.47467 * 294.24351 * 6 4 3 35 35 H 1.09002 * 109.46933 * 280.39716 * 8 7 6 36 36 H 1.08999 * 109.47276 * 40.39487 * 8 7 6 37 37 H 0.97001 * 120.00601 * 180.02562 * 12 11 9 38 38 H 1.08008 * 125.13853 * 179.87286 * 22 21 20 39 39 H 1.08001 * 126.84366 * 180.22776 * 23 22 21 40 40 H 1.08000 * 120.49637 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3811 2.8634 0.1397 8 6 5.7604 2.4729 1.5040 9 6 7.1718 1.9447 1.5014 10 1 7.7591 1.9778 0.5956 11 6 7.7133 1.4193 2.6553 12 7 8.9452 0.9587 2.6532 13 14 6.6974 1.3615 4.2219 14 1 5.9533 0.0778 4.2823 15 1 7.5964 1.4684 5.3990 16 1 5.7349 2.4924 4.2297 17 6 5.9698 4.0514 -0.2133 18 7 5.7103 5.1598 0.5118 19 1 5.1117 5.1071 1.2732 20 6 6.2879 6.3659 0.1786 21 7 6.2183 7.5802 0.7005 22 6 6.9718 8.4337 0.0060 23 6 7.5819 7.7789 -1.0180 24 6 7.1596 6.4327 -0.9357 25 6 7.4226 5.2769 -1.6805 26 6 6.8214 4.0903 -1.3103 27 17 7.1306 2.6432 -2.2179 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8935 -0.5138 -0.8898 32 1 1.8933 -0.5137 0.8902 33 1 3.5042 3.5032 0.8334 34 1 3.6701 3.4340 -0.9374 35 1 5.6984 3.3407 2.1608 36 1 5.0830 1.6975 1.8617 37 1 9.3262 0.5887 3.4649 38 1 7.0842 9.4851 0.2262 39 1 8.2549 8.2032 -1.7484 40 1 8.0853 5.3129 -2.5326 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157161634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:35 Heat of formation + Delta-G solvation = 6.726045 kcal Electronic energy + Delta-G solvation = -27069.521309 eV Core-core repulsion = 23105.090735 eV Total energy + Delta-G solvation = -3964.430574 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.97314 -41.63416 -40.45311 -37.91420 -37.50368 -36.76566 -34.76769 -34.56509 -32.75564 -30.84564 -30.43901 -29.64467 -27.61185 -25.51020 -24.30866 -23.70828 -22.89307 -22.04376 -21.53663 -19.29303 -19.02641 -18.76363 -18.39581 -17.85859 -17.56455 -17.43863 -16.76708 -16.56603 -16.15734 -15.66947 -15.42480 -15.15691 -15.01609 -14.64389 -14.32648 -14.10864 -13.74231 -13.61538 -13.55581 -13.35420 -13.05175 -12.98410 -12.86669 -12.67746 -12.53024 -12.48938 -12.14182 -11.83548 -11.68507 -11.51978 -11.46785 -11.17265 -10.84047 -10.49045 -10.12292 -9.02558 -8.68955 -8.31516 -6.35175 -0.97042 0.23995 0.85047 1.15043 1.25114 1.27471 1.29563 1.35689 1.62772 2.26021 2.33039 2.38968 2.49290 3.01012 3.27256 3.54047 3.69305 3.77919 3.93429 3.99175 4.02188 4.07839 4.10163 4.31995 4.36525 4.41347 4.49797 4.74046 4.81995 4.88227 4.93594 4.93943 5.12262 5.18475 5.29791 5.34059 5.44314 5.46174 5.80262 5.94328 6.23749 6.28359 6.75103 6.77158 7.12624 7.25252 8.84189 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.008437 B = 0.005064 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3317.756797 B = 5527.843496 C = 6866.437271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.462 3.538 5 O -0.504 6.504 6 C 0.051 3.949 7 N -0.478 5.478 8 C 0.171 3.829 9 C -0.513 4.513 10 H 0.061 0.939 11 C 0.018 3.982 12 N -0.936 5.936 13 Si 0.926 3.074 14 H -0.270 1.270 15 H -0.284 1.284 16 H -0.244 1.244 17 C 0.400 3.600 18 N -0.502 5.502 19 H 0.425 0.575 20 C 0.229 3.771 21 N -0.575 5.575 22 C 0.035 3.965 23 C -0.240 4.240 24 C -0.183 4.183 25 C 0.061 3.939 26 C -0.114 4.114 27 Cl -0.023 7.023 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.114 0.886 34 H 0.152 0.848 35 H 0.010 0.990 36 H 0.046 0.954 37 H 0.266 0.734 38 H 0.181 0.819 39 H 0.159 0.841 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.108 5.698 -8.585 18.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.304 3.696 5 O -0.390 6.390 6 C -0.075 4.075 7 N -0.201 5.201 8 C 0.047 3.953 9 C -0.551 4.551 10 H 0.079 0.921 11 C -0.181 4.181 12 N -0.576 5.576 13 Si 0.749 3.251 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.167 1.167 17 C 0.181 3.819 18 N -0.101 5.101 19 H 0.264 0.736 20 C -0.016 4.016 21 N -0.297 5.297 22 C -0.110 4.110 23 C -0.263 4.263 24 C -0.192 4.192 25 C 0.036 3.964 26 C -0.148 4.148 27 Cl 0.005 6.995 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.131 0.869 34 H 0.169 0.831 35 H 0.028 0.972 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.198 0.802 39 H 0.176 0.824 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -15.168 5.161 -7.990 17.904 hybrid contribution 0.295 -0.603 1.114 1.300 sum -14.874 4.558 -6.877 17.008 Atomic orbital electron populations 1.21810 0.89901 1.04367 1.03899 1.23295 0.97246 0.79090 1.02406 1.86451 1.23072 1.33792 1.84182 1.23330 0.81038 0.92261 0.73012 1.90803 1.60883 1.43402 1.43914 1.21929 0.85062 0.92407 1.08053 1.58949 1.08254 1.22035 1.30892 1.20315 0.97555 0.95800 0.81603 1.21106 0.96770 1.39552 0.97714 0.92067 1.25645 0.95827 0.94652 1.01932 1.70008 1.15978 1.42130 1.29489 0.86052 0.79507 0.79849 0.79648 1.19573 1.20969 1.16697 1.18819 0.92902 0.80532 0.89633 1.41893 1.36502 1.05628 1.26051 0.73592 1.19372 0.98429 0.87048 0.96717 1.69612 1.28872 0.98447 1.32725 1.22749 0.95597 0.99157 0.93477 1.21636 1.08644 0.90997 1.04997 1.19332 1.04693 0.96202 0.98944 1.21488 0.90903 0.87854 0.96136 1.19788 1.05423 0.90855 0.98688 1.98385 1.94598 1.35259 1.71212 0.91196 0.90806 0.88339 0.91337 0.92037 0.86882 0.83053 0.97237 0.93610 0.92474 0.80155 0.82377 0.80539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 10.29 71.98 0.74 -1.07 16 2 C 0.05 1.08 6.19 71.98 0.45 1.53 16 3 O -0.36 -8.52 10.22 -51.43 -0.53 -9.05 16 4 C 0.46 13.46 7.37 71.23 0.52 13.99 16 5 O -0.50 -19.43 15.14 21.96 0.33 -19.10 16 6 C 0.05 1.27 5.24 85.56 0.45 1.72 16 7 N -0.48 -16.33 3.26 -710.23 -2.32 -18.65 16 8 C 0.17 7.11 3.27 85.56 0.28 7.39 16 9 C -0.51 -27.45 9.50 25.60 0.24 -27.21 16 10 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 11 C 0.02 1.02 5.47 84.65 0.46 1.48 16 12 N -0.94 -57.02 13.96 21.45 0.30 -56.72 16 13 Si 0.93 41.98 27.37 68.60 1.88 43.85 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 15 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 16 H -0.24 -9.82 6.69 99.48 0.67 -9.15 16 17 C 0.40 13.05 4.79 132.83 0.64 13.69 16 18 N -0.50 -15.54 4.84 -189.32 -0.92 -16.46 16 19 H 0.42 11.47 7.53 -92.71 -0.70 10.77 16 20 C 0.23 7.89 8.45 134.10 1.13 9.03 16 21 N -0.58 -20.61 11.20 -192.78 -2.16 -22.77 16 22 C 0.04 1.09 11.78 83.94 0.99 2.07 16 23 C -0.24 -6.98 11.00 22.51 0.25 -6.74 16 24 C -0.18 -5.86 6.24 -21.26 -0.13 -5.99 16 25 C 0.06 1.76 9.94 22.66 0.23 1.98 16 26 C -0.11 -3.67 6.33 22.40 0.14 -3.53 16 27 Cl -0.02 -0.77 28.37 -2.72 -0.08 -0.85 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.87 16 31 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 32 H 0.06 1.37 8.13 -2.38 -0.02 1.35 16 33 H 0.11 2.10 7.78 -2.39 -0.02 2.09 16 34 H 0.15 2.81 7.96 -2.39 -0.02 2.80 16 35 H 0.01 0.39 6.24 -2.39 -0.01 0.38 16 36 H 0.05 1.94 5.78 -2.39 -0.01 1.93 16 37 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.18 4.32 8.06 -2.91 -0.02 4.29 16 39 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 40 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -74.34 357.67 3.25 -71.09 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.35 Total: 20.30 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 6.39 Total: 8.35 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -5.09 Total: -114.60 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.19 Total: -28.14 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.88 Total: 43.85 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.85 kcal Total: -74.34 3.25 -71.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.816 kcal (2) G-P(sol) polarization free energy of solvation -74.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds