Wall clock time and date at job start Tue Mar 31 2020 20:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34871 * 116.99689 * 2 1 4 4 O 1.21590 * 120.00346 * 359.97438 * 3 2 1 5 5 C 1.46742 * 119.99730 * 180.02562 * 3 2 1 6 6 C 1.36037 * 125.43949 * 180.33120 * 5 3 2 7 7 C 1.41342 * 107.73439 * 180.10741 * 6 5 3 8 8 C 1.39850 * 134.12384 * 179.89819 * 7 6 5 9 9 N 1.31499 * 120.30121 * 179.68495 * 8 7 6 10 10 C 1.32930 * 122.23879 * 359.97438 * 9 8 7 11 11 N 1.39082 * 119.35500 * 179.97438 * 10 9 8 12 12 C 1.38370 * 120.00297 * 176.69448 * 11 10 9 13 13 C 1.38970 * 120.00199 * 298.10771 * 12 11 10 14 14 H 1.07998 * 120.00532 * 154.68822 * 13 12 11 15 15 C 1.40851 * 119.99518 * 334.68571 * 13 12 11 16 16 N 1.30333 * 119.99466 * 164.49559 * 15 13 12 17 17 Si 1.86792 * 120.00299 * 344.49243 * 15 13 12 18 18 H 1.48501 * 109.47447 * 87.12561 * 17 15 13 19 19 H 1.48507 * 109.47378 * 207.11968 * 17 15 13 20 20 H 1.48504 * 109.47429 * 327.12123 * 17 15 13 21 21 C 1.41150 * 119.99735 * 118.10066 * 12 11 10 22 22 C 1.43196 * 119.99664 * 184.51816 * 21 12 11 23 23 N 9.73112 * 152.29763 * 192.00054 * 2 1 3 24 24 C 1.43194 * 120.00074 * 4.51641 * 21 12 11 25 25 N 9.65500 * 135.51463 * 25.91958 * 3 1 2 26 26 C 1.38552 * 121.28842 * 359.97438 * 10 9 8 27 27 C 1.39102 * 118.87619 * 0.04337 * 26 10 9 28 28 N 1.36994 * 134.19490 * 179.97438 * 27 26 10 29 29 H 0.96998 * 125.61983 * 359.93814 * 28 27 26 30 30 H 1.09001 * 109.47103 * 60.00108 * 1 2 3 31 31 H 1.09003 * 109.47164 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47364 * 300.00352 * 1 2 3 33 33 H 1.08001 * 126.13167 * 0.04513 * 6 5 3 34 34 H 1.07999 * 119.85278 * 359.70417 * 8 7 6 35 35 H 0.97008 * 120.00153 * 356.69798 * 11 10 9 36 36 H 0.97007 * 119.99564 * 179.97438 * 16 15 13 37 37 H 1.08002 * 120.56053 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4020 2.2215 -0.0005 5 6 3.5297 1.2786 -0.0006 6 6 4.2594 2.4266 0.0058 7 6 5.6265 2.0679 0.0002 8 6 6.8231 2.7918 0.0007 9 7 7.9784 2.1638 0.0005 10 6 8.0645 0.8372 0.0002 11 7 9.3183 0.2353 -0.0005 12 6 9.4244 -1.1426 0.0683 13 6 8.9396 -1.8222 1.1793 14 1 8.6400 -2.8561 1.0917 15 6 8.8391 -1.1625 2.4198 16 7 8.1187 -1.6785 3.3756 17 14 9.7380 0.4515 2.6949 18 1 8.8843 1.5777 2.2389 19 1 10.0373 0.6114 4.1407 20 1 11.0074 0.4489 1.9241 21 6 10.0249 -1.8579 -0.9900 22 6 10.0482 -3.2894 -0.9640 23 7 10.0677 -4.4249 -0.9406 24 6 10.6107 -1.1520 -2.0896 25 7 11.0786 -0.5914 -2.9573 26 6 6.9295 0.0425 0.0008 27 6 5.6806 0.6550 0.0006 28 7 4.3907 0.1936 0.0005 29 1 4.1243 -0.7391 -0.0003 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.8648 3.4320 0.0128 34 1 6.7982 3.8715 0.0016 35 1 10.1185 0.7815 -0.0493 36 1 8.0498 -1.2244 4.2300 37 1 7.0131 -1.0342 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158214270.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:09 Heat of formation + Delta-G solvation = 54.688336 kcal Electronic energy + Delta-G solvation = -27412.165757 eV Core-core repulsion = 23348.707491 eV Total energy + Delta-G solvation = -4063.458267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.096 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74794 -40.34580 -38.96764 -36.98692 -36.65643 -35.32019 -34.84778 -33.98892 -31.98643 -31.10383 -30.36302 -28.69838 -27.55030 -27.40976 -24.65749 -22.59843 -22.23422 -21.10379 -20.41317 -19.29534 -18.94509 -17.98847 -17.50624 -16.96425 -16.67024 -16.45332 -16.17348 -15.30303 -15.02100 -14.84536 -14.79876 -13.89712 -13.76964 -13.63250 -13.61155 -13.33277 -13.21827 -12.88070 -12.82165 -12.51769 -12.43460 -11.93586 -11.80196 -11.66842 -11.61555 -11.45096 -11.15737 -11.11521 -11.06645 -10.99104 -10.67153 -10.31307 -9.98957 -9.43880 -9.22887 -8.69152 -8.25326 -7.88101 -7.07369 -5.53876 0.59624 1.73246 1.76687 2.04306 2.33604 2.72353 2.79868 2.83920 2.91258 2.99112 3.36835 3.47056 3.77276 3.97096 4.05080 4.19694 4.22871 4.57797 4.67638 4.80729 4.89293 4.93690 5.04924 5.07291 5.19806 5.28318 5.35194 5.44517 5.73903 5.89526 6.00860 6.06792 6.08927 6.27183 6.30634 6.57550 6.73939 7.02343 7.09291 7.33808 7.36976 7.47826 7.53612 7.83962 7.88078 8.43803 8.83555 9.02859 9.04603 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011960 B = 0.003622 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.521786 B = 7727.934921 C = 7945.667728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.360 6.360 3 C 0.536 3.464 4 O -0.499 6.499 5 C -0.001 4.001 6 C -0.054 4.054 7 C -0.229 4.229 8 C 0.219 3.781 9 N -0.538 5.538 10 C 0.423 3.577 11 N -0.669 5.669 12 C 0.338 3.662 13 C -0.353 4.353 14 H 0.124 0.876 15 C 0.077 3.923 16 N -0.722 5.722 17 Si 0.917 3.083 18 H -0.239 1.239 19 H -0.285 1.285 20 H -0.250 1.250 21 C -0.295 4.295 22 C 0.322 3.678 23 N -0.524 5.524 24 C 0.307 3.693 25 N -0.526 5.526 26 C -0.235 4.235 27 C 0.196 3.804 28 N -0.568 5.568 29 H 0.426 0.574 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.409 0.591 36 H 0.306 0.694 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.267 8.411 3.175 16.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.277 6.277 3 C 0.381 3.619 4 O -0.387 6.387 5 C -0.106 4.106 6 C -0.082 4.082 7 C -0.237 4.237 8 C 0.048 3.952 9 N -0.253 5.253 10 C 0.198 3.802 11 N -0.299 5.299 12 C 0.236 3.764 13 C -0.380 4.380 14 H 0.142 0.858 15 C -0.156 4.156 16 N -0.339 5.339 17 Si 0.741 3.259 18 H -0.162 1.162 19 H -0.212 1.212 20 H -0.173 1.173 21 C -0.313 4.313 22 C 0.014 3.986 23 N -0.206 5.206 24 C -0.001 4.001 25 N -0.208 5.208 26 C -0.264 4.264 27 C 0.078 3.922 28 N -0.173 5.173 29 H 0.266 0.734 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.176 0.824 34 H 0.180 0.820 35 H 0.248 0.752 36 H 0.118 0.882 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.209 7.844 2.137 14.668 hybrid contribution -0.733 -0.036 0.693 1.009 sum -12.942 7.808 2.830 15.378 Atomic orbital electron populations 1.23299 0.75476 1.03942 1.02757 1.86587 1.24063 1.32537 1.84538 1.19932 0.87031 0.81810 0.73105 1.90899 1.65419 1.35804 1.46551 1.18834 0.86326 0.88059 1.17420 1.20766 0.90574 0.97207 0.99686 1.18945 0.94733 0.93388 1.16647 1.22057 0.84449 0.99210 0.89458 1.67067 1.28945 1.08632 1.20606 1.17493 0.84922 0.87411 0.90367 1.41860 1.05282 1.05779 1.76938 1.16750 0.89930 0.78679 0.91062 1.20119 1.26552 1.00838 0.90493 0.85847 1.26725 0.93125 1.00519 0.95216 1.69395 1.22469 1.37369 1.04665 0.86107 0.81806 0.79850 0.78124 1.16244 1.21232 1.17335 1.12764 1.34823 0.83199 1.00558 1.24602 0.90964 0.91219 0.91823 1.81078 1.16551 1.12187 1.10760 1.25058 0.91005 0.92572 0.91434 1.81004 1.17329 1.09615 1.12805 1.20335 0.87726 1.02201 1.16174 1.17985 0.85157 0.92676 0.96430 1.41736 1.03367 1.08456 1.63762 0.73447 0.91657 0.87856 0.91642 0.82357 0.81965 0.75248 0.88232 0.82980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.36 -3.84 10.57 -40.96 -0.43 -4.27 16 3 C 0.54 6.61 7.94 34.17 0.27 6.88 16 4 O -0.50 -6.93 16.63 -19.33 -0.32 -7.25 16 5 C 0.00 -0.01 7.00 -82.20 -0.58 -0.58 16 6 C -0.05 -0.66 10.53 -39.19 -0.41 -1.07 16 7 C -0.23 -3.17 6.20 -106.91 -0.66 -3.83 16 8 C 0.22 2.94 11.28 -17.09 -0.19 2.75 16 9 N -0.54 -8.71 9.69 -12.09 -0.12 -8.83 16 10 C 0.42 7.34 5.24 -154.71 -0.81 6.53 16 11 N -0.67 -11.99 2.24 -9.78 -0.02 -12.01 16 12 C 0.34 6.50 4.44 -83.54 -0.37 6.13 16 13 C -0.35 -7.01 7.17 -38.32 -0.27 -7.29 16 14 H 0.12 2.67 7.29 -52.49 -0.38 2.29 16 15 C 0.08 1.47 5.16 -17.20 -0.09 1.38 16 16 N -0.72 -14.20 13.90 55.60 0.77 -13.43 16 17 Si 0.92 15.84 24.39 -169.99 -4.15 11.70 16 18 H -0.24 -4.12 5.67 56.52 0.32 -3.80 16 19 H -0.29 -4.94 7.11 56.52 0.40 -4.54 16 20 H -0.25 -4.30 6.83 56.52 0.39 -3.91 16 21 C -0.30 -6.08 5.88 -104.95 -0.62 -6.70 16 22 C 0.32 7.09 13.95 -22.48 -0.31 6.78 16 23 N -0.52 -12.15 18.54 41.83 0.78 -11.37 16 24 C 0.31 6.59 14.81 -22.54 -0.33 6.26 16 25 N -0.53 -11.84 18.52 41.76 0.77 -11.07 16 26 C -0.24 -3.96 8.76 -39.14 -0.34 -4.30 16 27 C 0.20 2.95 7.31 -84.04 -0.61 2.34 16 28 N -0.57 -7.33 6.18 -7.33 -0.05 -7.38 16 29 H 0.43 4.72 8.96 -40.82 -0.37 4.36 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.41 7.06 7.96 -40.82 -0.32 6.73 16 36 H 0.31 5.43 8.29 -40.82 -0.34 5.09 16 37 H 0.15 2.68 6.03 -52.49 -0.32 2.36 16 LS Contribution 345.56 15.07 5.21 5.21 Total: -1.00 -26.56 345.56 -4.56 -31.12 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -2.73 Total: 10.97 kcal Atomic # 6 Polarization: 20.89 SS G_CDS: -4.27 Total: 16.62 kcal Atomic # 7 Polarization: -66.23 SS G_CDS: 2.14 Total: -64.09 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -0.75 Total: -11.52 kcal Atomic # 14 Polarization: 15.84 SS G_CDS: -4.15 Total: 11.70 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -26.56 -4.56 -31.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214270.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.809 kcal (2) G-P(sol) polarization free energy of solvation -26.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds