Wall clock time and date at job start Tue Mar 31 2020 20:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34841 * 116.99975 * 2 1 4 4 O 1.21598 * 120.00067 * 0.02562 * 3 2 1 5 5 C 1.46765 * 120.00049 * 180.02562 * 3 2 1 6 6 C 1.36419 * 126.83513 * 359.97383 * 5 3 2 7 7 N 1.35601 * 109.70608 * 180.02562 * 6 5 3 8 8 H 0.97001 * 124.71503 * 179.97438 * 7 6 5 9 9 C 1.37669 * 110.56400 * 0.02562 * 7 6 5 10 10 N 1.32808 * 132.89265 * 180.29759 * 9 7 6 11 11 C 1.32156 * 121.45847 * 180.22479 * 10 9 7 12 12 N 1.39162 * 119.32165 * 179.71150 * 11 10 9 13 13 C 1.38369 * 120.00089 * 185.87164 * 12 11 10 14 14 C 1.38979 * 119.99787 * 62.34929 * 13 12 11 15 15 H 1.08007 * 119.99653 * 198.17253 * 14 13 12 16 16 C 1.40843 * 120.00203 * 18.17343 * 14 13 12 17 17 N 1.30333 * 119.99998 * 8.82796 * 16 14 13 18 18 Si 1.86794 * 120.00324 * 188.83194 * 16 14 13 19 19 H 1.48498 * 109.47390 * 89.99896 * 18 16 14 20 20 H 1.48502 * 109.47382 * 210.00086 * 18 16 14 21 21 H 1.48501 * 109.47098 * 329.99774 * 18 16 14 22 22 C 1.41146 * 120.00255 * 242.35373 * 13 12 11 23 23 C 1.43195 * 120.00062 * 174.69659 * 22 13 12 24 24 N 9.50113 * 174.11765 * 51.67670 * 4 1 2 25 25 C 1.43198 * 119.99935 * 354.41164 * 22 13 12 26 26 N 9.14582 * 159.69342 * 111.73124 * 3 1 2 27 27 C 1.39425 * 121.35745 * 359.43646 * 11 10 9 28 28 C 1.37061 * 119.40666 * 0.27964 * 27 11 10 29 29 C 1.39514 * 118.27382 * 359.97438 * 28 27 11 30 30 H 1.09002 * 109.46931 * 299.99480 * 1 2 3 31 31 H 1.09000 * 109.47192 * 59.99663 * 1 2 3 32 32 H 1.09001 * 109.46664 * 180.02562 * 1 2 3 33 33 H 1.07999 * 125.15020 * 0.04366 * 6 5 3 34 34 H 0.96998 * 120.00097 * 5.88135 * 12 11 10 35 35 H 0.96999 * 120.00445 * 184.99158 * 17 16 14 36 36 H 1.07995 * 120.29321 * 180.25110 * 27 11 10 37 37 H 1.07996 * 120.86589 * 179.97438 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4019 2.2213 0.0005 5 6 3.5298 1.2783 -0.0006 6 6 4.4037 0.2307 -0.0006 7 7 5.6769 0.6974 -0.0007 8 1 6.4700 0.1389 -0.0003 9 6 5.6873 2.0741 0.0000 10 7 6.6671 2.9706 -0.0049 11 6 6.4150 4.2679 0.0016 12 7 7.4760 5.1683 0.0022 13 6 7.2326 6.5243 0.1314 14 6 6.6357 7.0161 1.2861 15 1 6.1805 7.9956 1.2835 16 6 6.6244 6.2374 2.4596 17 7 7.3180 5.1355 2.5172 18 14 5.6153 6.7838 3.9335 19 1 4.2485 6.2111 3.8375 20 1 6.2645 6.3085 5.1817 21 1 5.5305 8.2662 3.9533 22 6 7.5904 7.4079 -0.9094 23 6 7.2369 8.7931 -0.8259 24 7 6.9568 9.8916 -0.7618 25 6 8.3122 6.9205 -2.0461 26 7 8.8861 6.5319 -2.9484 27 6 5.1078 4.7529 0.0020 28 6 4.0615 3.8676 0.0014 29 6 4.3506 2.5028 -0.0001 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 4.1239 -0.8124 -0.0009 34 1 8.3862 4.8454 -0.0881 35 1 7.2539 4.5622 3.2970 36 1 4.9215 5.8167 0.0032 37 1 3.0397 4.2174 0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158211502.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:00 Heat of formation + Delta-G solvation = 39.984348 kcal Electronic energy + Delta-G solvation = -27460.753314 eV Core-core repulsion = 23396.657435 eV Total energy + Delta-G solvation = -4064.095879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.096 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.59136 -40.94726 -40.06754 -38.07656 -37.25110 -36.79456 -36.50575 -34.94291 -33.89248 -32.11152 -31.42149 -29.29397 -28.81257 -28.15215 -24.50851 -24.46606 -23.96618 -22.50656 -20.96602 -20.68800 -19.49834 -18.82824 -18.40651 -18.17460 -17.70522 -17.29926 -17.22837 -16.85370 -16.46109 -15.99458 -15.55653 -15.16566 -14.75578 -14.55420 -14.39852 -14.33196 -14.18503 -13.96282 -13.86173 -13.72346 -13.47679 -13.37259 -13.22112 -13.15250 -13.00301 -12.75021 -12.68881 -12.62785 -12.05771 -11.67868 -11.60827 -11.56193 -11.40838 -10.83579 -10.36585 -9.77300 -9.34226 -9.14161 -8.20175 -7.14615 0.00068 0.32874 0.80581 0.91870 1.36315 1.48400 1.52438 1.65123 1.86352 2.04148 2.08203 2.24151 2.25710 2.36447 2.59792 2.75025 3.10508 3.42206 3.70572 3.77099 3.83603 3.94738 4.17391 4.40426 4.42301 4.43666 4.48949 4.61534 4.65924 4.67784 4.77641 4.84264 5.22277 5.28774 5.38935 5.48063 5.51894 5.60346 5.89446 6.01943 6.13557 6.30767 6.65701 6.80613 6.92385 7.17679 7.33195 7.41029 7.68366 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011863 B = 0.003714 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.713475 B = 7536.356341 C = 8286.378137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.355 6.355 3 C 0.540 3.460 4 O -0.552 6.552 5 C -0.246 4.246 6 C 0.179 3.821 7 N -0.549 5.549 8 H 0.440 0.560 9 C 0.307 3.693 10 N -0.567 5.567 11 C 0.468 3.532 12 N -0.638 5.638 13 C 0.378 3.622 14 C -0.364 4.364 15 H 0.110 0.890 16 C 0.048 3.952 17 N -0.713 5.713 18 Si 0.971 3.029 19 H -0.256 1.256 20 H -0.258 1.258 21 H -0.251 1.251 22 C -0.322 4.322 23 C 0.331 3.669 24 N -0.553 5.553 25 C 0.316 3.684 26 N -0.559 5.559 27 C -0.231 4.231 28 C -0.009 4.009 29 C -0.182 4.182 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.137 0.863 33 H 0.245 0.755 34 H 0.404 0.596 35 H 0.310 0.690 36 H 0.141 0.859 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.017 -19.203 6.322 22.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.271 6.271 3 C 0.388 3.612 4 O -0.444 6.444 5 C -0.255 4.255 6 C 0.045 3.955 7 N -0.156 5.156 8 H 0.281 0.719 9 C 0.074 3.926 10 N -0.291 5.291 11 C 0.226 3.774 12 N -0.263 5.263 13 C 0.274 3.726 14 C -0.391 4.391 15 H 0.128 0.872 16 C -0.184 4.184 17 N -0.331 5.331 18 Si 0.790 3.210 19 H -0.181 1.181 20 H -0.182 1.182 21 H -0.174 1.174 22 C -0.341 4.341 23 C 0.024 3.976 24 N -0.237 5.237 25 C 0.011 3.989 26 N -0.242 5.242 27 C -0.255 4.255 28 C -0.035 4.035 29 C -0.190 4.190 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.155 0.845 33 H 0.261 0.739 34 H 0.241 0.759 35 H 0.123 0.877 36 H 0.158 0.842 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.732 -18.283 5.178 20.912 hybrid contribution -0.508 0.302 0.758 0.961 sum -9.240 -17.981 5.936 21.070 Atomic orbital electron populations 1.23518 0.74748 1.05693 1.02218 1.86516 1.24765 1.31283 1.84543 1.20166 0.87880 0.81419 0.71716 1.90819 1.67350 1.37321 1.48922 1.18870 0.88975 0.93036 1.24634 1.22910 0.80182 1.00299 0.92074 1.41388 1.09513 1.02799 1.61911 0.71857 1.17924 0.88748 0.85744 1.00193 1.65641 1.35765 1.00398 1.27318 1.17438 0.86464 0.85167 0.88323 1.41033 1.06969 1.02548 1.75791 1.16625 0.87092 0.79937 0.88968 1.20555 1.23969 1.02565 0.91997 0.87166 1.26992 0.94645 0.93877 1.02852 1.69519 1.24162 1.08092 1.31308 0.85247 0.78934 0.80912 0.75925 1.18059 1.18181 1.17406 1.12921 1.35022 0.86364 0.99786 1.24754 0.90399 0.91224 0.91216 1.81036 1.18248 1.12766 1.11625 1.25367 0.90471 0.91867 0.91243 1.81129 1.19344 1.10143 1.13606 1.21335 0.91476 1.01896 1.10834 1.20555 0.99347 0.90913 0.92679 1.19329 0.93148 0.93466 1.13035 0.92414 0.92436 0.84472 0.73915 0.75948 0.87716 0.84171 0.84611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.57 113.37 1.20 1.63 16 2 O -0.35 -6.83 10.40 -57.54 -0.60 -7.43 16 3 C 0.54 14.47 7.94 70.05 0.56 15.03 16 4 O -0.55 -18.63 16.03 19.52 0.31 -18.31 16 5 C -0.25 -6.36 6.27 -19.06 -0.12 -6.48 16 6 C 0.18 2.87 11.63 83.69 0.97 3.84 16 7 N -0.55 -10.67 5.97 -191.76 -1.15 -11.81 16 8 H 0.44 5.54 8.96 -92.71 -0.83 4.71 16 9 C 0.31 9.55 8.41 133.70 1.12 10.67 16 10 N -0.57 -20.59 10.43 -190.12 -1.98 -22.57 16 11 C 0.47 18.08 6.02 133.15 0.80 18.88 16 12 N -0.64 -25.18 3.28 -184.63 -0.61 -25.79 16 13 C 0.38 15.46 4.89 39.00 0.19 15.65 16 14 C -0.36 -14.30 7.05 23.09 0.16 -14.13 16 15 H 0.11 4.38 6.95 -2.91 -0.02 4.36 16 16 C 0.05 1.73 4.82 85.55 0.41 2.15 16 17 N -0.71 -26.20 10.80 21.98 0.24 -25.96 16 18 Si 0.97 29.01 29.58 68.60 2.03 31.04 16 19 H -0.26 -7.81 7.11 99.48 0.71 -7.10 16 20 H -0.26 -7.32 7.11 99.48 0.71 -6.61 16 21 H -0.25 -7.65 7.11 99.48 0.71 -6.94 16 22 C -0.32 -14.04 5.88 -20.07 -0.12 -14.15 16 23 C 0.33 15.02 13.88 88.34 1.23 16.24 16 24 N -0.55 -26.07 18.53 19.00 0.35 -25.72 16 25 C 0.32 14.51 14.83 88.31 1.31 15.82 16 26 N -0.56 -26.78 18.55 19.03 0.35 -26.43 16 27 C -0.23 -8.76 8.55 22.28 0.19 -8.57 16 28 C -0.01 -0.32 9.91 22.30 0.22 -0.10 16 29 C -0.18 -5.98 6.28 -20.03 -0.13 -6.11 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.24 1.08 8.06 -2.91 -0.02 1.05 16 34 H 0.40 15.98 8.94 -92.71 -0.83 15.15 16 35 H 0.31 10.46 8.29 -92.71 -0.77 9.70 16 36 H 0.14 5.38 6.20 -2.91 -0.02 5.36 16 37 H 0.14 4.73 7.53 -2.91 -0.02 4.70 16 Total: -1.00 -62.26 351.17 6.51 -55.75 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: -0.45 Total: 26.87 kcal Atomic # 6 Polarization: 42.37 SS G_CDS: 8.00 Total: 50.37 kcal Atomic # 7 Polarization: -135.49 SS G_CDS: -2.79 Total: -138.28 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.29 Total: -25.75 kcal Atomic # 14 Polarization: 29.01 SS G_CDS: 2.03 Total: 31.04 kcal Total: -62.26 6.51 -55.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211502.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.735 kcal (2) G-P(sol) polarization free energy of solvation -62.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds