Wall clock time and date at job start Tue Mar 31 2020 20:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34871 * 116.99689 * 2 1 4 4 O 1.21590 * 120.00346 * 359.97438 * 3 2 1 5 5 C 1.46742 * 119.99730 * 180.02562 * 3 2 1 6 6 C 1.36037 * 125.43949 * 180.33120 * 5 3 2 7 7 C 1.41342 * 107.73439 * 180.10741 * 6 5 3 8 8 C 1.39850 * 134.12384 * 179.89819 * 7 6 5 9 9 N 1.31499 * 120.30121 * 179.68495 * 8 7 6 10 10 C 1.32930 * 122.23879 * 359.97438 * 9 8 7 11 11 N 1.39082 * 119.35500 * 179.97438 * 10 9 8 12 12 C 1.38370 * 120.00297 * 176.69448 * 11 10 9 13 13 C 1.38970 * 120.00199 * 298.10771 * 12 11 10 14 14 H 1.07998 * 120.00532 * 154.68822 * 13 12 11 15 15 C 1.40851 * 119.99518 * 334.68571 * 13 12 11 16 16 N 1.30333 * 119.99466 * 164.49559 * 15 13 12 17 17 Si 1.86792 * 120.00299 * 344.49243 * 15 13 12 18 18 H 1.48501 * 109.47447 * 87.12561 * 17 15 13 19 19 H 1.48507 * 109.47378 * 207.11968 * 17 15 13 20 20 H 1.48504 * 109.47429 * 327.12123 * 17 15 13 21 21 C 1.41150 * 119.99735 * 118.10066 * 12 11 10 22 22 C 1.43196 * 119.99664 * 184.51816 * 21 12 11 23 23 N 9.73112 * 152.29763 * 192.00054 * 2 1 3 24 24 C 1.43194 * 120.00074 * 4.51641 * 21 12 11 25 25 N 9.65500 * 135.51463 * 25.91958 * 3 1 2 26 26 C 1.38552 * 121.28842 * 359.97438 * 10 9 8 27 27 C 1.39102 * 118.87619 * 0.04337 * 26 10 9 28 28 N 1.36994 * 134.19490 * 179.97438 * 27 26 10 29 29 H 0.96998 * 125.61983 * 359.93814 * 28 27 26 30 30 H 1.09001 * 109.47103 * 60.00108 * 1 2 3 31 31 H 1.09003 * 109.47164 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47364 * 300.00352 * 1 2 3 33 33 H 1.08001 * 126.13167 * 0.04513 * 6 5 3 34 34 H 1.07999 * 119.85278 * 359.70417 * 8 7 6 35 35 H 0.97008 * 120.00153 * 356.69798 * 11 10 9 36 36 H 0.97007 * 119.99564 * 179.97438 * 16 15 13 37 37 H 1.08002 * 120.56053 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4020 2.2215 -0.0005 5 6 3.5297 1.2786 -0.0006 6 6 4.2594 2.4266 0.0058 7 6 5.6265 2.0679 0.0002 8 6 6.8231 2.7918 0.0007 9 7 7.9784 2.1638 0.0005 10 6 8.0645 0.8372 0.0002 11 7 9.3183 0.2353 -0.0005 12 6 9.4244 -1.1426 0.0683 13 6 8.9396 -1.8222 1.1793 14 1 8.6400 -2.8561 1.0917 15 6 8.8391 -1.1625 2.4198 16 7 8.1187 -1.6785 3.3756 17 14 9.7380 0.4515 2.6949 18 1 8.8843 1.5777 2.2389 19 1 10.0373 0.6114 4.1407 20 1 11.0074 0.4489 1.9241 21 6 10.0249 -1.8579 -0.9900 22 6 10.0482 -3.2894 -0.9640 23 7 10.0677 -4.4249 -0.9406 24 6 10.6107 -1.1520 -2.0896 25 7 11.0786 -0.5914 -2.9573 26 6 6.9295 0.0425 0.0008 27 6 5.6806 0.6550 0.0006 28 7 4.3907 0.1936 0.0005 29 1 4.1243 -0.7391 -0.0003 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.8648 3.4320 0.0128 34 1 6.7982 3.8715 0.0016 35 1 10.1185 0.7815 -0.0493 36 1 8.0498 -1.2244 4.2300 37 1 7.0131 -1.0342 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158214270.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:08 Heat of formation + Delta-G solvation = 39.710869 kcal Electronic energy + Delta-G solvation = -27412.815229 eV Core-core repulsion = 23348.707491 eV Total energy + Delta-G solvation = -4064.107738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.096 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.82026 -41.31776 -40.23323 -38.34672 -37.58003 -36.95388 -36.60556 -35.48997 -33.18372 -32.35435 -31.60777 -29.68170 -29.05768 -28.42840 -25.69426 -23.78553 -23.45301 -22.45500 -21.41644 -20.81452 -20.02653 -19.25773 -18.93761 -17.99135 -17.91265 -17.53823 -17.50719 -16.43874 -16.24068 -15.98378 -15.92442 -15.02465 -14.94283 -14.76779 -14.58663 -14.56270 -14.55743 -14.41305 -14.28339 -14.01323 -13.55862 -13.44923 -13.33035 -13.07620 -13.03657 -12.83248 -12.77120 -12.59691 -12.14639 -11.94934 -11.87926 -11.66013 -11.29312 -10.62678 -10.51496 -9.92062 -9.63841 -9.39505 -8.32698 -7.19531 -0.45315 0.31972 0.59626 0.86676 1.29838 1.42308 1.47130 1.48361 1.82430 1.98075 2.00207 2.02200 2.14422 2.21396 2.49549 2.57388 2.98742 3.34200 3.63760 3.68901 3.71057 3.84451 4.06045 4.12149 4.25665 4.30314 4.33737 4.41823 4.68110 4.70532 4.77162 4.85132 4.89575 5.15537 5.19678 5.38682 5.49524 5.52494 5.70240 5.84736 6.01980 6.32042 6.40565 6.48965 6.55246 7.10267 7.20548 7.29715 7.56151 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011960 B = 0.003622 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.521786 B = 7727.934921 C = 7945.667728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.541 3.459 4 O -0.516 6.516 5 C -0.007 4.007 6 C -0.046 4.046 7 C -0.230 4.230 8 C 0.227 3.773 9 N -0.553 5.553 10 C 0.409 3.591 11 N -0.672 5.672 12 C 0.354 3.646 13 C -0.350 4.350 14 H 0.101 0.899 15 C 0.062 3.938 16 N -0.739 5.739 17 Si 0.954 3.046 18 H -0.234 1.234 19 H -0.282 1.282 20 H -0.249 1.249 21 C -0.305 4.305 22 C 0.328 3.672 23 N -0.551 5.551 24 C 0.317 3.683 25 N -0.546 5.546 26 C -0.250 4.250 27 C 0.181 3.819 28 N -0.562 5.562 29 H 0.432 0.568 30 H 0.068 0.932 31 H 0.131 0.869 32 H 0.068 0.932 33 H 0.186 0.814 34 H 0.206 0.794 35 H 0.411 0.589 36 H 0.317 0.683 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.614 10.402 3.767 18.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.282 6.282 3 C 0.387 3.613 4 O -0.405 6.405 5 C -0.113 4.113 6 C -0.073 4.073 7 C -0.238 4.238 8 C 0.057 3.943 9 N -0.268 5.268 10 C 0.185 3.815 11 N -0.303 5.303 12 C 0.251 3.749 13 C -0.377 4.377 14 H 0.119 0.881 15 C -0.170 4.170 16 N -0.356 5.356 17 Si 0.776 3.224 18 H -0.158 1.158 19 H -0.209 1.209 20 H -0.173 1.173 21 C -0.323 4.323 22 C 0.021 3.979 23 N -0.234 5.234 24 C 0.010 3.990 25 N -0.228 5.228 26 C -0.279 4.279 27 C 0.061 3.939 28 N -0.167 5.167 29 H 0.272 0.728 30 H 0.087 0.913 31 H 0.149 0.851 32 H 0.087 0.913 33 H 0.203 0.797 34 H 0.223 0.777 35 H 0.251 0.749 36 H 0.129 0.871 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.595 9.818 2.729 16.990 hybrid contribution -0.552 -0.664 0.572 1.036 sum -14.148 9.154 3.301 17.171 Atomic orbital electron populations 1.23631 0.73512 1.05969 1.03109 1.86581 1.25995 1.31602 1.84004 1.19839 0.86815 0.82042 0.72651 1.90891 1.65704 1.36412 1.47517 1.19073 0.86761 0.88117 1.17361 1.21069 0.89591 0.98303 0.98381 1.19178 0.95719 0.92698 1.16175 1.22778 0.83430 1.00995 0.87088 1.67135 1.30198 1.07851 1.21635 1.17563 0.84438 0.88143 0.91379 1.41765 1.05916 1.04971 1.77605 1.16506 0.88862 0.79499 0.90066 1.20036 1.26421 0.99898 0.91351 0.88126 1.27143 0.93277 1.01985 0.94592 1.69378 1.22702 1.38242 1.05301 0.85554 0.81122 0.77679 0.78034 1.15814 1.20912 1.17267 1.12791 1.35914 0.82590 1.01031 1.24822 0.90401 0.91495 0.91202 1.81062 1.17826 1.12888 1.11644 1.25074 0.90572 0.92178 0.91193 1.80998 1.18262 1.10219 1.13355 1.20221 0.88688 1.01408 1.17568 1.18071 0.85248 0.93636 0.96915 1.41783 1.02859 1.09083 1.62984 0.72778 0.91302 0.85085 0.91330 0.79704 0.77741 0.74925 0.87092 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 113.37 1.20 1.58 16 2 O -0.37 -7.14 10.57 -57.84 -0.61 -7.75 16 3 C 0.54 12.34 7.94 70.04 0.56 12.90 16 4 O -0.52 -13.30 16.63 19.54 0.33 -12.98 16 5 C -0.01 -0.17 7.00 39.80 0.28 0.11 16 6 C -0.05 -0.99 10.53 22.52 0.24 -0.75 16 7 C -0.23 -5.79 6.20 -21.35 -0.13 -5.92 16 8 C 0.23 5.42 11.28 85.13 0.96 6.38 16 9 N -0.55 -16.82 9.69 -192.16 -1.86 -18.68 16 10 C 0.41 13.81 5.24 132.74 0.70 14.51 16 11 N -0.67 -23.74 2.24 -184.84 -0.41 -24.16 16 12 C 0.35 13.66 4.44 39.00 0.17 13.84 16 13 C -0.35 -14.07 7.17 23.09 0.17 -13.91 16 14 H 0.10 4.50 7.29 -2.91 -0.02 4.48 16 15 C 0.06 2.34 5.16 85.55 0.44 2.78 16 16 N -0.74 -28.72 13.90 21.98 0.31 -28.41 16 17 Si 0.95 31.35 24.39 68.60 1.67 33.02 16 18 H -0.23 -7.58 5.67 99.48 0.56 -7.02 16 19 H -0.28 -9.10 7.11 99.48 0.71 -8.39 16 20 H -0.25 -8.14 6.83 99.48 0.68 -7.46 16 21 C -0.30 -12.68 5.88 -20.07 -0.12 -12.80 16 22 C 0.33 14.69 13.95 88.33 1.23 15.92 16 23 N -0.55 -26.03 18.54 19.00 0.35 -25.68 16 24 C 0.32 13.61 14.81 88.35 1.31 14.92 16 25 N -0.55 -24.48 18.52 18.98 0.35 -24.13 16 26 C -0.25 -8.36 8.76 22.55 0.20 -8.16 16 27 C 0.18 5.25 7.31 39.32 0.29 5.54 16 28 N -0.56 -13.88 6.18 -177.11 -1.09 -14.97 16 29 H 0.43 9.32 8.96 -92.71 -0.83 8.49 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.19 2.93 8.06 -2.91 -0.02 2.91 16 34 H 0.21 2.98 8.06 -2.91 -0.02 2.96 16 35 H 0.41 13.89 7.96 -92.70 -0.74 13.15 16 36 H 0.32 10.94 8.29 -92.70 -0.77 10.17 16 37 H 0.14 4.89 6.03 -2.91 -0.02 4.87 16 Total: -1.00 -56.16 345.56 5.98 -50.18 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -0.53 Total: 26.64 kcal Atomic # 6 Polarization: 39.45 SS G_CDS: 7.48 Total: 46.93 kcal Atomic # 7 Polarization: -133.68 SS G_CDS: -2.36 Total: -136.04 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.29 Total: -20.73 kcal Atomic # 14 Polarization: 31.35 SS G_CDS: 1.67 Total: 33.02 kcal Total: -56.16 5.98 -50.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214270.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.892 kcal (2) G-P(sol) polarization free energy of solvation -56.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds