Wall clock time and date at job start Tue Mar 31 2020 20:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34841 * 116.99975 * 2 1 4 4 O 1.21598 * 120.00067 * 0.02562 * 3 2 1 5 5 C 1.46765 * 120.00049 * 180.02562 * 3 2 1 6 6 C 1.36419 * 126.83513 * 359.97383 * 5 3 2 7 7 N 1.35601 * 109.70608 * 180.02562 * 6 5 3 8 8 H 0.97001 * 124.71503 * 179.97438 * 7 6 5 9 9 C 1.37669 * 110.56400 * 0.02562 * 7 6 5 10 10 N 1.32808 * 132.89265 * 180.29759 * 9 7 6 11 11 C 1.32156 * 121.45847 * 180.22479 * 10 9 7 12 12 N 1.39162 * 119.32165 * 179.71150 * 11 10 9 13 13 C 1.38369 * 120.00089 * 185.87164 * 12 11 10 14 14 C 1.38979 * 119.99787 * 62.34929 * 13 12 11 15 15 H 1.08007 * 119.99653 * 198.17253 * 14 13 12 16 16 C 1.40843 * 120.00203 * 18.17343 * 14 13 12 17 17 N 1.30333 * 119.99998 * 8.82796 * 16 14 13 18 18 Si 1.86794 * 120.00324 * 188.83194 * 16 14 13 19 19 H 1.48498 * 109.47390 * 89.99896 * 18 16 14 20 20 H 1.48502 * 109.47382 * 210.00086 * 18 16 14 21 21 H 1.48501 * 109.47098 * 329.99774 * 18 16 14 22 22 C 1.41146 * 120.00255 * 242.35373 * 13 12 11 23 23 C 1.43195 * 120.00062 * 174.69659 * 22 13 12 24 24 N 9.50113 * 174.11765 * 51.67670 * 4 1 2 25 25 C 1.43198 * 119.99935 * 354.41164 * 22 13 12 26 26 N 9.14582 * 159.69342 * 111.73124 * 3 1 2 27 27 C 1.39425 * 121.35745 * 359.43646 * 11 10 9 28 28 C 1.37061 * 119.40666 * 0.27964 * 27 11 10 29 29 C 1.39514 * 118.27382 * 359.97438 * 28 27 11 30 30 H 1.09002 * 109.46931 * 299.99480 * 1 2 3 31 31 H 1.09000 * 109.47192 * 59.99663 * 1 2 3 32 32 H 1.09001 * 109.46664 * 180.02562 * 1 2 3 33 33 H 1.07999 * 125.15020 * 0.04366 * 6 5 3 34 34 H 0.96998 * 120.00097 * 5.88135 * 12 11 10 35 35 H 0.96999 * 120.00445 * 184.99158 * 17 16 14 36 36 H 1.07995 * 120.29321 * 180.25110 * 27 11 10 37 37 H 1.07996 * 120.86589 * 179.97438 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4019 2.2213 0.0005 5 6 3.5298 1.2783 -0.0006 6 6 4.4037 0.2307 -0.0006 7 7 5.6769 0.6974 -0.0007 8 1 6.4700 0.1389 -0.0003 9 6 5.6873 2.0741 0.0000 10 7 6.6671 2.9706 -0.0049 11 6 6.4150 4.2679 0.0016 12 7 7.4760 5.1683 0.0022 13 6 7.2326 6.5243 0.1314 14 6 6.6357 7.0161 1.2861 15 1 6.1805 7.9956 1.2835 16 6 6.6244 6.2374 2.4596 17 7 7.3180 5.1355 2.5172 18 14 5.6153 6.7838 3.9335 19 1 4.2485 6.2111 3.8375 20 1 6.2645 6.3085 5.1817 21 1 5.5305 8.2662 3.9533 22 6 7.5904 7.4079 -0.9094 23 6 7.2369 8.7931 -0.8259 24 7 6.9568 9.8916 -0.7618 25 6 8.3122 6.9205 -2.0461 26 7 8.8861 6.5319 -2.9484 27 6 5.1078 4.7529 0.0020 28 6 4.0615 3.8676 0.0014 29 6 4.3506 2.5028 -0.0001 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 4.1239 -0.8124 -0.0009 34 1 8.3862 4.8454 -0.0881 35 1 7.2539 4.5622 3.2970 36 1 4.9215 5.8167 0.0032 37 1 3.0397 4.2174 0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158211502.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:01 Heat of formation + Delta-G solvation = 54.531323 kcal Electronic energy + Delta-G solvation = -27460.122510 eV Core-core repulsion = 23396.657435 eV Total energy + Delta-G solvation = -4063.465075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.096 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43262 -39.92024 -38.71422 -36.59888 -36.25393 -35.14854 -34.72124 -33.46724 -32.61302 -30.65048 -30.22698 -28.15354 -27.25508 -27.19981 -23.43204 -23.20982 -22.60441 -21.06744 -19.94627 -19.14202 -18.21021 -17.37722 -17.14464 -16.89611 -16.30655 -16.25945 -16.15178 -15.81757 -15.06037 -14.81703 -14.26674 -13.79414 -13.58466 -13.42798 -13.23566 -12.84883 -12.68092 -12.59530 -12.44046 -12.28409 -12.22388 -11.90775 -11.71088 -11.62504 -11.56914 -11.54763 -11.05377 -10.92841 -10.82320 -10.68169 -10.50942 -10.17760 -10.09004 -9.46490 -9.00331 -8.24608 -8.13166 -7.73550 -6.81519 -5.50293 1.10258 1.74353 2.12082 2.22685 2.64863 2.69307 2.75072 2.79985 2.89804 3.32318 3.37609 3.78313 3.88372 4.04152 4.18496 4.32446 4.47701 4.72030 4.88861 4.96650 4.99980 5.07770 5.13923 5.30615 5.44384 5.52554 5.54843 5.69830 5.80915 6.05326 6.14395 6.29636 6.36560 6.55748 6.61027 6.78954 6.95700 7.04012 7.25142 7.29592 7.61169 7.68110 7.91441 8.10021 8.25133 8.76967 8.95567 9.09985 9.14578 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011863 B = 0.003714 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.713475 B = 7536.356341 C = 8286.378137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.364 6.364 3 C 0.537 3.463 4 O -0.512 6.512 5 C -0.204 4.204 6 C 0.122 3.878 7 N -0.565 5.565 8 H 0.421 0.579 9 C 0.325 3.675 10 N -0.561 5.561 11 C 0.486 3.514 12 N -0.636 5.636 13 C 0.380 3.620 14 C -0.372 4.372 15 H 0.114 0.886 16 C 0.070 3.930 17 N -0.710 5.710 18 Si 0.920 3.080 19 H -0.253 1.253 20 H -0.268 1.268 21 H -0.247 1.247 22 C -0.308 4.308 23 C 0.325 3.675 24 N -0.530 5.530 25 C 0.309 3.691 26 N -0.532 5.532 27 C -0.218 4.218 28 C -0.002 4.002 29 C -0.169 4.169 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.187 0.813 34 H 0.407 0.593 35 H 0.303 0.697 36 H 0.149 0.851 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.130 -15.881 4.970 18.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.281 6.281 3 C 0.383 3.617 4 O -0.401 6.401 5 C -0.214 4.214 6 C -0.010 4.010 7 N -0.171 5.171 8 H 0.259 0.741 9 C 0.092 3.908 10 N -0.285 5.285 11 C 0.243 3.757 12 N -0.260 5.260 13 C 0.276 3.724 14 C -0.399 4.399 15 H 0.132 0.868 16 C -0.162 4.162 17 N -0.328 5.328 18 Si 0.741 3.259 19 H -0.177 1.177 20 H -0.192 1.192 21 H -0.170 1.170 22 C -0.327 4.327 23 C 0.017 3.983 24 N -0.213 5.213 25 C 0.001 3.999 26 N -0.214 5.214 27 C -0.242 4.242 28 C -0.028 4.028 29 C -0.177 4.177 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.204 0.796 34 H 0.244 0.756 35 H 0.115 0.885 36 H 0.167 0.833 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.871 -14.902 3.835 17.284 hybrid contribution -0.670 -0.452 1.093 1.359 sum -8.541 -15.354 4.929 18.248 Atomic orbital electron populations 1.23193 0.76496 1.03251 1.02562 1.86543 1.23166 1.33236 1.85196 1.20132 0.87815 0.81123 0.72584 1.90836 1.66552 1.35895 1.46779 1.18811 0.88341 0.93154 1.21058 1.22039 0.81902 0.98847 0.98252 1.41299 1.08038 1.04543 1.63174 0.74098 1.17669 0.89259 0.84006 0.99820 1.65655 1.34879 1.00353 1.27586 1.17407 0.86578 0.84780 0.86945 1.41157 1.07042 1.02871 1.74941 1.16666 0.86929 0.79580 0.89188 1.20388 1.25165 1.02693 0.91651 0.86827 1.26498 0.94021 0.94002 1.01706 1.69517 1.24512 1.08061 1.30698 0.85994 0.80298 0.81631 0.78020 1.17710 1.19193 1.17015 1.12888 1.33904 0.86510 0.99387 1.24631 0.90835 0.91148 0.91715 1.81052 1.17065 1.12270 1.10868 1.25226 0.90830 0.92396 0.91399 1.81150 1.18042 1.09395 1.12829 1.21406 0.91210 1.02119 1.09455 1.20489 0.99653 0.90095 0.92565 1.18987 0.91888 0.92904 1.13887 0.92020 0.91985 0.88379 0.79633 0.75574 0.88518 0.83345 0.84522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.39 16 2 O -0.36 -4.06 10.40 -40.88 -0.43 -4.49 16 3 C 0.54 7.64 7.94 34.18 0.27 7.91 16 4 O -0.51 -8.65 16.03 -19.34 -0.31 -8.96 16 5 C -0.20 -2.87 6.27 -103.37 -0.65 -3.52 16 6 C 0.12 1.27 11.63 -16.54 -0.19 1.07 16 7 N -0.57 -6.52 5.97 -11.96 -0.07 -6.59 16 8 H 0.42 3.55 8.96 -40.82 -0.37 3.18 16 9 C 0.32 5.30 8.41 -155.49 -1.31 3.99 16 10 N -0.56 -10.29 10.43 -11.44 -0.12 -10.41 16 11 C 0.49 9.26 6.02 -154.96 -0.93 8.33 16 12 N -0.64 -12.28 3.28 -9.71 -0.03 -12.32 16 13 C 0.38 7.60 4.89 -83.54 -0.41 7.20 16 14 C -0.37 -7.23 7.05 -38.32 -0.27 -7.50 16 15 H 0.11 2.23 6.95 -52.48 -0.37 1.87 16 16 C 0.07 1.28 4.82 -17.20 -0.08 1.20 16 17 N -0.71 -13.28 10.80 55.60 0.60 -12.68 16 18 Si 0.92 14.57 29.58 -169.99 -5.03 9.55 16 19 H -0.25 -4.08 7.11 56.52 0.40 -3.68 16 20 H -0.27 -4.19 7.11 56.52 0.40 -3.79 16 21 H -0.25 -3.99 7.11 56.52 0.40 -3.59 16 22 C -0.31 -6.55 5.88 -104.95 -0.62 -7.17 16 23 C 0.32 7.21 13.88 -22.49 -0.31 6.90 16 24 N -0.53 -12.28 18.53 41.82 0.78 -11.51 16 25 C 0.31 6.90 14.83 -22.41 -0.33 6.57 16 26 N -0.53 -12.47 18.55 41.91 0.78 -11.70 16 27 C -0.22 -4.01 8.55 -39.57 -0.34 -4.35 16 28 C 0.00 -0.04 9.91 -39.53 -0.39 -0.43 16 29 C -0.17 -2.84 6.28 -104.88 -0.66 -3.50 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.19 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.41 7.86 8.94 -40.82 -0.36 7.50 16 35 H 0.30 5.29 8.29 -40.82 -0.34 4.95 16 36 H 0.15 2.72 6.20 -52.49 -0.33 2.39 16 37 H 0.14 2.27 7.53 -52.49 -0.40 1.88 16 LS Contribution 351.17 15.07 5.29 5.29 Total: -1.00 -27.79 351.17 -6.34 -34.12 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -2.64 Total: 11.61 kcal Atomic # 6 Polarization: 23.23 SS G_CDS: -5.15 Total: 18.08 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: 1.93 Total: -65.20 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.74 Total: -13.45 kcal Atomic # 14 Polarization: 14.57 SS G_CDS: -5.03 Total: 9.55 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.79 -6.34 -34.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211502.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.654 kcal (2) G-P(sol) polarization free energy of solvation -27.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds