Wall clock time and date at job start Tue Mar 31 2020 20:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.46897 * 2 1 4 4 C 1.34226 * 116.99956 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00057 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00064 * 179.97438 * 4 3 2 7 7 N 1.46903 * 109.47213 * 175.77817 * 6 4 3 8 8 C 1.46905 * 110.99408 * 297.58961 * 7 6 4 9 9 C 1.50700 * 109.47568 * 296.20837 * 8 7 6 10 10 H 1.07998 * 119.99430 * 4.54476 * 9 8 7 11 11 C 1.37868 * 120.00472 * 184.54884 * 9 8 7 12 12 N 1.31521 * 119.99708 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00225 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47185 * 89.99874 * 13 11 9 15 15 H 1.48499 * 109.47046 * 209.99825 * 13 11 9 16 16 H 1.48494 * 109.47096 * 329.99671 * 13 11 9 17 17 C 1.38644 * 110.99950 * 61.54167 * 7 6 4 18 18 N 1.32544 * 119.54487 * 252.47194 * 17 7 6 19 19 C 1.31666 * 121.79401 * 179.97438 * 18 17 7 20 20 C 1.50696 * 119.67026 * 180.02562 * 19 18 17 21 21 C 1.39586 * 120.65827 * 0.02562 * 19 18 17 22 22 C 1.43196 * 120.48104 * 179.97438 * 21 19 18 23 23 N 8.22750 * 141.98117 * 264.41430 * 2 1 3 24 24 C 1.40344 * 119.03870 * 359.97438 * 21 19 18 25 25 C 1.37997 * 118.36354 * 359.74691 * 24 21 19 26 26 Cl 1.73601 * 120.38489 * 180.24239 * 25 24 21 27 27 H 1.08999 * 109.47296 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47809 * 300.00184 * 1 2 3 29 29 H 1.09002 * 109.47167 * 59.99957 * 1 2 3 30 30 H 1.09000 * 109.47376 * 240.00132 * 2 1 3 31 31 H 1.08997 * 109.46606 * 119.99606 * 2 1 3 32 32 H 1.09001 * 109.47143 * 55.77893 * 6 4 3 33 33 H 1.08994 * 109.47163 * 295.77757 * 6 4 3 34 34 H 1.08995 * 109.47319 * 56.21430 * 8 7 6 35 35 H 1.09006 * 109.46463 * 176.21235 * 8 7 6 36 36 H 0.97001 * 119.99813 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.47093 * 89.99490 * 20 19 18 38 38 H 1.09001 * 109.47173 * 209.99804 * 20 19 18 39 39 H 1.09002 * 109.47384 * 329.99775 * 20 19 18 40 40 H 1.08001 * 120.81833 * 179.97438 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 7 5.3841 2.8621 0.1027 8 6 5.7914 2.2360 1.3677 9 6 5.3475 3.0984 2.5210 10 1 4.7528 3.9810 2.3376 11 6 5.7007 2.7608 3.8102 12 7 6.4255 1.6862 4.0335 13 14 5.1498 3.8294 5.2398 14 1 3.8360 3.3499 5.7388 15 1 6.1529 3.7506 6.3320 16 1 5.0228 5.2374 4.7852 17 6 5.9243 2.1882 -0.9819 18 7 6.4103 0.9663 -0.8161 19 6 6.9328 0.2861 -1.8151 20 6 7.4710 -1.1004 -1.5727 21 6 6.9930 0.8365 -3.0964 22 6 7.5626 0.0936 -4.1800 23 7 8.0117 -0.4932 -5.0434 24 6 6.4874 2.1286 -3.3073 25 6 5.9434 2.8031 -2.2333 26 17 5.2971 4.4014 -2.4363 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3635 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 3.5250 3.4946 0.8492 33 1 3.6470 3.4435 -0.9258 34 1 5.3301 1.2520 1.4511 35 1 6.8763 2.1316 1.3885 36 1 6.6742 1.4489 4.9405 37 1 6.6769 -1.8307 -1.7277 38 1 8.2881 -1.2993 -2.2661 39 1 7.8375 -1.1740 -0.5487 40 1 6.5197 2.5823 -4.2869 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157161697.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:39 Heat of formation + Delta-G solvation = -20.050827 kcal Electronic energy + Delta-G solvation = -27318.648048 eV Core-core repulsion = 23353.056342 eV Total energy + Delta-G solvation = -3965.591706 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.31298 -41.18664 -38.90773 -37.74911 -37.50070 -36.91428 -34.77042 -33.94297 -33.02505 -32.51653 -29.97851 -28.96381 -28.13924 -25.33315 -24.47977 -23.32984 -23.01681 -21.79975 -20.19557 -19.13260 -18.52624 -18.39233 -17.73939 -17.43531 -16.90464 -16.71527 -16.21414 -15.90663 -15.45206 -15.38095 -14.96562 -14.66494 -14.36210 -14.26144 -14.16204 -14.14182 -13.90608 -13.63302 -13.52802 -13.35678 -13.21024 -13.04345 -12.81935 -12.75274 -12.55902 -12.45421 -12.41259 -12.05958 -12.02266 -11.73560 -11.48614 -11.35821 -10.98706 -10.59176 -10.56250 -10.16214 -9.19574 -8.15848 -6.27082 -0.63988 -0.02412 0.93626 1.23341 1.45402 1.46751 1.53943 1.57633 1.64125 1.85150 2.36755 2.51898 2.66689 2.75792 3.18952 3.25429 3.48281 3.67943 3.85560 3.99726 4.09777 4.11422 4.14254 4.34163 4.34492 4.46526 4.50948 4.59961 4.71853 4.82087 4.86410 4.93610 5.08711 5.14235 5.25755 5.38532 5.52174 5.61059 5.81025 6.00185 6.29920 6.37280 6.75684 6.83714 6.95980 7.41439 8.95132 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009074 B = 0.004724 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.101562 B = 5926.039086 C = 6746.982323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.055 3.945 3 O -0.362 6.362 4 C 0.422 3.578 5 O -0.505 6.505 6 C 0.073 3.927 7 N -0.454 5.454 8 C 0.214 3.786 9 C -0.534 4.534 10 H 0.077 0.923 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.965 3.035 14 H -0.274 1.274 15 H -0.288 1.288 16 H -0.257 1.257 17 C 0.342 3.658 18 N -0.491 5.491 19 C 0.196 3.804 20 C -0.107 4.107 21 C -0.104 4.104 22 C 0.293 3.707 23 N -0.439 5.439 24 C 0.012 3.988 25 C -0.113 4.113 26 Cl -0.022 7.022 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.012 0.988 35 H 0.003 0.997 36 H 0.262 0.738 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.186 0.806 -13.817 16.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.019 4.019 3 O -0.278 6.278 4 C 0.264 3.736 5 O -0.392 6.392 6 C -0.054 4.054 7 N -0.171 5.171 8 C 0.089 3.911 9 C -0.573 4.573 10 H 0.095 0.905 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.790 3.210 14 H -0.200 1.200 15 H -0.214 1.214 16 H -0.181 1.181 17 C 0.109 3.891 18 N -0.204 5.204 19 C 0.052 3.948 20 C -0.164 4.164 21 C -0.111 4.111 22 C -0.022 4.022 23 N -0.115 5.115 24 C -0.016 4.016 25 C -0.145 4.145 26 Cl 0.007 6.993 27 H 0.117 0.883 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.030 0.970 35 H 0.021 0.979 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -7.161 -0.224 -14.140 15.851 hybrid contribution -0.171 0.010 0.922 0.937 sum -7.332 -0.213 -13.218 15.117 Atomic orbital electron populations 1.21796 0.89839 1.04307 1.03854 1.23187 0.97392 0.79700 1.01630 1.86497 1.23994 1.33327 1.83987 1.25352 0.81261 0.94470 0.72545 1.90767 1.60091 1.43574 1.44735 1.22182 0.84604 0.90321 1.08284 1.59841 1.07203 1.46962 1.03069 1.19480 0.95082 0.93751 0.82792 1.21557 1.33876 1.10662 0.91168 0.90538 1.25846 0.95038 0.96433 1.01833 1.70142 1.38407 1.26752 1.21589 0.85441 0.77784 0.79585 0.78201 1.19968 1.21415 1.18098 1.20266 0.92005 0.86706 0.90076 1.68062 1.12359 1.05819 1.34156 1.21743 0.89437 0.96821 0.86752 1.20867 1.01648 0.89732 1.04158 1.16568 1.09447 0.95263 0.89856 1.24915 0.92598 0.92692 0.91991 1.81297 1.10442 1.09311 1.10484 1.21596 0.89755 0.90677 0.99558 1.21264 1.08395 0.91124 0.93718 1.98360 1.84136 1.19809 1.97037 0.88274 0.91511 0.90570 0.91589 0.93053 0.84428 0.84209 0.97022 0.97927 0.92915 0.88657 0.89149 0.90378 0.79208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 10.29 71.98 0.74 -1.77 16 2 C 0.05 1.46 6.19 71.98 0.45 1.90 16 3 O -0.36 -11.51 10.22 -51.38 -0.53 -12.03 16 4 C 0.42 15.68 7.29 71.24 0.52 16.20 16 5 O -0.50 -21.75 11.34 21.95 0.25 -21.50 16 6 C 0.07 2.53 5.43 85.56 0.46 2.99 16 7 N -0.45 -18.51 4.29 -710.43 -3.05 -21.56 16 8 C 0.21 11.08 3.65 85.56 0.31 11.39 16 9 C -0.53 -28.53 8.56 25.60 0.22 -28.31 16 10 H 0.08 3.79 6.78 -2.91 -0.02 3.77 16 11 C 0.01 0.41 5.46 84.65 0.46 0.87 16 12 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 13 Si 0.97 42.64 29.54 68.60 2.03 44.67 16 14 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 15 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 17 C 0.34 12.61 4.86 133.22 0.65 13.25 16 18 N -0.49 -19.24 7.00 -180.29 -1.26 -20.50 16 19 C 0.20 6.11 6.82 42.91 0.29 6.40 16 20 C -0.11 -2.82 9.77 71.23 0.70 -2.13 16 21 C -0.10 -2.63 5.75 -21.20 -0.12 -2.75 16 22 C 0.29 7.08 13.82 88.33 1.22 8.30 16 23 N -0.44 -11.74 18.54 19.01 0.35 -11.39 16 24 C 0.01 0.27 9.69 22.73 0.22 0.49 16 25 C -0.11 -3.18 6.17 22.50 0.14 -3.04 16 26 Cl -0.02 -0.53 26.44 -2.72 -0.07 -0.61 16 27 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.70 8.13 -2.39 -0.02 1.68 16 31 H 0.05 1.54 8.13 -2.39 -0.02 1.52 16 32 H 0.14 4.75 6.55 -2.39 -0.02 4.73 16 33 H 0.14 3.85 6.02 -2.39 -0.01 3.84 16 34 H 0.01 0.69 5.53 -2.39 -0.01 0.68 16 35 H 0.00 0.15 7.95 -2.38 -0.02 0.13 16 36 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 37 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.09 2.00 7.07 -2.39 -0.02 1.98 16 39 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.19 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -69.42 358.98 5.35 -64.06 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.09 Total: 10.30 kcal Atomic # 6 Polarization: 17.54 SS G_CDS: 6.26 Total: 23.80 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -3.68 Total: -108.69 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -0.28 Total: -33.53 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.07 Total: -0.61 kcal Total: -69.42 5.35 -64.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161697.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.013 kcal (2) G-P(sol) polarization free energy of solvation -69.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds