Wall clock time and date at job start Tue Mar 31 2020 20:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45196 * 109.47593 * 2 1 4 4 C 1.34221 * 117.00125 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00180 * 0.27934 * 4 3 2 6 6 C 1.50711 * 119.99853 * 179.97438 * 4 3 2 7 7 N 1.46896 * 109.46738 * 174.44312 * 6 4 3 8 8 C 1.46904 * 111.00306 * 67.91777 * 7 6 4 9 9 C 1.52998 * 109.47053 * 75.84376 * 8 7 6 10 10 C 1.47200 * 109.46663 * 180.41570 * 9 8 7 11 11 N 7.38206 * 138.59103 * 297.55789 * 2 1 3 12 12 C 1.38406 * 111.00151 * 303.95940 * 7 6 4 13 13 N 1.32745 * 119.43886 * 106.05940 * 12 7 6 14 14 C 1.31466 * 121.74494 * 179.75254 * 13 12 7 15 15 C 1.40796 * 120.38617 * 0.51934 * 14 13 12 16 16 C 1.41204 * 120.56335 * 179.76854 * 15 14 13 17 17 H 1.08001 * 119.99690 * 150.06734 * 16 15 14 18 18 C 1.39862 * 119.99844 * 330.06582 * 16 15 14 19 19 N 1.30906 * 119.99649 * 158.21174 * 18 16 15 20 20 Si 1.86803 * 120.00354 * 338.21035 * 18 16 15 21 21 H 1.48494 * 109.46950 * 89.77263 * 20 18 16 22 22 H 1.48496 * 109.47042 * 209.77877 * 20 18 16 23 23 H 1.48502 * 109.46835 * 329.77468 * 20 18 16 24 24 C 1.41281 * 118.86789 * 359.74349 * 15 14 13 25 25 C 1.36662 * 118.40382 * 0.02562 * 24 15 14 26 26 Cl 1.73600 * 120.26466 * 179.97438 * 25 24 15 27 27 H 1.08993 * 109.47377 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46791 * 300.00187 * 1 2 3 29 29 H 1.09003 * 109.46640 * 59.99880 * 1 2 3 30 30 H 1.09003 * 109.46898 * 240.00022 * 2 1 3 31 31 H 1.08998 * 109.47011 * 120.00395 * 2 1 3 32 32 H 1.08998 * 109.47006 * 294.44117 * 6 4 3 33 33 H 1.08998 * 109.46854 * 54.44418 * 6 4 3 34 34 H 1.08995 * 109.47168 * 195.84691 * 8 7 6 35 35 H 1.08997 * 109.46629 * 315.84057 * 8 7 6 36 36 H 1.09004 * 109.46810 * 300.41074 * 9 8 7 37 37 H 1.08994 * 109.47501 * 60.41367 * 9 8 7 38 38 H 1.08002 * 119.81101 * 180.24909 * 14 13 12 39 39 H 0.97001 * 119.99590 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.79608 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 -0.0041 6 6 3.9209 2.9373 0.0000 7 7 5.3818 2.8629 0.1348 8 6 5.9919 2.2738 -1.0647 9 6 6.0013 3.3079 -2.1922 10 6 6.6037 2.7144 -3.3971 11 7 7.0666 2.2590 -4.3287 12 6 5.7397 2.1577 1.2707 13 7 6.2236 0.9275 1.1495 14 6 6.5822 0.2189 2.1972 15 6 6.4508 0.7495 3.4947 16 6 6.8303 -0.0101 4.6229 17 1 7.1908 0.4864 5.5117 18 6 6.7393 -1.4054 4.5893 19 7 7.4565 -2.1280 5.4121 20 14 5.5943 -2.2377 3.3703 21 1 6.3244 -2.4981 2.1038 22 1 5.1156 -3.5232 3.9392 23 1 4.4326 -1.3533 3.0992 24 6 5.9332 2.0551 3.6485 25 6 5.5799 2.7507 2.5265 26 17 4.9383 4.3583 2.6596 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.6673 3.4350 -0.9360 33 1 3.5072 3.5019 0.8355 34 1 7.0147 1.9711 -0.8407 35 1 5.4150 1.4028 -1.3752 36 1 4.9789 3.6160 -2.4112 37 1 6.5843 4.1759 -1.8844 38 1 6.9759 -0.7777 2.0621 39 1 7.3931 -3.0957 5.3890 40 1 5.8195 2.4928 4.6293 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157161699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:28 Heat of formation + Delta-G solvation = -33.356080 kcal Electronic energy + Delta-G solvation = -27340.405483 eV Core-core repulsion = 23374.236818 eV Total energy + Delta-G solvation = -3966.168665 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.04150 -40.66403 -38.72893 -37.67363 -37.35606 -36.93193 -35.64921 -33.20148 -32.94886 -32.59455 -31.34051 -29.01969 -26.62125 -25.07330 -24.08165 -23.69126 -22.61223 -21.49230 -19.77251 -19.23433 -18.59407 -17.94580 -17.83096 -17.39607 -17.17172 -16.72030 -16.28745 -16.10932 -15.87212 -15.12718 -15.07460 -14.88391 -14.63191 -14.37792 -14.26102 -13.89818 -13.64888 -13.53880 -13.45247 -13.29889 -13.08885 -12.91141 -12.84840 -12.78779 -12.53900 -12.50391 -12.37597 -12.06327 -11.89129 -11.72018 -11.66964 -11.49383 -11.26108 -10.45205 -10.19912 -10.00030 -9.14240 -9.09176 -6.60594 0.32690 0.59784 1.20006 1.23601 1.27459 1.32385 1.34495 1.71793 1.76285 1.84832 1.97119 2.38352 2.63788 3.23486 3.38772 3.79617 3.88222 3.94447 4.04011 4.08919 4.22504 4.28636 4.29382 4.34452 4.44157 4.57123 4.71328 4.73396 4.81812 4.84736 4.89489 4.99434 5.12223 5.13682 5.23254 5.40329 5.52388 5.64603 5.77741 6.03814 6.17036 6.44750 6.57112 6.62772 6.82285 7.42641 7.97139 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.008642 B = 0.005024 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.223792 B = 5572.315607 C = 6179.979253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.055 3.945 3 O -0.361 6.361 4 C 0.410 3.590 5 O -0.511 6.511 6 C 0.055 3.945 7 N -0.422 5.422 8 C 0.065 3.935 9 C -0.014 4.014 10 C 0.240 3.760 11 N -0.502 5.502 12 C 0.163 3.837 13 N -0.435 5.435 14 C -0.036 4.036 15 C 0.037 3.963 16 C -0.455 4.455 17 H 0.078 0.922 18 C 0.067 3.933 19 N -0.816 5.816 20 Si 0.952 3.048 21 H -0.266 1.266 22 H -0.264 1.264 23 H -0.273 1.273 24 C -0.170 4.170 25 C -0.021 4.021 26 Cl -0.048 7.048 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.173 0.827 33 H 0.129 0.871 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.125 0.875 39 H 0.300 0.700 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.951 10.281 -9.024 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.252 3.748 5 O -0.398 6.398 6 C -0.073 4.073 7 N -0.141 5.141 8 C -0.064 4.064 9 C -0.054 4.054 10 C -0.077 4.077 11 N -0.180 5.180 12 C -0.068 4.068 13 N -0.145 5.145 14 C -0.199 4.199 15 C 0.031 3.969 16 C -0.484 4.484 17 H 0.096 0.904 18 C -0.153 4.153 19 N -0.440 5.440 20 Si 0.777 3.223 21 H -0.192 1.192 22 H -0.190 1.190 23 H -0.198 1.198 24 C -0.197 4.197 25 C -0.051 4.051 26 Cl -0.020 7.020 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.191 0.809 33 H 0.146 0.854 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.164 0.836 37 H 0.165 0.835 38 H 0.142 0.858 39 H 0.111 0.889 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.747 9.320 -11.034 18.617 hybrid contribution -0.399 -1.482 1.282 2.000 sum -12.146 7.838 -9.751 17.437 Atomic orbital electron populations 1.21785 0.89788 1.04152 1.04057 1.23114 0.97477 0.80200 1.01170 1.86507 1.24702 1.32564 1.84006 1.25908 0.80973 0.95364 0.72604 1.90847 1.60211 1.44053 1.44648 1.22724 0.86191 0.88874 1.09538 1.59797 1.06119 1.47442 1.00737 1.21860 1.00816 0.95539 0.88198 1.19488 1.04358 0.98343 0.83210 1.29595 0.91919 0.92068 0.94120 1.81219 1.11840 1.10627 1.14349 1.18859 1.09116 0.89441 0.89376 1.67273 1.08705 1.04343 1.34227 1.22435 1.08778 1.00464 0.88174 1.18623 0.91150 0.93344 0.93736 1.19352 1.37382 0.91444 1.00250 0.90376 1.26520 0.94731 0.97746 0.96275 1.69725 1.31050 1.09264 1.34010 0.85738 0.79895 0.78141 0.78549 1.19175 1.18951 1.19782 1.21193 1.04700 0.95963 0.97811 1.21008 1.02637 0.87724 0.93779 1.98284 1.84570 1.20919 1.98178 0.88829 0.91341 0.90189 0.91717 0.94053 0.80939 0.85353 0.91499 0.93113 0.83627 0.83547 0.85819 0.88887 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 10.29 71.98 0.74 -1.54 16 2 C 0.05 1.36 6.19 71.98 0.45 1.80 16 3 O -0.36 -9.56 10.22 -51.33 -0.52 -10.09 16 4 C 0.41 12.14 7.20 71.24 0.51 12.66 16 5 O -0.51 -19.71 11.37 21.98 0.25 -19.46 16 6 C 0.05 1.18 5.58 85.56 0.48 1.66 16 7 N -0.42 -11.37 4.18 -705.81 -2.95 -14.32 16 8 C 0.06 1.67 3.95 86.30 0.34 2.01 16 9 C -0.01 -0.21 5.82 28.79 0.17 -0.04 16 10 C 0.24 5.39 15.43 89.45 1.38 6.77 16 11 N -0.50 -14.90 18.54 20.00 0.37 -14.53 16 12 C 0.16 6.10 4.73 133.32 0.63 6.73 16 13 N -0.44 -19.33 6.78 -191.08 -1.30 -20.63 16 14 C -0.04 -1.77 8.59 85.37 0.73 -1.04 16 15 C 0.04 1.78 5.07 -21.18 -0.11 1.67 16 16 C -0.46 -23.61 9.55 23.39 0.22 -23.38 16 17 H 0.08 4.23 8.06 -2.91 -0.02 4.21 16 18 C 0.07 3.36 5.35 85.22 0.46 3.82 16 19 N -0.82 -41.57 13.93 21.82 0.30 -41.27 16 20 Si 0.95 42.77 24.86 68.60 1.71 44.48 16 21 H -0.27 -12.08 6.42 99.48 0.64 -11.44 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 24 C -0.17 -7.22 9.66 22.65 0.22 -7.00 16 25 C -0.02 -0.77 6.17 22.28 0.14 -0.64 16 26 Cl -0.05 -1.34 26.52 -2.72 -0.07 -1.41 16 27 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 31 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.17 1.84 6.67 -2.39 -0.02 1.82 16 33 H 0.13 2.68 6.21 -2.39 -0.01 2.66 16 34 H 0.07 2.10 7.46 -2.39 -0.02 2.09 16 35 H 0.05 1.55 5.80 -2.39 -0.01 1.53 16 36 H 0.15 1.00 6.80 -2.38 -0.02 0.98 16 37 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.12 6.23 4.86 -2.91 -0.01 6.22 16 39 H 0.30 13.71 8.30 -92.71 -0.77 12.94 16 40 H 0.13 5.28 8.06 -2.91 -0.02 5.26 16 Total: -1.00 -67.61 351.67 5.17 -62.44 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.03 Total: 11.33 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 6.36 Total: 3.47 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -3.57 Total: -90.75 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.27 Total: -29.55 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.71 Total: 44.48 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.07 Total: -1.41 kcal Total: -67.61 5.17 -62.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.080 kcal (2) G-P(sol) polarization free energy of solvation -67.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds