Wall clock time and date at job start Tue Mar 31 2020 20:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45196 * 109.47593 * 2 1 4 4 C 1.34221 * 117.00125 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00180 * 0.27934 * 4 3 2 6 6 C 1.50711 * 119.99853 * 179.97438 * 4 3 2 7 7 N 1.46896 * 109.46738 * 174.44312 * 6 4 3 8 8 C 1.46904 * 111.00306 * 67.91777 * 7 6 4 9 9 C 1.52998 * 109.47053 * 75.84376 * 8 7 6 10 10 C 1.47200 * 109.46663 * 180.41570 * 9 8 7 11 11 N 7.38206 * 138.59103 * 297.55789 * 2 1 3 12 12 C 1.38406 * 111.00151 * 303.95940 * 7 6 4 13 13 N 1.32745 * 119.43886 * 106.05940 * 12 7 6 14 14 C 1.31466 * 121.74494 * 179.75254 * 13 12 7 15 15 C 1.40796 * 120.38617 * 0.51934 * 14 13 12 16 16 C 1.41204 * 120.56335 * 179.76854 * 15 14 13 17 17 H 1.08001 * 119.99690 * 150.06734 * 16 15 14 18 18 C 1.39862 * 119.99844 * 330.06582 * 16 15 14 19 19 N 1.30906 * 119.99649 * 158.21174 * 18 16 15 20 20 Si 1.86803 * 120.00354 * 338.21035 * 18 16 15 21 21 H 1.48494 * 109.46950 * 89.77263 * 20 18 16 22 22 H 1.48496 * 109.47042 * 209.77877 * 20 18 16 23 23 H 1.48502 * 109.46835 * 329.77468 * 20 18 16 24 24 C 1.41281 * 118.86789 * 359.74349 * 15 14 13 25 25 C 1.36662 * 118.40382 * 0.02562 * 24 15 14 26 26 Cl 1.73600 * 120.26466 * 179.97438 * 25 24 15 27 27 H 1.08993 * 109.47377 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46791 * 300.00187 * 1 2 3 29 29 H 1.09003 * 109.46640 * 59.99880 * 1 2 3 30 30 H 1.09003 * 109.46898 * 240.00022 * 2 1 3 31 31 H 1.08998 * 109.47011 * 120.00395 * 2 1 3 32 32 H 1.08998 * 109.47006 * 294.44117 * 6 4 3 33 33 H 1.08998 * 109.46854 * 54.44418 * 6 4 3 34 34 H 1.08995 * 109.47168 * 195.84691 * 8 7 6 35 35 H 1.08997 * 109.46629 * 315.84057 * 8 7 6 36 36 H 1.09004 * 109.46810 * 300.41074 * 9 8 7 37 37 H 1.08994 * 109.47501 * 60.41367 * 9 8 7 38 38 H 1.08002 * 119.81101 * 180.24909 * 14 13 12 39 39 H 0.97001 * 119.99590 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.79608 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 -0.0041 6 6 3.9209 2.9373 0.0000 7 7 5.3818 2.8629 0.1348 8 6 5.9919 2.2738 -1.0647 9 6 6.0013 3.3079 -2.1922 10 6 6.6037 2.7144 -3.3971 11 7 7.0666 2.2590 -4.3287 12 6 5.7397 2.1577 1.2707 13 7 6.2236 0.9275 1.1495 14 6 6.5822 0.2189 2.1972 15 6 6.4508 0.7495 3.4947 16 6 6.8303 -0.0101 4.6229 17 1 7.1908 0.4864 5.5117 18 6 6.7393 -1.4054 4.5893 19 7 7.4565 -2.1280 5.4121 20 14 5.5943 -2.2377 3.3703 21 1 6.3244 -2.4981 2.1038 22 1 5.1156 -3.5232 3.9392 23 1 4.4326 -1.3533 3.0992 24 6 5.9332 2.0551 3.6485 25 6 5.5799 2.7507 2.5265 26 17 4.9383 4.3583 2.6596 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.6673 3.4350 -0.9360 33 1 3.5072 3.5019 0.8355 34 1 7.0147 1.9711 -0.8407 35 1 5.4150 1.4028 -1.3752 36 1 4.9789 3.6160 -2.4112 37 1 6.5843 4.1759 -1.8844 38 1 6.9759 -0.7777 2.0621 39 1 7.3931 -3.0957 5.3890 40 1 5.8195 2.4928 4.6293 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157161699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:29 Heat of formation + Delta-G solvation = -16.422472 kcal Electronic energy + Delta-G solvation = -27339.671187 eV Core-core repulsion = 23374.236818 eV Total energy + Delta-G solvation = -3965.434369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.71060 -39.17513 -37.41422 -36.54106 -35.88567 -35.60829 -33.92919 -31.90959 -31.67045 -31.30017 -29.83438 -27.73767 -25.07806 -23.75188 -22.85620 -22.11651 -21.27072 -20.13231 -18.12236 -17.90365 -17.38561 -16.69022 -16.53351 -15.98068 -15.75366 -15.41820 -14.90935 -14.66477 -14.45183 -14.01294 -13.68546 -13.42928 -13.21327 -13.02490 -12.86792 -12.79007 -12.44394 -12.38710 -12.17223 -12.00883 -11.76696 -11.59621 -11.54756 -11.44755 -11.08508 -11.05278 -10.90882 -10.74020 -10.55443 -10.42945 -10.33302 -10.11594 -9.54531 -8.89117 -8.56248 -8.36260 -7.54657 -7.28955 -4.77127 2.01487 2.32515 2.50151 2.74399 2.81273 2.85864 2.87511 2.99515 3.04640 3.14210 3.74702 3.76277 4.15389 4.42419 4.85191 4.89761 4.98954 5.01565 5.07060 5.19936 5.23619 5.26579 5.47716 5.58579 5.65273 5.71419 5.73811 5.80970 5.87669 6.09874 6.15867 6.31246 6.44253 6.62066 6.65965 6.86108 6.89638 7.27106 7.35649 7.58430 7.75901 7.95415 8.04870 8.19594 8.37305 9.14552 9.70587 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.008642 B = 0.005024 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.223792 B = 5572.315607 C = 6179.979253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.367 6.367 4 C 0.415 3.585 5 O -0.467 6.467 6 C 0.054 3.946 7 N -0.429 5.429 8 C 0.062 3.938 9 C -0.029 4.029 10 C 0.216 3.784 11 N -0.446 5.446 12 C 0.135 3.865 13 N -0.419 5.419 14 C -0.017 4.017 15 C 0.049 3.951 16 C -0.421 4.421 17 H 0.099 0.901 18 C 0.086 3.914 19 N -0.781 5.781 20 Si 0.908 3.092 21 H -0.258 1.258 22 H -0.284 1.284 23 H -0.250 1.250 24 C -0.172 4.172 25 C -0.011 4.011 26 Cl -0.093 7.093 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.138 0.862 39 H 0.292 0.708 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.510 7.323 -7.193 14.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 O -0.284 6.284 4 C 0.254 3.746 5 O -0.351 6.351 6 C -0.075 4.075 7 N -0.148 5.148 8 C -0.067 4.067 9 C -0.070 4.070 10 C -0.102 4.102 11 N -0.123 5.123 12 C -0.093 4.093 13 N -0.129 5.129 14 C -0.183 4.183 15 C 0.044 3.956 16 C -0.448 4.448 17 H 0.117 0.883 18 C -0.137 4.137 19 N -0.403 5.403 20 Si 0.733 3.267 21 H -0.184 1.184 22 H -0.210 1.210 23 H -0.174 1.174 24 C -0.198 4.198 25 C -0.041 4.041 26 Cl -0.065 7.065 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.121 0.879 37 H 0.135 0.865 38 H 0.155 0.845 39 H 0.103 0.897 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.300 6.383 -9.216 14.566 hybrid contribution -1.005 -0.885 0.902 1.614 sum -10.304 5.497 -8.314 14.336 Atomic orbital electron populations 1.21780 0.92940 1.02681 1.03274 1.22920 0.95029 0.80994 1.02407 1.86507 1.25532 1.31845 1.84547 1.25333 0.80728 0.94730 0.73824 1.90830 1.59249 1.42469 1.42564 1.22446 0.88622 0.90208 1.06180 1.59799 1.04225 1.49047 1.01771 1.21954 1.02851 0.94470 0.87444 1.19387 1.01521 0.99591 0.86471 1.29128 0.93324 0.93399 0.94360 1.81184 1.09809 1.09083 1.12250 1.18304 1.12920 0.90535 0.87576 1.67204 1.07825 1.03221 1.34659 1.22552 1.07691 1.00365 0.87660 1.18558 0.90651 0.92281 0.94148 1.19436 1.34309 0.90829 1.00258 0.88319 1.26204 0.94283 0.97635 0.95537 1.69725 1.29574 1.08617 1.32371 0.86386 0.81972 0.78429 0.79915 1.18366 1.21026 1.17370 1.20967 1.05767 0.96633 0.96433 1.20952 1.03098 0.85652 0.94428 1.98273 1.85409 1.24581 1.98253 0.90577 0.91510 0.91687 0.91644 0.91497 0.86598 0.86190 0.88800 0.91199 0.87879 0.86453 0.84471 0.89722 0.85908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.29 37.16 0.38 -1.02 16 2 C 0.06 0.79 6.19 37.16 0.23 1.02 16 3 O -0.37 -5.32 10.22 -39.23 -0.40 -5.72 16 4 C 0.41 6.64 7.20 36.01 0.26 6.90 16 5 O -0.47 -9.17 11.37 -18.75 -0.21 -9.38 16 6 C 0.05 0.71 5.58 -4.97 -0.03 0.68 16 7 N -0.43 -6.54 4.18 -174.44 -0.73 -7.27 16 8 C 0.06 0.88 3.95 -3.82 -0.02 0.86 16 9 C -0.03 -0.28 5.82 -29.52 -0.17 -0.45 16 10 C 0.22 2.71 15.43 -20.77 -0.32 2.39 16 11 N -0.45 -6.90 18.54 42.14 0.78 -6.11 16 12 C 0.13 2.63 4.73 -155.05 -0.73 1.90 16 13 N -0.42 -9.26 6.78 -11.75 -0.08 -9.34 16 14 C -0.02 -0.41 8.59 -16.74 -0.14 -0.55 16 15 C 0.05 1.16 5.07 -106.65 -0.54 0.62 16 16 C -0.42 -10.33 9.55 -37.85 -0.36 -10.69 16 17 H 0.10 2.50 8.06 -52.49 -0.42 2.08 16 18 C 0.09 2.07 5.35 -17.34 -0.09 1.98 16 19 N -0.78 -19.02 13.93 55.54 0.77 -18.25 16 20 Si 0.91 19.83 24.86 -169.99 -4.23 15.61 16 21 H -0.26 -5.66 6.42 56.52 0.36 -5.30 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.25 -5.80 7.11 56.52 0.40 -5.39 16 24 C -0.17 -3.67 9.66 -39.00 -0.38 -4.05 16 25 C -0.01 -0.21 6.17 -39.57 -0.24 -0.46 16 26 Cl -0.09 -1.47 26.52 -51.86 -1.38 -2.85 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.84 8.13 -51.93 -0.42 0.41 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.12 1.03 6.67 -51.93 -0.35 0.69 16 33 H 0.12 1.57 6.21 -51.93 -0.32 1.24 16 34 H 0.09 1.53 7.46 -51.93 -0.39 1.15 16 35 H 0.07 1.13 5.80 -51.93 -0.30 0.83 16 36 H 0.10 0.72 6.80 -51.93 -0.35 0.37 16 37 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.14 3.27 4.86 -52.49 -0.26 3.02 16 39 H 0.29 6.42 8.30 -40.82 -0.34 6.08 16 40 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 351.67 15.07 5.30 5.30 Total: -1.00 -28.76 351.67 -6.85 -35.60 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -4.52 Total: 3.29 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.16 Total: -0.87 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.75 Total: -40.98 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.61 Total: -15.10 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.23 Total: 15.61 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -1.38 Total: -2.85 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.76 -6.85 -35.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.180 kcal (2) G-P(sol) polarization free energy of solvation -28.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds