Wall clock time and date at job start Tue Mar 31 2020 20:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.46897 * 2 1 4 4 C 1.34226 * 116.99956 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00057 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00064 * 179.97438 * 4 3 2 7 7 N 1.46903 * 109.47213 * 175.77817 * 6 4 3 8 8 C 1.46905 * 110.99408 * 297.58961 * 7 6 4 9 9 C 1.50700 * 109.47568 * 296.20837 * 8 7 6 10 10 H 1.07998 * 119.99430 * 4.54476 * 9 8 7 11 11 C 1.37868 * 120.00472 * 184.54884 * 9 8 7 12 12 N 1.31521 * 119.99708 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00225 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47185 * 89.99874 * 13 11 9 15 15 H 1.48499 * 109.47046 * 209.99825 * 13 11 9 16 16 H 1.48494 * 109.47096 * 329.99671 * 13 11 9 17 17 C 1.38644 * 110.99950 * 61.54167 * 7 6 4 18 18 N 1.32544 * 119.54487 * 252.47194 * 17 7 6 19 19 C 1.31666 * 121.79401 * 179.97438 * 18 17 7 20 20 C 1.50696 * 119.67026 * 180.02562 * 19 18 17 21 21 C 1.39586 * 120.65827 * 0.02562 * 19 18 17 22 22 C 1.43196 * 120.48104 * 179.97438 * 21 19 18 23 23 N 8.22750 * 141.98117 * 264.41430 * 2 1 3 24 24 C 1.40344 * 119.03870 * 359.97438 * 21 19 18 25 25 C 1.37997 * 118.36354 * 359.74691 * 24 21 19 26 26 Cl 1.73601 * 120.38489 * 180.24239 * 25 24 21 27 27 H 1.08999 * 109.47296 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47809 * 300.00184 * 1 2 3 29 29 H 1.09002 * 109.47167 * 59.99957 * 1 2 3 30 30 H 1.09000 * 109.47376 * 240.00132 * 2 1 3 31 31 H 1.08997 * 109.46606 * 119.99606 * 2 1 3 32 32 H 1.09001 * 109.47143 * 55.77893 * 6 4 3 33 33 H 1.08994 * 109.47163 * 295.77757 * 6 4 3 34 34 H 1.08995 * 109.47319 * 56.21430 * 8 7 6 35 35 H 1.09006 * 109.46463 * 176.21235 * 8 7 6 36 36 H 0.97001 * 119.99813 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.47093 * 89.99490 * 20 19 18 38 38 H 1.09001 * 109.47173 * 209.99804 * 20 19 18 39 39 H 1.09002 * 109.47384 * 329.99775 * 20 19 18 40 40 H 1.08001 * 120.81833 * 179.97438 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 7 5.3841 2.8621 0.1027 8 6 5.7914 2.2360 1.3677 9 6 5.3475 3.0984 2.5210 10 1 4.7528 3.9810 2.3376 11 6 5.7007 2.7608 3.8102 12 7 6.4255 1.6862 4.0335 13 14 5.1498 3.8294 5.2398 14 1 3.8360 3.3499 5.7388 15 1 6.1529 3.7506 6.3320 16 1 5.0228 5.2374 4.7852 17 6 5.9243 2.1882 -0.9819 18 7 6.4103 0.9663 -0.8161 19 6 6.9328 0.2861 -1.8151 20 6 7.4710 -1.1004 -1.5727 21 6 6.9930 0.8365 -3.0964 22 6 7.5626 0.0936 -4.1800 23 7 8.0117 -0.4932 -5.0434 24 6 6.4874 2.1286 -3.3073 25 6 5.9434 2.8031 -2.2333 26 17 5.2971 4.4014 -2.4363 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3635 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 3.5250 3.4946 0.8492 33 1 3.6470 3.4435 -0.9258 34 1 5.3301 1.2520 1.4511 35 1 6.8763 2.1316 1.3885 36 1 6.6742 1.4489 4.9405 37 1 6.6769 -1.8307 -1.7277 38 1 8.2881 -1.2993 -2.2661 39 1 7.8375 -1.1740 -0.5487 40 1 6.5197 2.5823 -4.2869 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157161697.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:40 Heat of formation + Delta-G solvation = -2.568011 kcal Electronic energy + Delta-G solvation = -27317.889936 eV Core-core repulsion = 23353.056342 eV Total energy + Delta-G solvation = -3964.833594 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.97339 -39.87695 -37.57978 -36.58073 -36.33072 -35.48404 -32.91676 -32.68317 -31.83877 -31.35846 -28.29771 -27.74398 -26.60097 -23.77211 -23.31712 -22.14256 -21.52925 -20.39055 -19.02657 -17.64278 -17.06490 -16.97952 -16.33452 -15.82178 -15.56242 -15.24291 -14.80575 -14.57424 -14.22683 -13.99714 -13.67598 -13.44052 -13.21073 -13.06964 -13.01477 -12.80674 -12.70433 -12.38646 -12.21244 -12.17247 -12.03693 -11.64157 -11.45725 -11.30055 -11.22912 -10.89187 -10.82507 -10.71785 -10.35061 -10.26894 -10.10980 -9.77880 -9.43010 -9.31171 -8.86730 -8.48497 -7.72482 -6.09410 -4.13728 0.56774 1.10627 2.07789 2.64831 2.65087 2.84765 3.07250 3.27108 3.34202 3.36738 3.70501 3.83236 3.98492 4.36588 4.49201 4.56579 4.92733 4.99877 5.04108 5.14953 5.22548 5.27575 5.35825 5.40556 5.46778 5.59520 5.66207 5.75020 5.82537 5.84729 5.88076 5.96911 5.99366 6.29935 6.75313 6.81270 7.23202 7.40520 7.58856 7.68954 7.96065 8.09676 8.19571 8.30198 8.91400 9.49684 11.00503 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009074 B = 0.004724 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.101562 B = 5926.039086 C = 6746.982323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.363 6.363 4 C 0.425 3.575 5 O -0.476 6.476 6 C 0.074 3.926 7 N -0.450 5.450 8 C 0.185 3.815 9 C -0.528 4.528 10 H 0.064 0.936 11 C 0.064 3.936 12 N -0.886 5.886 13 Si 0.896 3.104 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.271 1.271 17 C 0.369 3.631 18 N -0.450 5.450 19 C 0.211 3.789 20 C -0.111 4.111 21 C -0.120 4.120 22 C 0.274 3.726 23 N -0.427 5.427 24 C -0.006 4.006 25 C -0.115 4.115 26 Cl -0.041 7.041 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.140 0.860 33 H 0.110 0.890 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.838 -0.470 -12.036 13.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.281 6.281 4 C 0.265 3.735 5 O -0.361 6.361 6 C -0.054 4.054 7 N -0.166 5.166 8 C 0.062 3.938 9 C -0.566 4.566 10 H 0.082 0.918 11 C -0.139 4.139 12 N -0.524 5.524 13 Si 0.724 3.276 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.196 1.196 17 C 0.136 3.864 18 N -0.162 5.162 19 C 0.066 3.934 20 C -0.168 4.168 21 C -0.128 4.128 22 C -0.041 4.041 23 N -0.103 5.103 24 C -0.034 4.034 25 C -0.147 4.147 26 Cl -0.012 7.012 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.158 0.842 33 H 0.127 0.873 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.789 -1.514 -12.321 13.697 hybrid contribution -0.574 0.479 0.498 0.898 sum -6.363 -1.035 -11.824 13.467 Atomic orbital electron populations 1.21782 0.93083 1.02541 1.03322 1.22900 0.94917 0.81058 1.02325 1.86502 1.25281 1.31745 1.84527 1.25177 0.80707 0.94416 0.73205 1.90772 1.59280 1.42637 1.43375 1.22053 0.85849 0.90574 1.06913 1.59931 1.05645 1.46748 1.04313 1.20153 0.98192 0.95022 0.80391 1.21140 1.34474 1.10464 0.90559 0.91773 1.24914 0.94979 0.95235 0.98816 1.69982 1.36665 1.24663 1.21121 0.86527 0.78329 0.80848 0.81925 1.20670 1.21172 1.19618 1.20195 0.90701 0.86163 0.89340 1.68193 1.11132 1.04728 1.32178 1.21438 0.89327 0.96228 0.86414 1.20842 1.00918 0.90459 1.04570 1.16634 1.10421 0.95000 0.90712 1.25233 0.93114 0.93215 0.92551 1.81256 1.10121 1.08976 1.09935 1.21219 0.92014 0.91568 0.98643 1.21320 1.08440 0.90338 0.94639 1.98355 1.84430 1.21234 1.97213 0.90667 0.91442 0.91773 0.91886 0.91237 0.84230 0.87258 0.93850 0.93698 0.92765 0.89547 0.90977 0.88860 0.83197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.29 37.16 0.38 -1.09 16 2 C 0.06 0.84 6.19 37.16 0.23 1.07 16 3 O -0.36 -5.82 10.22 -39.25 -0.40 -6.22 16 4 C 0.42 7.75 7.29 36.01 0.26 8.01 16 5 O -0.48 -9.84 11.34 -18.75 -0.21 -10.05 16 6 C 0.07 1.27 5.43 -4.97 -0.03 1.25 16 7 N -0.45 -8.98 4.29 -175.90 -0.76 -9.74 16 8 C 0.19 4.57 3.65 -4.97 -0.02 4.56 16 9 C -0.53 -13.77 8.56 -34.44 -0.29 -14.07 16 10 H 0.06 1.59 6.78 -52.49 -0.36 1.24 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 13 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 C 0.37 6.73 4.86 -155.13 -0.75 5.98 16 18 N -0.45 -8.50 7.00 -8.34 -0.06 -8.56 16 19 C 0.21 3.26 6.82 -82.16 -0.56 2.70 16 20 C -0.11 -1.44 9.77 36.00 0.35 -1.09 16 21 C -0.12 -1.62 5.75 -106.68 -0.61 -2.23 16 22 C 0.27 3.63 13.82 -22.46 -0.31 3.32 16 23 N -0.43 -6.19 18.54 41.85 0.78 -5.42 16 24 C -0.01 -0.08 9.69 -38.88 -0.38 -0.45 16 25 C -0.12 -1.71 6.17 -39.22 -0.24 -1.95 16 26 Cl -0.04 -0.54 26.44 -51.86 -1.37 -1.91 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 31 H 0.07 1.01 8.13 -51.93 -0.42 0.58 16 32 H 0.14 2.42 6.55 -51.93 -0.34 2.08 16 33 H 0.11 1.57 6.02 -51.93 -0.31 1.26 16 34 H 0.04 1.18 5.53 -51.93 -0.29 0.90 16 35 H 0.04 1.24 7.95 -51.93 -0.41 0.83 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.82 7.07 -51.93 -0.37 0.45 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -30.73 358.98 -7.56 -38.28 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -4.59 Total: -0.26 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -2.07 Total: 7.61 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.70 Total: -48.45 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.61 Total: -16.27 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.37 Total: -1.91 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.73 -7.56 -38.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161697.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.716 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds